Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8409065.1

Orthogroup ID

OG0010055

Physical Location & Seq

Genomic Coordinates Reverse (-)

6 .. 1286

Gene Structure 1281 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8409065.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1281 bp

atgaagaatgacaaggtggcaaatcgtgcccgggtttatgatttcttacgaggaattggtattattcctgatgagcttgatggtttggagcttcctgttacagttgaagttatgagggagcgtgtggattttctacacaacctggggcttacagttgaagacatcaacaactatccacttgttctaggctgcagtgtgaagaagaacatgattcctgtgcttgattatcttggcaaattgggtgttaggaaatccactttcactgagttcttgagaagatatccgcaagtcttacatgctagcgtggttgttgaccttgcacccgtggtccagtatcttcaaggaatggatatcaagcctgatgatattcctcgtgtacttgaaagatatccagaattgatgggattcaagcttgagggaaccatgagcacgtcggtggcctatttagttggcattggggttgcaagaagagagattggaggtgttttaactagatatcctgagattttgggaatgcgtgtaggtagggtgatcaagccttttgttgagtatcttgaaaacttgggtattccaagattaggggtggctagattgatagagaagcggccgcacattctcggttttggattggaggagagtgtgaaaccaaatattgaatcccttttggagtttcatgttcgaaaagaatcacttgcttctgttgttgcacaatatcctgagataataggaattgacctaaagcctaagcttttgagtcaacagagttcactcaagtcagtaattgatttgggtccggaggacttcggtagagttgttgagaagatgccacaggttgttagcctgagtgataaacccatgatgaagcatatcgatttccttaagaattgtgggttctctttggaacaaatgaggaagatggtcactgggtgcccccagttgcttgctttgaatcttgacatcatgaaacttagctttgatttctttcagaaagtgatgcaaaggcctttggatgacttggttgctttcccagcattcttcacttatggtctggaatccaccataaaaccaaggcataagatggtaacaaagagagggttgaaatgctctcttggatggcttctcaattgctctgatgagaagtttgagcaacggatggactacgacactattgaaatggacgagatggaatcatcgccatcattcgacatgaatactctcacagaaccaaggagtgatgagtcaggttcagactatgatagtgatgatgatgagtatgcatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003676 GO:0003723 GO:0003727 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006351 GO:0006396 GO:0006725 GO:0006807 GO:0006996 GO:0007275 GO:0008150 GO:0008152 GO:0008380 GO:0009058 GO:0009059 GO:0009303 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009657 GO:0009658 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0010467 GO:0016043 GO:0016070 GO:0016072 GO:0018130 GO:0019438 GO:0019843 GO:0022414 GO:0022607 GO:0022613 GO:0022618 GO:0032501 GO:0032502 GO:0032774 GO:0034622 GO:0034641 GO:0034645 GO:0034654 GO:0034660 GO:0042254 GO:0042255 GO:0042793 GO:0042794 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0061458 GO:0065003 GO:0070925 GO:0071704 GO:0071826 GO:0071840 GO:0090304 GO:0097159 GO:0097659 GO:0098781 GO:1901360 GO:1901362 GO:1901363 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

mTERF

Protein Analysis

426

Amino Acids

48.37

Weight (kDa)

5.34

Isoelectric Point (pI)

42.35

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010055)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G02990 AT4G02990
fragaria_vesca	FvH4_2g24160 FvH4_2g24160
malus_domestica	MD03G1271600.v1.1 MD11G1292200.v1.1
prunus_persica	Prupe.8G247800_v2.0.a1
pyrus_communis	pycom03g21610 pycom11g25870
rosa_chinensis	RchiOBHm_Chr6g0291971
rosa_laevigata	RLG00000012074
rosa_multiflora	Rmu_co8409065.1_g000001 Rmu_sc0026994.1_g000002
rosa_roxburghii	Rroxscaffold_7G00175540 Rroxscaffold_7G00178000
rosa_rugosa	Rorug06G0222200
rosa_samantha	Rh6AG335900 Rh6BG343300 Rh6CG349500 Rh6DG336300
rosa_wichuraiana	Rw6G029240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	927
AccIII	TCCGGA	1 cut(s)	793
AciI	CCGC	3 cut(s)	284, 604, 608
AcoI	YGGCCR	1 cut(s)	605
AdeI	CACNNNGTG	1 cut(s)	927
AfaI	GTAC	1 cut(s)	378
AfiI	CCNNNNNNNGG	1 cut(s)	578
AflII	CTTAAG	1 cut(s)	878
AjiI	CACGTC	1 cut(s)	432
AjnI	CCWGG	1 cut(s)	141
AleI	CACNNNNGTG	1 cut(s)	434
AluBI	AGCT	5 cut(s)	76, 91, 412, 748, 972
AluI	AGCT	5 cut(s)	76, 91, 412, 748, 972
Alw21I	GWGCWC	1 cut(s)	431
Ama87I	CYCGRG	1 cut(s)	30
Aor13HI	TCCGGA	1 cut(s)	793
AoxI	GGCC	3 cut(s)	438, 605, 1001
ApeKI	GCWGC	1 cut(s)	189
AspS9I	GGNCC	2 cut(s)	328, 791
AsuC2I	CCSGG	2 cut(s)	31, 32
AsuHPI	GGTGA	1 cut(s)	541
AsuII	TTCGAA	1 cut(s)	679
AsuNHI	GCTAGC	1 cut(s)	299
AvaI	CYCGRG	1 cut(s)	30
AvaII	GGWCC	2 cut(s)	328, 791
BaeGI	GKGCMC	2 cut(s)	31, 932
BanI	GGYRCC	1 cut(s)	927
BauI	CACGAG	1 cut(s)	372
BbsI	GAAGAC	1 cut(s)	165
Bbv12I	GWGCWC	1 cut(s)	431
BbvI	GCAGC	1 cut(s)	176
BccI	CCATC	8 cut(s)	74, 394, 910, 1072, 1107, 1147, 1177, 1204
BciT130I	CCWGG	1 cut(s)	143
BclI	TGATCA	1 cut(s)	531
BcnI	CCSGG	2 cut(s)	31, 32
BfaI	CTAG	4 cut(s)	185, 300, 492, 588
BfmI	CTRYAG	1 cut(s)	190
BfrI	CTTAAG	1 cut(s)	878
BisI	GCNGC	3 cut(s)	190, 605, 608
BlsI	GCNGC	3 cut(s)	191, 606, 609
Bme1390I	CCNGG	3 cut(s)	31, 32, 143
Bme18I	GGWCC	2 cut(s)	328, 791
BmeT110I	CYCGRG	1 cut(s)	30
BmgBI	CACGTC	1 cut(s)	432
BmgT120I	GGNCC	2 cut(s)	328, 791
BmiI	GGNNCC	3 cut(s)	421, 792, 929
BmrFI	CCNGG	3 cut(s)	31, 32, 143
BmrI	ACTGGG	2 cut(s)	928, 933
BmsI	GCATC	2 cut(s)	813, 984
BmtI	GCTAGC	1 cut(s)	303
BmuI	ACTGGG	2 cut(s)	928, 933
BpiI	GAAGAC	1 cut(s)	165
Bpu10I	CCTNAGC	1 cut(s)	744
Bpu14I	TTCGAA	1 cut(s)	679
BpuEI	CTTGAG	3 cut(s)	292, 434, 755
BpuMI	CCSGG	2 cut(s)	31, 32
Bsa29I	ATCGAT	1 cut(s)	870
BsaJI	CCNNGG	5 cut(s)	30, 142, 324, 1067, 1226
BsaWI	WCCGGW	1 cut(s)	793
Bsc4I	CCNNNNNNNGG	1 cut(s)	578
Bse1I	ACTGG	3 cut(s)	331, 928, 934
BseAI	TCCGGA	1 cut(s)	793
BseBI	CCWGG	1 cut(s)	143
BseCI	ATCGAT	1 cut(s)	870
BseDI	CCNNGG	5 cut(s)	30, 142, 324, 1067, 1226
BseGI	GGATG	3 cut(s)	1015, 1118, 1158
BseLI	CCNNNNNNNGG	1 cut(s)	578
BseMII	CTCAG	4 cut(s)	255, 492, 708, 833
BseNI	ACTGG	3 cut(s)	331, 928, 934
BseRI	GAGGAG	1 cut(s)	647
BseSI	GKGCMC	2 cut(s)	31, 932
BseX3I	CGGCCG	1 cut(s)	605
BseXI	GCAGC	1 cut(s)	176
BseYI	CCCAGC	1 cut(s)	1027
Bsh1285I	CGRYCG	1 cut(s)	608
BshFI	GGCC	3 cut(s)	440, 607, 1003
BshNI	GGYRCC	1 cut(s)	927
BshVI	ATCGAT	1 cut(s)	870
BsiEI	CGRYCG	1 cut(s)	608
BsiHKAI	GWGCWC	1 cut(s)	431
BsiHKCI	CYCGRG	1 cut(s)	30
BsiSI	CCGG	2 cut(s)	31, 794
BslI	CCNNNNNNNGG	1 cut(s)	578
BsmI	GAATGC	2 cut(s)	519, 1031
BsnI	GGCC	3 cut(s)	440, 607, 1003
BsoBI	CYCGRG	1 cut(s)	30
Bsp119I	TTCGAA	1 cut(s)	679
Bsp1286I	GDGCHC	3 cut(s)	31, 431, 932
Bsp13I	TCCGGA	1 cut(s)	793
Bsp143I	GATC	1 cut(s)	531
BspACI	CCGC	3 cut(s)	284, 604, 608
BspANI	GGCC	3 cut(s)	440, 607, 1003
BspCNI	CTCAG	4 cut(s)	256, 493, 709, 834
BspDI	ATCGAT	1 cut(s)	870
BspEI	TCCGGA	1 cut(s)	793
BspHI	TCATGA	1 cut(s)	960
BspLI	GGNNCC	3 cut(s)	421, 792, 929
BspMAI	CTGCAG	1 cut(s)	194
BspOI	GCTAGC	1 cut(s)	303
BspT104I	TTCGAA	1 cut(s)	679
BspT107I	GGYRCC	1 cut(s)	927
BspTI	CTTAAG	1 cut(s)	878
BsrI	ACTGG	3 cut(s)	331, 928, 934
BssECI	CCNNGG	5 cut(s)	30, 142, 324, 1067, 1226
BssMI	GATC	1 cut(s)	531
BssSI	CACGAG	1 cut(s)	372
BssT1I	CCWWGG	2 cut(s)	1067, 1226
Bst2BI	CACGAG	1 cut(s)	372
Bst2UI	CCWGG	1 cut(s)	143
Bst4CI	ACNGT	2 cut(s)	103, 154
Bst6I	CTCTTC	1 cut(s)	463
BstAFI	CTTAAG	1 cut(s)	878
BstAPI	GCANNNNNTGC	1 cut(s)	26
BstBI	TTCGAA	1 cut(s)	679
BstC8I	GCNNGC	2 cut(s)	301, 942
BstDEI	CTNAG	6 cut(s)	264, 501, 717, 744, 842, 968
BstDSI	CCRYGG	1 cut(s)	324
BstF5I	GGATG	3 cut(s)	1015, 1118, 1158
BstKTI	GATC	1 cut(s)	534
BstMBI	GATC	1 cut(s)	531
BstMCI	CGRYCG	1 cut(s)	608
BstMWI	GCNNNNNNNGC	2 cut(s)	26, 1028
BstNI	CCWGG	1 cut(s)	143
BstNSI	RCATGY	1 cut(s)	299
BstSCI	CCNGG	3 cut(s)	29, 30, 141
BstSFI	CTRYAG	1 cut(s)	190
BstSLI	GKGCMC	2 cut(s)	31, 932
BstV1I	GCAGC	1 cut(s)	176
BstV2I	GAAGAC	1 cut(s)	165
BstZI	CGGCCG	1 cut(s)	605
Bsu15I	ATCGAT	1 cut(s)	870
BsuRI	GGCC	3 cut(s)	440, 607, 1003
BsuTUI	ATCGAT	1 cut(s)	870
BtgI	CCRYGG	1 cut(s)	324
BtgZI	GCGATG	1 cut(s)	1176
BtrI	CACGTC	1 cut(s)	432
BtsCI	GGATG	3 cut(s)	1015, 1118, 1158
BtsI	GCAGTG	1 cut(s)	199
BtsIMutI	CAGTG	3 cut(s)	199, 261, 921
Cac8I	GCNNGC	2 cut(s)	301, 942
CciI	TCATGA	1 cut(s)	960
CciNI	GCGGCCGC	1 cut(s)	605
Cfr13I	GGNCC	2 cut(s)	328, 791
Cfr9I	CCCGGG	1 cut(s)	30
ClaI	ATCGAT	1 cut(s)	870
Csp6I	GTAC	1 cut(s)	377
CviAII	CATG	7 cut(s)	208, 296, 424, 674, 856, 961, 1207
CviQI	GTAC	1 cut(s)	377
DdeI	CTNAG	6 cut(s)	264, 501, 717, 744, 842, 968
DpnI	GATC	1 cut(s)	533
DpnII	GATC	1 cut(s)	531
DraIII	CACNNNGTG	1 cut(s)	927
EaeI	YGGCCR	1 cut(s)	605
EagI	CGGCCG	1 cut(s)	605
Eam1104I	CTCTTC	1 cut(s)	463
EarI	CTCTTC	1 cut(s)	463
EclXI	CGGCCG	1 cut(s)	605
Eco130I	CCWWGG	2 cut(s)	1067, 1226
Eco147I	AGGCCT	1 cut(s)	1003
Eco32I	GATATC	4 cut(s)	281, 352, 389, 497
Eco47I	GGWCC	2 cut(s)	328, 791
Eco52I	CGGCCG	1 cut(s)	605
Eco88I	CYCGRG	1 cut(s)	30
EcoRII	CCWGG	1 cut(s)	141
EcoRV	GATATC	4 cut(s)	281, 352, 389, 497
EcoT14I	CCWWGG	2 cut(s)	1067, 1226
EcoT22I	ATGCAT	1 cut(s)	1279
ErhI	CCWWGG	2 cut(s)	1067, 1226
FaeI	CATG	7 cut(s)	211, 299, 427, 677, 859, 964, 1210
FalI	AAGNNNNNCTT	2 cut(s)	675, 707
FatI	CATG	7 cut(s)	207, 295, 423, 673, 855, 960, 1206
FbaI	TGATCA	1 cut(s)	531
Fnu4HI	GCNGC	3 cut(s)	190, 605, 608
FokI	GGATG	3 cut(s)	1022, 1125, 1165
Fsp4HI	GCNGC	3 cut(s)	190, 605, 608
FspBI	CTAG	4 cut(s)	185, 300, 492, 588
GluI	GCNGC	3 cut(s)	190, 605, 608
GsaI	CCCAGC	1 cut(s)	1031
HaeIII	GGCC	3 cut(s)	440, 607, 1003
HapII	CCGG	2 cut(s)	31, 794
Hin1II	CATG	7 cut(s)	211, 299, 427, 677, 859, 964, 1210
HincII	GTYRAC	2 cut(s)	313, 758
HindII	GTYRAC	2 cut(s)	313, 758
HindIII	AAGCTT	2 cut(s)	410, 746
HinfI	GANTC	9 cut(s)	211, 405, 656, 686, 754, 949, 1052, 1187, 1238
HpaII	CCGG	2 cut(s)	31, 794
HphI	GGTGA	1 cut(s)	541
Hpy166II	GTNNAC	4 cut(s)	313, 377, 758, 767
Hpy188I	TCNGA	3 cut(s)	987, 1132, 1249
Hpy8I	GTNNAC	4 cut(s)	313, 377, 758, 767
Hpy99I	CGWCG	1 cut(s)	436
HpyCH4III	ACNGT	2 cut(s)	103, 154
HpyCH4IV	ACGT	1 cut(s)	431
HpyCH4V	TGCA	6 cut(s)	192, 320, 464, 707, 997, 1277
HpyF10VI	GCNNNNNNNGC	2 cut(s)	26, 1028
HpyF3I	CTNAG	6 cut(s)	264, 501, 717, 744, 842, 968
HpySE526I	ACGT	1 cut(s)	431
Hsp92II	CATG	7 cut(s)	211, 299, 427, 677, 859, 964, 1210
Kpn2I	TCCGGA	1 cut(s)	793
Ksp22I	TGATCA	1 cut(s)	531
Kzo9I	GATC	1 cut(s)	531
LmnI	GCTCC	2 cut(s)	88, 118
Lsp1109I	GCAGC	1 cut(s)	176
LweI	GCATC	2 cut(s)	813, 984
MaeI	CTAG	4 cut(s)	185, 300, 492, 588
MaeII	ACGT	1 cut(s)	431
MaeIII	GTNAC	3 cut(s)	97, 919, 1081
MalI	GATC	1 cut(s)	533
MboI	GATC	1 cut(s)	531
MfeI	CAATTG	1 cut(s)	1123
MhlI	GDGCHC	3 cut(s)	31, 431, 932
MluCI	AATT	7 cut(s)	54, 236, 395, 729, 780, 883, 1123
MlyI	GAGTC	2 cut(s)	763, 1247
MnlI	CCTC	9 cut(s)	44, 108, 381, 409, 473, 625, 790, 903, 1085
Mph1103I	ATGCAT	1 cut(s)	1279
MroI	TCCGGA	1 cut(s)	793
MseI	TTAA	2 cut(s)	488, 879
MslI	CAYNNNNRTG	1 cut(s)	434
MspCI	CTTAAG	1 cut(s)	878
MspI	CCGG	2 cut(s)	31, 794
MspR9I	CCNGG	3 cut(s)	31, 32, 143
MunI	CAATTG	1 cut(s)	1123
Mva1269I	GAATGC	2 cut(s)	519, 1031
MvaI	CCWGG	1 cut(s)	143
MwoI	GCNNNNNNNGC	2 cut(s)	26, 1028
NciI	CCSGG	2 cut(s)	31, 32
NdeII	GATC	1 cut(s)	531
NheI	GCTAGC	1 cut(s)	299
NlaIII	CATG	7 cut(s)	211, 299, 427, 677, 859, 964, 1210
NlaIV	GGNNCC	3 cut(s)	421, 792, 929
NmuCI	GTSAC	1 cut(s)	919
NotI	GCGGCCGC	1 cut(s)	605
NsiI	ATGCAT	1 cut(s)	1279
NspI	RCATGY	1 cut(s)	299
NspV	TTCGAA	1 cut(s)	679
OliI	CACNNNNGTG	1 cut(s)	434
PagI	TCATGA	1 cut(s)	960
PceI	AGGCCT	1 cut(s)	1003
PctI	GAATGC	2 cut(s)	519, 1031
PfeI	GAWTC	7 cut(s)	211, 405, 656, 686, 949, 1052, 1187
PkrI	GCNGC	3 cut(s)	191, 606, 609
PleI	GAGTC	2 cut(s)	762, 1246
PpsI	GAGTC	2 cut(s)	762, 1246
Psp6I	CCWGG	1 cut(s)	141
PspFI	CCCAGC	1 cut(s)	1027
PspGI	CCWGG	1 cut(s)	141
PspN4I	GGNNCC	3 cut(s)	421, 792, 929
PspPI	GGNCC	2 cut(s)	328, 791
PstI	CTGCAG	1 cut(s)	194
RsaI	GTAC	1 cut(s)	378
RsaNI	GTAC	1 cut(s)	377
RseI	CAYNNNNRTG	1 cut(s)	434
SaqAI	TTAA	2 cut(s)	488, 879
SatI	GCNGC	3 cut(s)	190, 605, 608
Sau3AI	GATC	1 cut(s)	531
Sau96I	GGNCC	2 cut(s)	328, 791
SchI	GAGTC	2 cut(s)	763, 1247
ScrFI	CCNGG	3 cut(s)	31, 32, 143
SduI	GDGCHC	3 cut(s)	31, 431, 932
SfaNI	GCATC	2 cut(s)	813, 984
SfcI	CTRYAG	1 cut(s)	190
SfuI	TTCGAA	1 cut(s)	679
SinI	GGWCC	2 cut(s)	328, 791
SmaI	CCCGGG	1 cut(s)	32
SmiMI	CAYNNNNRTG	1 cut(s)	434
SmlI	CTYRAG	4 cut(s)	271, 413, 770, 878
SmoI	CTYRAG	4 cut(s)	271, 413, 770, 878
Sse9I	AATT	7 cut(s)	54, 236, 395, 729, 780, 883, 1123
SseBI	AGGCCT	1 cut(s)	1003
SsiI	CCGC	3 cut(s)	284, 604, 608
SspI	AATATT	1 cut(s)	652
SspMI	CTAG	4 cut(s)	185, 300, 492, 588
StuI	AGGCCT	1 cut(s)	1003
StyD4I	CCNGG	3 cut(s)	29, 30, 141
StyI	CCWWGG	2 cut(s)	1067, 1226
TaaI	ACNGT	2 cut(s)	103, 154
TaiI	ACGT	1 cut(s)	434
TaqI	TCGA	3 cut(s)	679, 870, 1203
TasI	AATT	7 cut(s)	54, 236, 395, 729, 780, 883, 1123
TatI	WGTACW	1 cut(s)	376
TauI	GCSGC	2 cut(s)	607, 610
TfiI	GAWTC	7 cut(s)	211, 405, 656, 686, 949, 1052, 1187
Tru1I	TTAA	2 cut(s)	488, 879
Tru9I	TTAA	2 cut(s)	488, 879
TscAI	CASTG	3 cut(s)	199, 268, 928
TseFI	GTSAC	1 cut(s)	919
TseI	GCWGC	1 cut(s)	189
Tsp45I	GTSAC	1 cut(s)	919
TspDTI	ATGAA	5 cut(s)	17, 662, 875, 977, 1223
TspGWI	ACGGA	1 cut(s)	1165
TspMI	CCCGGG	1 cut(s)	30
TspRI	CASTG	3 cut(s)	199, 268, 928
Vha464I	CTTAAG	1 cut(s)	878
VpaK11BI	GGWCC	2 cut(s)	328, 791
XceI	RCATGY	1 cut(s)	299
XmaI	CCCGGG	1 cut(s)	30
XspI	CTAG	4 cut(s)	185, 300, 492, 588
Zsp2I	ATGCAT	1 cut(s)	1279

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.