Rmu_sc0002484.1_g000006

oxidoreductase, 2OG-Fe(II) oxygenase family protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002484.1
OG0010863
Physical Location & Seq
Forward (+)
38362 .. 38718
357 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002484.1_g000006.1.cds

Sequence Viewer

Length: 357 bp
atggcgatggctgttgggccagctgcgttgccgccggccgatggaggcagtcctccagcgatgggacccacaatgatgccgatgacggtggtgccggacgctgtagctaaggatgcaataattgggtggtaccgcggcgagtttgcggcggccaacgctatgatcgacgcactctgcgcgcacctcacacagctcagcggcggaggggccgactacggcgccgtgttcgccgcaatacaccggaggcggatgaattggatcccggtgctccagatgcagaagtaccactccatcgctgacgtgatggtggagctccgaaacctcggggcgaagatacggtggtgccggacgcggtag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
2OG-FeII_Oxy

Protein Analysis

118

Amino Acids

12.64

Weight (kDa)

9.18

Isoelectric Point (pI)

44.64

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010863)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G02940
fragaria_vesca FvH4_2g24110 FvH4_2g24110 FvH4_2g24110
malus_domestica MD03G1271100.v1.1 MD11G1291700.v1.1
prunus_persica Prupe.8G247100_v2.0.a1
pyrus_communis pycom03g21580 pycom11g25840
rosa_chinensis RchiOBHm_Chr6g0291901
rosa_laevigata RLG00000012080
rosa_multiflora Rmu_sc0002484.1_g000006 Rmu_sc0002484.1_g000007
rosa_roxburghii Rroxscaffold_7G00175640
rosa_rugosa Rorug06G0221700
rosa_samantha Rh6AG335200 Rh6BG342600 Rh6CG348800 Rh6DG335400
rosa_wichuraiana Rw6G029170

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 129
AccB1I GGYRCC 4 cut(s) 91, 129, 218, 342
AccII CGCG 3 cut(s) 135, 179, 352
AclWI GGATC 2 cut(s) 253, 266
AcoI YGGCCR 2 cut(s) 36, 150
AcyI GRCGYC 1 cut(s) 219
AfaI GTAC 2 cut(s) 131, 284
AfiI CCNNNNNNNGG 2 cut(s) 41, 62
AjiI CACGTC 1 cut(s) 301
AluBI AGCT 4 cut(s) 23, 107, 193, 313
AluI AGCT 4 cut(s) 23, 107, 193, 313
Alw21I GWGCWC 2 cut(s) 270, 315
AlwI GGATC 2 cut(s) 253, 266
Ama87I CYCGRG 1 cut(s) 323
AoxI GGCC 4 cut(s) 17, 36, 150, 207
ApeKI GCWGC 1 cut(s) 23
Asp718I GGTACC 1 cut(s) 129
AspLEI GCGC 3 cut(s) 179, 181, 221
AspS9I GGNCC 3 cut(s) 17, 65, 207
AsuC2I CCSGG 1 cut(s) 263
AvaI CYCGRG 1 cut(s) 323
AvaII GGWCC 1 cut(s) 65
BaeI ACNNNNGTAYC 1 cut(s) 326
BamHI GGATCC 1 cut(s) 258
BanI GGYRCC 4 cut(s) 91, 129, 218, 342
BanII GRGCYC 1 cut(s) 315
Bbv12I GWGCWC 2 cut(s) 270, 315
BbvI GCAGC 1 cut(s) 10
BccI CCATC 4 cut(s) 35, 55, 298, 299
BceAI ACGGC 2 cut(s) 206, 232
BcnI CCSGG 1 cut(s) 263
BfmI CTRYAG 1 cut(s) 102
BfoI RGCGCY 1 cut(s) 222
BisI GCNGC 7 cut(s) 24, 32, 136, 147, 150, 199, 231
BlpI GCTNAGC 1 cut(s) 194
BlsI GCNGC 7 cut(s) 25, 33, 137, 148, 151, 200, 232
Bme1390I CCNGG 1 cut(s) 263
Bme18I GGWCC 1 cut(s) 65
BmeT110I CYCGRG 1 cut(s) 323
BmgBI CACGTC 1 cut(s) 301
BmgT120I GGNCC 3 cut(s) 17, 65, 207
BmiI GGNNCC 8 cut(s) 66, 67, 93, 131, 208, 220, 260, 344
BmrFI CCNGG 1 cut(s) 263
BmsI GCATC 3 cut(s) 66, 103, 264
BpmI CTGGAG 2 cut(s) 39, 254
Bpu10I CCTNAGC 1 cut(s) 108
Bpu1102I GCTNAGC 1 cut(s) 194
BpuMI CCSGG 1 cut(s) 263
BsaHI GRCGYC 1 cut(s) 219
BsaJI CCNNGG 2 cut(s) 133, 322
BsaWI WCCGGW 1 cut(s) 240
Bsc4I CCNNNNNNNGG 2 cut(s) 41, 62
Bse118I RCCGGY 1 cut(s) 34
BseDI CCNNGG 2 cut(s) 133, 322
BseGI GGATG 2 cut(s) 118, 255
BseLI CCNNNNNNNGG 2 cut(s) 41, 62
BseMII CTCAG 1 cut(s) 208
BsePI GCGCGC 1 cut(s) 177
BseX3I CGGCCG 1 cut(s) 36
BseXI GCAGC 1 cut(s) 10
Bsh1236I CGCG 3 cut(s) 135, 179, 352
Bsh1285I CGRYCG 1 cut(s) 39
BshFI GGCC 4 cut(s) 19, 38, 152, 209
BshNI GGYRCC 4 cut(s) 91, 129, 218, 342
BsiEI CGRYCG 1 cut(s) 39
BsiHKAI GWGCWC 2 cut(s) 270, 315
BsiHKCI CYCGRG 1 cut(s) 323
BsiSI CCGG 5 cut(s) 35, 95, 241, 263, 346
BslFI GGGAC 1 cut(s) 78
BslI CCNNNNNNNGG 2 cut(s) 41, 62
BsmFI GGGAC 1 cut(s) 78
BsnI GGCC 4 cut(s) 19, 38, 152, 209
BsoBI CYCGRG 1 cut(s) 323
Bsp1286I GDGCHC 2 cut(s) 270, 315
Bsp143I GATC 2 cut(s) 162, 258
Bsp1720I GCTNAGC 1 cut(s) 194
BspANI GGCC 4 cut(s) 19, 38, 152, 209
BspCNI CTCAG 1 cut(s) 207
BspFNI CGCG 3 cut(s) 135, 179, 352
BspLI GGNNCC 8 cut(s) 66, 67, 93, 131, 208, 220, 260, 344
BspPI GGATC 2 cut(s) 253, 266
BspT107I GGYRCC 4 cut(s) 91, 129, 218, 342
BsrFI RCCGGY 1 cut(s) 34
BssAI RCCGGY 1 cut(s) 34
BssECI CCNNGG 2 cut(s) 133, 322
BssHII GCGCGC 1 cut(s) 177
BssMI GATC 2 cut(s) 162, 258
BssNI GRCGYC 1 cut(s) 219
Bst4CI ACNGT 2 cut(s) 88, 339
BstACI GRCGYC 1 cut(s) 219
BstC8I GCNNGC 3 cut(s) 21, 36, 179
BstDEI CTNAG 2 cut(s) 108, 194
BstDSI CCRYGG 1 cut(s) 133
BstF5I GGATG 2 cut(s) 118, 255
BstFNI CGCG 3 cut(s) 135, 179, 352
BstH2I RGCGCY 1 cut(s) 222
BstHHI GCGC 3 cut(s) 179, 181, 221
BstKTI GATC 2 cut(s) 165, 261
BstMBI GATC 2 cut(s) 162, 258
BstMCI CGRYCG 1 cut(s) 39
BstMWI GCNNNNNNNGC 5 cut(s) 113, 155, 176, 227, 274
BstSCI CCNGG 1 cut(s) 261
BstSFI CTRYAG 1 cut(s) 102
BstUI CGCG 3 cut(s) 135, 179, 352
BstV1I GCAGC 1 cut(s) 10
BstX2I RGATCY 1 cut(s) 258
BstYI RGATCY 1 cut(s) 258
BstZI CGGCCG 1 cut(s) 36
BsuRI GGCC 4 cut(s) 19, 38, 152, 209
BtgI CCRYGG 1 cut(s) 133
BtgZI GCGATG 3 cut(s) 20, 74, 277
BtrI CACGTC 1 cut(s) 301
BtsCI GGATG 2 cut(s) 118, 255
Cac8I GCNNGC 3 cut(s) 21, 36, 179
CfoI GCGC 3 cut(s) 179, 181, 221
Cfr10I RCCGGY 1 cut(s) 34
Cfr13I GGNCC 3 cut(s) 17, 65, 207
Cfr42I CCGCGG 1 cut(s) 136
CseI GACGC 2 cut(s) 107, 176
Csp6I GTAC 2 cut(s) 130, 283
CviJI RGCY 9 cut(s) 11, 19, 23, 38, 107, 152, 193, 209, 313
CviKI_1 RGCY 9 cut(s) 11, 19, 23, 38, 107, 152, 193, 209, 313
CviQI GTAC 2 cut(s) 130, 283
DdeI CTNAG 2 cut(s) 108, 194
DinI GGCGCC 1 cut(s) 220
DpnI GATC 2 cut(s) 164, 260
DpnII GATC 2 cut(s) 162, 258
EaeI YGGCCR 2 cut(s) 36, 150
EagI CGGCCG 1 cut(s) 36
EciI GGCGGA 2 cut(s) 216, 262
Ecl136II GAGCTC 1 cut(s) 313
EclXI CGGCCG 1 cut(s) 36
Eco24I GRGCYC 1 cut(s) 315
Eco47I GGWCC 1 cut(s) 65
Eco52I CGGCCG 1 cut(s) 36
Eco53kI GAGCTC 1 cut(s) 313
Eco88I CYCGRG 1 cut(s) 323
EcoICRI GAGCTC 1 cut(s) 313
EcoO109I RGGNCCY 1 cut(s) 65
EcoT38I GRGCYC 1 cut(s) 315
EgeI GGCGCC 1 cut(s) 220
EheI GGCGCC 1 cut(s) 220
FaiI YATR 1 cut(s) 161
FaqI GGGAC 1 cut(s) 78
Fnu4HI GCNGC 7 cut(s) 24, 32, 136, 147, 150, 199, 231
FokI GGATG 2 cut(s) 125, 262
FriOI GRGCYC 1 cut(s) 315
Fsp4HI GCNGC 7 cut(s) 24, 32, 136, 147, 150, 199, 231
GlaI GCGC 3 cut(s) 178, 180, 220
GluI GCNGC 7 cut(s) 24, 32, 136, 147, 150, 199, 231
GsuI CTGGAG 2 cut(s) 39, 254
HaeII RGCGCY 1 cut(s) 222
HaeIII GGCC 4 cut(s) 19, 38, 152, 209
HapII CCGG 5 cut(s) 35, 95, 241, 263, 346
HgaI GACGC 2 cut(s) 107, 176
HhaI GCGC 3 cut(s) 179, 181, 221
Hin1I GRCGYC 1 cut(s) 219
Hin6I GCGC 3 cut(s) 177, 179, 219
HinP1I GCGC 3 cut(s) 177, 179, 219
HpaII CCGG 5 cut(s) 35, 95, 241, 263, 346
Hpy188I TCNGA 1 cut(s) 317
Hpy188III TCNNGA 1 cut(s) 271
Hpy99I CGWCG 1 cut(s) 170
HpyCH4III ACNGT 2 cut(s) 88, 339
HpyCH4IV ACGT 1 cut(s) 300
HpyCH4V TGCA 2 cut(s) 116, 277
HpyF10VI GCNNNNNNNGC 5 cut(s) 113, 155, 176, 227, 274
HpyF3I CTNAG 2 cut(s) 108, 194
HpySE526I ACGT 1 cut(s) 300
Hsp92I GRCGYC 1 cut(s) 219
HspAI GCGC 3 cut(s) 177, 179, 219
KasI GGCGCC 1 cut(s) 218
KflI GGGWCCC 1 cut(s) 65
KpnI GGTACC 1 cut(s) 133
KroI GCCGGC 1 cut(s) 34
KroNI GCCGGC 1 cut(s) 36
KspI CCGCGG 1 cut(s) 136
Kzo9I GATC 2 cut(s) 162, 258
LmnI GCTCC 3 cut(s) 273, 310, 318
LpnPI CCDG 7 cut(s) 33, 48, 69, 108, 254, 276, 284
Lsp1109I GCAGC 1 cut(s) 10
LweI GCATC 3 cut(s) 66, 103, 264
MaeII ACGT 1 cut(s) 300
MalI GATC 2 cut(s) 164, 260
MboI GATC 2 cut(s) 162, 258
MboII GAAGA 1 cut(s) 343
MflI RGATCY 1 cut(s) 258
MhlI GDGCHC 2 cut(s) 270, 315
MluCI AATT 2 cut(s) 120, 253
Mly113I GGCGCC 1 cut(s) 219
MnlI CCTC 6 cut(s) 38, 63, 194, 197, 237, 332
MroNI GCCGGC 1 cut(s) 34
MslI CAYNNNNRTG 1 cut(s) 74
MspA1I CMGCKG 3 cut(s) 23, 135, 198
MspI CCGG 5 cut(s) 35, 95, 241, 263, 346
MspR9I CCNGG 1 cut(s) 263
MvnI CGCG 3 cut(s) 135, 179, 352
MwoI GCNNNNNNNGC 5 cut(s) 113, 155, 176, 227, 274
NaeI GCCGGC 1 cut(s) 36
NarI GGCGCC 1 cut(s) 219
NciI CCSGG 1 cut(s) 263
NdeII GATC 2 cut(s) 162, 258
NgoMIV GCCGGC 1 cut(s) 34
NlaIV GGNNCC 8 cut(s) 66, 67, 93, 131, 208, 220, 260, 344
PauI GCGCGC 1 cut(s) 177
PcsI WCGNNNNNNNCGW 1 cut(s) 162
PdiI GCCGGC 1 cut(s) 36
PkrI GCNGC 7 cut(s) 25, 33, 137, 148, 151, 200, 232
PluTI GGCGCC 1 cut(s) 222
PpuMI RGGWCCY 1 cut(s) 65
Psp124BI GAGCTC 1 cut(s) 315
Psp5II RGGWCCY 1 cut(s) 65
PspN4I GGNNCC 8 cut(s) 66, 67, 93, 131, 208, 220, 260, 344
PspPI GGNCC 3 cut(s) 17, 65, 207
PspPPI RGGWCCY 1 cut(s) 65
PsuI RGATCY 1 cut(s) 258
PteI GCGCGC 1 cut(s) 177
PvuII CAGCTG 1 cut(s) 23
RsaI GTAC 2 cut(s) 131, 284
RsaNI GTAC 2 cut(s) 130, 283
RseI CAYNNNNRTG 1 cut(s) 74
SacI GAGCTC 1 cut(s) 315
SacII CCGCGG 1 cut(s) 136
SatI GCNGC 7 cut(s) 24, 32, 136, 147, 150, 199, 231
Sau3AI GATC 2 cut(s) 162, 258
Sau96I GGNCC 3 cut(s) 17, 65, 207
ScrFI CCNGG 1 cut(s) 263
SduI GDGCHC 2 cut(s) 270, 315
SetI ASST 7 cut(s) 25, 109, 186, 195, 303, 315, 324
SfaNI GCATC 3 cut(s) 66, 103, 264
SfcI CTRYAG 1 cut(s) 102
SfoI GGCGCC 1 cut(s) 220
Sfr303I CCGCGG 1 cut(s) 136
SgrBI CCGCGG 1 cut(s) 136
SinI GGWCC 1 cut(s) 65
SmiMI CAYNNNNRTG 1 cut(s) 74
Sse9I AATT 2 cut(s) 120, 253
SspDI GGCGCC 1 cut(s) 218
SstI GAGCTC 1 cut(s) 315
StyD4I CCNGG 1 cut(s) 261
TaaI ACNGT 2 cut(s) 88, 339
TaiI ACGT 1 cut(s) 303
TaqI TCGA 1 cut(s) 165
TasI AATT 2 cut(s) 120, 253
TauI GCSGC 6 cut(s) 34, 138, 149, 152, 201, 233
TseI GCWGC 1 cut(s) 23
TspDTI ATGAA 1 cut(s) 266
VpaK11BI GGWCC 1 cut(s) 65
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.