AT4G02990
ERF Family

mitochondrial transcription termination factor family protein

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
Physical Location & Seq
Forward (+)
1321758 .. 1324062
2305 bp
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UTR
Exon/CDS
Intron
AT4G02990.1

Sequence Viewer

Length: 1626 bp
ATGAAGATTAGGTTCTGTAATGGCTTCACAAAGCCTGGGTTTTTGCTAGTTCACTTTGAGCCACCATCTTTTTTTGCCGTTAGATCTCGTTCACTCTCTGATTCCACTTATGGCAACTTATGCAACCACAAGAAGAGACCTGGGACTGGAATTGGTCTAACTGTTCAATGCGCTATTGCAAATCGGAGATTTTCTTCACGTTCTTTGGATTCACCGAGAAGAGAAAGGTCTTCTCGTTCTTCTTCTTCTTCGGGAAGGGATAGGGATAGAGATAAGGATAAGGGAAGAGATTCTAAGTCTTTGTATAGTCGTCCTAGTTTGTTAGATATGAATAAGGAGAAAGCTGCTAATCGTGCTAAGGTTTATGAGTTCTTGCGTGGGATTGGGATTGTTCCTGATGAGCTTGATGGCCTTGAACTCCCTGTAACAGCTGATGTGATGAAAGAGCGTGTCGAGTTTCTTCACAAGTTAGGGCTTACCATTGAAGATATCAACAATTACCCTCTTGTTCTTGGTTGTAGCGTGAAGAAGAACATGGTTCCGGTTCTTGATTATCTCGGGAAACTAGGCGTCAGGAAATCGACTTTCACTGAGTTTCTTAGAAGATACCCGCAGGTTCTTCACTCTAGCGTTGTTATAGATCTTGCACCGGTGGTTAAGTATCTTCAAGGACTGGATATTAAACCGAGTGATGTACCTCGGGTGCTTGAGAGGTATCCAGAAGTTTTGGGGTTTAAGCTGGAAGGGACTATGAGCACATCAGTCGCTTATTTGGTTGGTATAGGTGTAGCTAGGAGGGAGATTGGGGGTATTTTAACACGGTACCCTGAGATTTTGGGAATGCGGGTAGCTCGGATAATTAAGCCTCTCGTGGAGTATCTCGAGGTTCTTGGTATTCCGAGACTGGCTGCAGCTAGGTTGATAGAGAAGCGGCCTCACATACTCGGGTTTGAATTGGATGATACGGTGAAACCAAACGTGCAAATCCTGCAAGATTTCAATGTCAGAGAAACATCTCTTCCTTCTATAATTGCGCAGTATCCTGAAATCATCGGAATCGACCTTAAACCTAAGCTCGACACACAGAGGAAGCTACTTTGTTCAGCCATTCATCTAAATCCAGAGGATCTTGGCTCTTTGATCGAGAGAATGCCGCAGTTTGTTAGTCTCAGCGAGTCTCCTATGTTAAAGCACATTGATTTCCTTACCAAGTGTGGATTTTCGATAGACCAAACAAGGGAAATGGTAATCGGGTGTCCTCAGGTTCTGGCTTTGAACCTCGGAATAATGAAACTCAGCTTTGAGTACTTCCAAAAGGAAATGAAAAGACCTCTTCAAGACCTTGTGGATTTCCCCGCATTCTTTACGTATGGGCTTGAGTCCACGGTAAAGCCGAGACACAAGAAGATAATCAAGAAGGGAATCAAATGTTCATTGGCTTGGATGCTAAACTGTTCAGATGAGAAGTTCGAACAGAGAATGAGCTACGACACAATAGATATAGAAGAGGTAGAAACTGATCCATCTTCTTTTGACATGAATACATTGATGCAACCTGAAAGAGAGGAGGAATCTGATTCCGAGTACGAGGAAGAAGAAGATGATGACGACGAGGAGTTTGCATAA

Protein Analysis

541

Amino Acids

61.55

Weight (kDa)

6.33

Isoelectric Point (pI)

51.49

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
mTERF PF02536 183 - 491 9.7e-112 mTERF
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 1035
Acc36I ACCTGC 1 cut(s) 604
Acc65I GGTACC 1 cut(s) 822
AccB1I GGYRCC 1 cut(s) 822
AciI CCGC 5 cut(s) 611, 844, 931, 1154, 1356
AclWI GGATC 2 cut(s) 1134, 1514
AcyI GRCGYC 1 cut(s) 570
AfaI GTAC 4 cut(s) 696, 824, 1307, 1586
AfiI CCNNNNNNNGG 2 cut(s) 146, 1237
AgeI ACCGGT 1 cut(s) 649
AgsI TTSAA 8 cut(s) 167, 416, 485, 668, 953, 1000, 1276, 1337
AjnI CCWGG 2 cut(s) 34, 139
Alw21I GWGCWC 1 cut(s) 758
Alw26I GTCTC 5 cut(s) 130, 895, 1172, 1182, 1390
AlwI GGATC 2 cut(s) 1134, 1514
AlwNI CAGNNNCTG 1 cut(s) 1267
Ama87I CYCGRG 4 cut(s) 557, 699, 881, 944
AoxI GGCC 2 cut(s) 409, 932
ApeKI GCWGC 3 cut(s) 344, 908, 911
ArsI GACNNNNNNTTYG 1 cut(s) 1601
AsiGI ACCGGT 1 cut(s) 649
Asp700I GAANNNNTTC 1 cut(s) 289
Asp718I GGTACC 1 cut(s) 822
AspLEI GCGC 2 cut(s) 173, 1036
AsuHPI GGTGA 2 cut(s) 204, 979
AsuII TTCGAA 1 cut(s) 1470
AvaI CYCGRG 4 cut(s) 557, 699, 881, 944
AxyI CCTNAGG 1 cut(s) 1260
BanI GGYRCC 1 cut(s) 822
BauI CACGAG 1 cut(s) 869
BbsI GAAGAC 1 cut(s) 222
Bbv12I GWGCWC 1 cut(s) 758
BbvI GCAGC 3 cut(s) 331, 895, 923
BccI CCATC 3 cut(s) 73, 401, 1531
BceAI ACGGC 1 cut(s) 62
BcgI CGANNNNNNTGC 3 cut(s) 745, 779, 1601
BciT130I CCWGG 2 cut(s) 36, 141
BciVI GTATCC 2 cut(s) 726, 1050
BcoDI GTCTC 5 cut(s) 130, 895, 1172, 1182, 1390
BfaI CTAG 6 cut(s) 47, 315, 566, 627, 792, 915
BfmI CTRYAG 1 cut(s) 909
BfuAI ACCTGC 1 cut(s) 604
BfuI GTATCC 2 cut(s) 726, 1050
BglII AGATCT 2 cut(s) 83, 640
BisI GCNGC 5 cut(s) 345, 909, 912, 932, 1154
BlsI GCNGC 5 cut(s) 346, 910, 913, 933, 1155
BmcAI AGTACT 1 cut(s) 1307
Bme1390I CCNGG 2 cut(s) 36, 141
BmeT110I CYCGRG 4 cut(s) 557, 699, 881, 944
BmiI GGNNCC 2 cut(s) 540, 824
BmrFI CCNGG 2 cut(s) 36, 141
BmsI GCATC 2 cut(s) 1434, 1539
BpiI GAAGAC 1 cut(s) 222
Bpu10I CCTNAGC 2 cut(s) 357, 1071
Bpu14I TTCGAA 1 cut(s) 1470
BpuEI CTTGAG 2 cut(s) 728, 1397
BsaAI YACGTR 1 cut(s) 1368
BsaHI GRCGYC 1 cut(s) 570
BsaI GGTCTC 1 cut(s) 130
BsaJI CCNNGG 5 cut(s) 35, 140, 698, 1279, 1383
BsaWI WCCGGW 2 cut(s) 541, 649
Bsc4I CCNNNNNNNGG 2 cut(s) 146, 1237
Bse118I RCCGGY 1 cut(s) 649
Bse1I ACTGG 3 cut(s) 151, 678, 909
Bse21I CCTNAGG 1 cut(s) 1260
BseBI CCWGG 2 cut(s) 36, 141
BseDI CCNNGG 5 cut(s) 35, 140, 698, 1279, 1383
BseGI GGATG 2 cut(s) 964, 1449
BseLI CCNNNNNNNGG 2 cut(s) 146, 1237
BseMII CTCAG 5 cut(s) 582, 819, 1183, 1274, 1309
BseNI ACTGG 3 cut(s) 151, 678, 909
BseRI GAGGAG 1 cut(s) 1580
BseXI GCAGC 3 cut(s) 331, 895, 923
BshFI GGCC 2 cut(s) 411, 934
BshNI GGYRCC 1 cut(s) 822
BshTI ACCGGT 1 cut(s) 649
BsiHKAI GWGCWC 1 cut(s) 758
BsiHKCI CYCGRG 4 cut(s) 557, 699, 881, 944
BsiSI CCGG 2 cut(s) 542, 650
BslFI GGGAC 2 cut(s) 157, 760
BslI CCNNNNNNNGG 2 cut(s) 146, 1237
BsmAI GTCTC 5 cut(s) 130, 895, 1172, 1182, 1390
BsmFI GGGAC 2 cut(s) 157, 760
BsmI GAATGC 3 cut(s) 846, 1155, 1358
BsnI GGCC 2 cut(s) 411, 934
Bso31I GGTCTC 1 cut(s) 130
BsoBI CYCGRG 4 cut(s) 557, 699, 881, 944
Bsp119I TTCGAA 1 cut(s) 1470
Bsp1286I GDGCHC 1 cut(s) 758
Bsp143I GATC 5 cut(s) 83, 640, 1126, 1140, 1519
BspACI CCGC 5 cut(s) 611, 844, 931, 1154, 1356
BspANI GGCC 2 cut(s) 411, 934
BspCNI CTCAG 5 cut(s) 583, 820, 1182, 1273, 1308
BspLI GGNNCC 2 cut(s) 540, 824
BspMAI CTGCAG 1 cut(s) 913
BspMI ACCTGC 1 cut(s) 604
BspPI GGATC 2 cut(s) 1134, 1514
BspT104I TTCGAA 1 cut(s) 1470
BspT107I GGYRCC 1 cut(s) 822
BspTNI GGTCTC 1 cut(s) 130
BsrFI RCCGGY 1 cut(s) 649
BsrI ACTGG 3 cut(s) 151, 678, 909
BssAI RCCGGY 1 cut(s) 649
BssECI CCNNGG 5 cut(s) 35, 140, 698, 1279, 1383
BssMI GATC 5 cut(s) 83, 640, 1126, 1140, 1519
BssNI GRCGYC 1 cut(s) 570
BssSI CACGAG 1 cut(s) 869
Bst2BI CACGAG 1 cut(s) 869
Bst2UI CCWGG 2 cut(s) 36, 141
Bst4CI ACNGT 5 cut(s) 163, 822, 967, 1387, 1454
Bst6I CTCTTC 6 cut(s) 128, 214, 280, 1023, 1338, 1500
BstACI GRCGYC 1 cut(s) 570
BstAPI GCANNNNNTGC 2 cut(s) 120, 988
BstBAI YACGTR 1 cut(s) 1368
BstBI TTCGAA 1 cut(s) 1470
BstDEI CTNAG 9 cut(s) 294, 357, 591, 599, 828, 1071, 1169, 1260, 1295
BstDSI CCRYGG 1 cut(s) 1383
BstF5I GGATG 2 cut(s) 964, 1449
BstHHI GCGC 2 cut(s) 173, 1036
BstKTI GATC 5 cut(s) 86, 643, 1129, 1143, 1522
BstMAI GTCTC 5 cut(s) 130, 895, 1172, 1182, 1390
BstMBI GATC 5 cut(s) 83, 640, 1126, 1140, 1519
BstMWI GCNNNNNNNGC 3 cut(s) 120, 353, 988
BstNI CCWGG 2 cut(s) 36, 141
BstSCI CCNGG 2 cut(s) 34, 139
BstSFI CTRYAG 1 cut(s) 909
BstSNI TACGTA 1 cut(s) 1368
BstV1I GCAGC 3 cut(s) 331, 895, 923
BstV2I GAAGAC 1 cut(s) 222
BstX2I RGATCY 3 cut(s) 83, 640, 1126
BstYI RGATCY 3 cut(s) 83, 640, 1126
Bsu36I CCTNAGG 1 cut(s) 1260
BsuI GTATCC 2 cut(s) 726, 1050
BsuRI GGCC 2 cut(s) 411, 934
BtgI CCRYGG 1 cut(s) 1383
BtsCI GGATG 2 cut(s) 964, 1449
BtsIMutI CAGTG 1 cut(s) 588
BveI ACCTGC 1 cut(s) 604
CaiI CAGNNNCTG 1 cut(s) 1267
CfoI GCGC 2 cut(s) 173, 1036
Cfr10I RCCGGY 1 cut(s) 649
CseI GACGC 1 cut(s) 559
Csp6I GTAC 4 cut(s) 695, 823, 1306, 1585
CspAI ACCGGT 1 cut(s) 649
CviAII CATG 2 cut(s) 535, 1537
CviQI GTAC 4 cut(s) 695, 823, 1306, 1585
DdeI CTNAG 9 cut(s) 294, 357, 591, 599, 828, 1071, 1169, 1260, 1295
DpnI GATC 5 cut(s) 85, 642, 1128, 1142, 1521
DpnII GATC 5 cut(s) 83, 640, 1126, 1140, 1519
Eam1104I CTCTTC 6 cut(s) 128, 214, 280, 1023, 1338, 1500
EarI CTCTTC 6 cut(s) 128, 214, 280, 1023, 1338, 1500
Eco105I TACGTA 1 cut(s) 1368
Eco31I GGTCTC 1 cut(s) 130
Eco32I GATATC 1 cut(s) 490
Eco81I CCTNAGG 1 cut(s) 1260
Eco88I CYCGRG 4 cut(s) 557, 699, 881, 944
EcoRII CCWGG 2 cut(s) 34, 139
EcoRV GATATC 1 cut(s) 490
FaeI CATG 2 cut(s) 538, 1540
FaqI GGGAC 2 cut(s) 157, 760
FatI CATG 2 cut(s) 534, 1536
FauI CCCGC 3 cut(s) 618, 837, 1363
Fnu4HI GCNGC 5 cut(s) 345, 909, 912, 932, 1154
FokI GGATG 2 cut(s) 971, 1456
Fsp4HI GCNGC 5 cut(s) 345, 909, 912, 932, 1154
FspBI CTAG 6 cut(s) 47, 315, 566, 627, 792, 915
FspI TGCGCA 1 cut(s) 1035
GlaI GCGC 2 cut(s) 172, 1035
GluI GCNGC 5 cut(s) 345, 909, 912, 932, 1154
HaeIII GGCC 2 cut(s) 411, 934
HapII CCGG 2 cut(s) 542, 650
HgaI GACGC 1 cut(s) 559
HhaI GCGC 2 cut(s) 173, 1036
Hin1I GRCGYC 1 cut(s) 570
Hin1II CATG 2 cut(s) 538, 1540
Hin6I GCGC 2 cut(s) 171, 1034
HinP1I GCGC 2 cut(s) 171, 1034
HinfI GANTC 9 cut(s) 101, 209, 290, 1056, 1175, 1379, 1422, 1571, 1577
HpaII CCGG 2 cut(s) 542, 650
HphI GGTGA 2 cut(s) 204, 979
Hpy166II GTNNAC 3 cut(s) 52, 92, 1383
Hpy8I GTNNAC 3 cut(s) 52, 92, 1383
Hpy99I CGWCG 1 cut(s) 1613
HpyAV CCTTC 4 cut(s) 249, 737, 1032, 1411
HpyCH4III ACNGT 5 cut(s) 163, 822, 967, 1387, 1454
HpyCH4IV ACGT 3 cut(s) 199, 978, 1367
HpyCH4V TGCA 8 cut(s) 123, 179, 647, 911, 982, 991, 1552, 1622
HpyF10VI GCNNNNNNNGC 3 cut(s) 120, 353, 988
HpyF3I CTNAG 9 cut(s) 294, 357, 591, 599, 828, 1071, 1169, 1260, 1295
HpySE526I ACGT 3 cut(s) 199, 978, 1367
Hsp92I GRCGYC 1 cut(s) 570
Hsp92II CATG 2 cut(s) 538, 1540
HspAI GCGC 2 cut(s) 171, 1034
KpnI GGTACC 1 cut(s) 826
Kzo9I GATC 5 cut(s) 83, 640, 1126, 1140, 1519
Lsp1109I GCAGC 3 cut(s) 331, 895, 923
LweI GCATC 2 cut(s) 1434, 1539
MaeI CTAG 6 cut(s) 47, 315, 566, 627, 792, 915
MaeII ACGT 3 cut(s) 199, 978, 1367
MaeIII GTNAC 1 cut(s) 424
MalI GATC 5 cut(s) 85, 642, 1128, 1142, 1521
MboI GATC 5 cut(s) 83, 640, 1126, 1140, 1519
MflI RGATCY 3 cut(s) 83, 640, 1126
MhlI GDGCHC 1 cut(s) 758
MluCI AATT 5 cut(s) 150, 496, 858, 953, 1029
MlyI GAGTC 2 cut(s) 1184, 1388
MroXI GAANNNNTTC 1 cut(s) 289
MseI TTAA 7 cut(s) 657, 681, 735, 815, 861, 1065, 1187
MspA1I CMGCKG 1 cut(s) 431
MspI CCGG 2 cut(s) 542, 650
MspR9I CCNGG 2 cut(s) 36, 141
Mva1269I GAATGC 3 cut(s) 846, 1155, 1358
MvaI CCWGG 2 cut(s) 36, 141
MwoI GCNNNNNNNGC 3 cut(s) 120, 353, 988
NdeII GATC 5 cut(s) 83, 640, 1126, 1140, 1519
NlaIII CATG 2 cut(s) 538, 1540
NlaIV GGNNCC 2 cut(s) 540, 824
NmeAIII GCCGAG 1 cut(s) 1419
NsbI TGCGCA 1 cut(s) 1035
NspV TTCGAA 1 cut(s) 1470
PaeR7I CTCGAG 1 cut(s) 881
PcsI WCGNNNNNNNCGW 1 cut(s) 1391
PctI GAATGC 3 cut(s) 846, 1155, 1358
PdmI GAANNNNTTC 1 cut(s) 289
PfeI GAWTC 7 cut(s) 101, 209, 290, 1056, 1422, 1571, 1577
PinAI ACCGGT 1 cut(s) 649
PkrI GCNGC 5 cut(s) 346, 910, 913, 933, 1155
PleI GAGTC 2 cut(s) 1183, 1387
PpsI GAGTC 2 cut(s) 1183, 1387
Ppu21I YACGTR 1 cut(s) 1368
Psp6I CCWGG 2 cut(s) 34, 139
PspGI CCWGG 2 cut(s) 34, 139
PspN4I GGNNCC 2 cut(s) 540, 824
PstI CTGCAG 1 cut(s) 913
PstNI CAGNNNCTG 1 cut(s) 1267
PsuI RGATCY 3 cut(s) 83, 640, 1126
PvuII CAGCTG 1 cut(s) 431
RsaI GTAC 4 cut(s) 696, 824, 1307, 1586
RsaNI GTAC 4 cut(s) 695, 823, 1306, 1585
SaqAI TTAA 7 cut(s) 657, 681, 735, 815, 861, 1065, 1187
SatI GCNGC 5 cut(s) 345, 909, 912, 932, 1154
Sau3AI GATC 5 cut(s) 83, 640, 1126, 1140, 1519
ScaI AGTACT 1 cut(s) 1307
SchI GAGTC 2 cut(s) 1184, 1388
ScrFI CCNGG 2 cut(s) 36, 141
SduI GDGCHC 1 cut(s) 758
SfaNI GCATC 2 cut(s) 1434, 1539
SfcI CTRYAG 1 cut(s) 909
Sfr274I CTCGAG 1 cut(s) 881
SfuI TTCGAA 1 cut(s) 1470
SgrAI CRCCGGYG 1 cut(s) 649
SlaI CTCGAG 1 cut(s) 881
SmlI CTYRAG 3 cut(s) 707, 881, 1376
SmoI CTYRAG 3 cut(s) 707, 881, 1376
SnaBI TACGTA 1 cut(s) 1368
Sse9I AATT 5 cut(s) 150, 496, 858, 953, 1029
SsiI CCGC 5 cut(s) 611, 844, 931, 1154, 1356
SspMI CTAG 6 cut(s) 47, 315, 566, 627, 792, 915
StyD4I CCNGG 2 cut(s) 34, 139
TaaI ACNGT 5 cut(s) 163, 822, 967, 1387, 1454
TaiI ACGT 3 cut(s) 202, 981, 1370
TaqI TCGA 8 cut(s) 453, 581, 882, 1059, 1077, 1143, 1223, 1470
TasI AATT 5 cut(s) 150, 496, 858, 953, 1029
TatI WGTACW 1 cut(s) 1305
TauI GCSGC 2 cut(s) 934, 1156
TfiI GAWTC 7 cut(s) 101, 209, 290, 1056, 1422, 1571, 1577
Tru1I TTAA 7 cut(s) 657, 681, 735, 815, 861, 1065, 1187
Tru9I TTAA 7 cut(s) 657, 681, 735, 815, 861, 1065, 1187
TscAI CASTG 1 cut(s) 595
TseI GCWGC 3 cut(s) 344, 908, 911
TspDTI ATGAA 8 cut(s) 17, 344, 455, 1100, 1304, 1337, 1422, 1553
TspRI CASTG 1 cut(s) 595
XhoI CTCGAG 1 cut(s) 881
XmnI GAANNNNTTC 1 cut(s) 289
XspI CTAG 6 cut(s) 47, 315, 566, 627, 792, 915
ZrmI AGTACT 1 cut(s) 1307
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.