Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr3

Orthogroup ID

OG0010055

Physical Location & Seq

Genomic Coordinates Forward (+)

21882076 .. 21883641

Gene Structure 1566 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom03g21610.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1566 bp

ATGAAGATCAGATGCTATGCTGGTATTACGAAACCCAGCTTTTTGCTTGTGCATTCAGAGTTACCAGCACTTACATCTCTTAAGCCCGAATTTGATTCTATATCCACGCTTTGCAACCGAGAGAAGTTGATTGGGTTGATAACAAGGTGTCAGTATTCTGTTTCTGGTAGAAGGTCAGAAAGCAGTTATAAGGATTCGTCGGTTTCAAATCCAAACACCACTCGTTTAGGTAGGAGAGAAAGAGGTTCTTCATCCTTATACAGTCGTCCTAGTCTGTTAGATATGAAGAATGAAAGGATGGAAAATCGTGCCCGGGTTTATGATTTCTTGCGAGGAATTGGTATTGTCCCTGATGAGCTTGATGGATTGGAGCTTCCTGTTACAGTTGAAGTTATGAGGGAACGTGTGGATTTTCTTCACAATCTTGGGCTTACAATCGAAGACATTAACAACTATCCACTGGTTCTTGGCTGCAGTGTGAAGAAAAACATGATTCCTGTGCTCGATTATCTTGGGAAGTTGGGTGTTAGGAAATCCACATTCACTGAGTTCTTGAGAAGATACCCACAAGTCCTGCATGCTAGTGTTGTTATTGACCTTTCACCAGTGGTCAAGTATCTTCAAGGAATGGATATCAAACCCGATGACATTCCTCGGGTTCTTGAGAAATATCCAGAAGTGTTGGGATTCAAGCTTGAGGGGACCATGAGCACTTCGGTGGCTTACCTTGTTGGAATTGGGGTTGCAAGAAGGGAGATTGGCGGAGTTTTAACTAGATACCCAGAGATTTTAGGGATGCGTGTGGGTAGGGTGATCAAGCCGTTTGTTGAATATCTTGAAGCGTTGGGTATTCCAAGACTAGGTGTGGCTAGGCTGATAGAAAAGCGACCTCACATCCTTGGGTTTGGATTGGAGGAGAGGGTGAAACCGAATATTCAATCCCTTTTGGAGTTTTGTGTACGAGAAGAATCACTTGCTTCTGTAGTGGCACAATATCCTGAGATCATAGGAATTGATCTCAAGCCTAAGCTTCTCGGTCAACAAAGTTCGCTCAAGTCGGTAATTGATTTGGAACCCGAGGACTTTGGCAGAGTTGTTGAGAAGATGCCTCAGGTTGTTAGCCTCAGTGATAGACCTATGATGAAGCATGTCGATTTCCTTAAGAATTGTGGATTTTCCTTGGAGCAAGTGAGGAAGATGGTCGTCGGGTGTCCCCAGTTGCTTGCCTTGAATCTCGACATCATGAAACTCAGCTTTGATTTCTTTCAAACAGAGATGCAAAGGCCTTTGGATGACTTGGTTGCTTTCCCTGCATTCTTTACTTACGGTCTTGAATCGACTATAAAACCAAGACATAAGATGGTTTCAAAGAAAGGGTTGAAATGCTCCCTCGGGTGGCTTCTCAACTGCTCCGATGAAAAGTTTGCGCAACGAATGGACTACGACACTATTGACATGGAGGAGATGGAATCATTACCGTCATTTGATATGAATACGCTCACAGAACCAAGGAGCGACGATTCAGGTTCTGACTGCGATGATGATAGCGATGACGATTATGTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003676 GO:0003723 GO:0003727 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006351 GO:0006396 GO:0006725 GO:0006807 GO:0006996 GO:0007275 GO:0008150 GO:0008152 GO:0008380 GO:0009058 GO:0009059 GO:0009303 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009657 GO:0009658 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0010467 GO:0016043 GO:0016070 GO:0016072 GO:0018130 GO:0019438 GO:0019843 GO:0022414 GO:0022607 GO:0022613 GO:0022618 GO:0032501 GO:0032502 GO:0032774 GO:0034622 GO:0034641 GO:0034645 GO:0034654 GO:0034660 GO:0042254 GO:0042255 GO:0042793 GO:0042794 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0061458 GO:0065003 GO:0070925 GO:0071704 GO:0071826 GO:0071840 GO:0090304 GO:0097159 GO:0097659 GO:0098781 GO:1901360 GO:1901362 GO:1901363 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

mTERF

Protein Analysis

522

Amino Acids

58.97

Weight (kDa)

5.78

Isoelectric Point (pI)

44.29

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
mTERF	PF02536	168 - 476	9.6e-111	mTERF

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010055)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G02990 AT4G02990
fragaria_vesca	FvH4_2g24160 FvH4_2g24160
malus_domestica	MD03G1271600.v1.1 MD11G1292200.v1.1
prunus_persica	Prupe.8G247800_v2.0.a1
pyrus_communis	pycom03g21610 pycom11g25870
rosa_chinensis	RchiOBHm_Chr6g0291971
rosa_laevigata	RLG00000012074
rosa_multiflora	Rmu_co8409065.1_g000001 Rmu_sc0026994.1_g000002
rosa_roxburghii	Rroxscaffold_7G00175540 Rroxscaffold_7G00178000
rosa_rugosa	Rorug06G0222200
rosa_samantha	Rh6AG335900 Rh6BG343300 Rh6CG349500 Rh6DG336300
rosa_wichuraiana	Rw6G029240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	189
Acc16I	TGCGCA	1 cut(s)	1428
AciI	CCGC	1 cut(s)	762
AcsI	RAATTY	1 cut(s)	89
AfaI	GTAC	1 cut(s)	960
AfiI	CCNNNNNNNGG	2 cut(s)	860, 1395
AflII	CTTAAG	2 cut(s)	80, 1160
AflIII	ACRYGT	1 cut(s)	403
AleI	CACNNNNGTG	1 cut(s)	716
AluBI	AGCT	6 cut(s)	39, 358, 373, 694, 1030, 1254
AluI	AGCT	6 cut(s)	39, 358, 373, 694, 1030, 1254
Alw21I	GWGCWC	2 cut(s)	504, 713
AlwNI	CAGNNNCTG	1 cut(s)	1529
Ama87I	CYCGRG	4 cut(s)	312, 654, 1076, 1391
AoxI	GGCC	1 cut(s)	1283
ApeKI	GCWGC	1 cut(s)	471
ApoI	RAATTY	1 cut(s)	89
AspLEI	GCGC	1 cut(s)	1429
AspS9I	GGNCC	1 cut(s)	702
AsuC2I	CCSGG	2 cut(s)	313, 314
AsuHPI	GGTGA	3 cut(s)	594, 823, 934
AvaI	CYCGRG	4 cut(s)	312, 654, 1076, 1391
AvaII	GGWCC	1 cut(s)	702
AxyI	CCTNAGG	1 cut(s)	1110
BaeGI	GKGCMC	1 cut(s)	313
BbsI	GAAGAC	1 cut(s)	447
Bbv12I	GWGCWC	2 cut(s)	504, 713
BbvI	GCAGC	1 cut(s)	458
BccI	CCATC	5 cut(s)	292, 356, 1192, 1354, 1459
BceAI	ACGGC	1 cut(s)	805
BclI	TGATCA	1 cut(s)	813
BcnI	CCSGG	2 cut(s)	313, 314
BfaI	CTAG	5 cut(s)	270, 582, 774, 860, 870
BfmI	CTRYAG	2 cut(s)	472, 981
BfrI	CTTAAG	2 cut(s)	80, 1160
BisI	GCNGC	1 cut(s)	472
BlsI	GCNGC	1 cut(s)	473
Bme1390I	CCNGG	2 cut(s)	313, 314
Bme18I	GGWCC	1 cut(s)	702
BmeT110I	CYCGRG	4 cut(s)	312, 654, 1076, 1391
BmgT120I	GGNCC	1 cut(s)	702
BmiI	GGNNCC	2 cut(s)	703, 1074
BmrFI	CCNGG	2 cut(s)	313, 314
BmrI	ACTGGG	1 cut(s)	1210
BmsI	GCATC	4 cut(s)	2, 786, 1095, 1266
BmuI	ACTGGG	1 cut(s)	1210
BpiI	GAAGAC	1 cut(s)	447
Bpu10I	CCTNAGC	1 cut(s)	1026
BpuEI	CTTGAG	5 cut(s)	574, 683, 716, 1004, 1037
BpuMI	CCSGG	2 cut(s)	313, 314
BsaJI	CCNNGG	7 cut(s)	312, 653, 898, 1077, 1179, 1390, 1508
Bsc4I	CCNNNNNNNGG	2 cut(s)	860, 1395
Bse1I	ACTGG	3 cut(s)	465, 605, 1216
Bse21I	CCTNAGG	1 cut(s)	1110
BseDI	CCNNGG	7 cut(s)	312, 653, 898, 1077, 1179, 1390, 1508
BseGI	GGATG	5 cut(s)	251, 303, 801, 894, 1297
BseLI	CCNNNNNNNGG	2 cut(s)	860, 1395
BseMII	CTCAG	5 cut(s)	537, 990, 1124, 1138, 1264
BseNI	ACTGG	3 cut(s)	465, 605, 1216
BseRI	GAGGAG	2 cut(s)	929, 1475
BseSI	GKGCMC	1 cut(s)	313
BseXI	GCAGC	1 cut(s)	458
BseYI	CCCAGC	1 cut(s)	35
BshFI	GGCC	1 cut(s)	1285
BsiHKAI	GWGCWC	2 cut(s)	504, 713
BsiHKCI	CYCGRG	4 cut(s)	312, 654, 1076, 1391
BsiSI	CCGG	1 cut(s)	313
BslFI	GGGAC	3 cut(s)	332, 715, 1197
BslI	CCNNNNNNNGG	2 cut(s)	860, 1395
BsmFI	GGGAC	3 cut(s)	332, 715, 1197
BsmI	GAATGC	2 cut(s)	52, 1313
BsnI	GGCC	1 cut(s)	1285
BsoBI	CYCGRG	4 cut(s)	312, 654, 1076, 1391
Bsp1286I	GDGCHC	3 cut(s)	313, 504, 713
Bsp143I	GATC	4 cut(s)	6, 813, 1002, 1015
BspACI	CCGC	1 cut(s)	762
BspANI	GGCC	1 cut(s)	1285
BspCNI	CTCAG	5 cut(s)	538, 991, 1123, 1137, 1263
BspHI	TCATGA	1 cut(s)	1242
BspLI	GGNNCC	2 cut(s)	703, 1074
BspMAI	CTGCAG	1 cut(s)	476
BspTI	CTTAAG	2 cut(s)	80, 1160
BsrI	ACTGG	3 cut(s)	465, 605, 1216
BssECI	CCNNGG	7 cut(s)	312, 653, 898, 1077, 1179, 1390, 1508
BssMI	GATC	4 cut(s)	6, 813, 1002, 1015
BssT1I	CCWWGG	3 cut(s)	898, 1179, 1508
Bst4CI	ACNGT	4 cut(s)	263, 385, 1328, 1479
BstAFI	CTTAAG	2 cut(s)	80, 1160
BstC8I	GCNNGC	2 cut(s)	579, 1224
BstDEI	CTNAG	6 cut(s)	546, 999, 1026, 1110, 1124, 1250
BstF5I	GGATG	5 cut(s)	251, 303, 801, 894, 1297
BstHHI	GCGC	1 cut(s)	1429
BstKTI	GATC	4 cut(s)	9, 816, 1005, 1018
BstMBI	GATC	4 cut(s)	6, 813, 1002, 1015
BstMWI	GCNNNNNNNGC	1 cut(s)	1310
BstNSI	RCATGY	2 cut(s)	581, 1151
BstSCI	CCNGG	2 cut(s)	311, 312
BstSFI	CTRYAG	2 cut(s)	472, 981
BstSLI	GKGCMC	1 cut(s)	313
BstV1I	GCAGC	1 cut(s)	458
BstV2I	GAAGAC	1 cut(s)	447
Bsu36I	CCTNAGG	1 cut(s)	1110
BsuRI	GGCC	1 cut(s)	1285
BtgZI	GCGATG	1 cut(s)	1551
BtsCI	GGATG	5 cut(s)	251, 303, 801, 894, 1297
BtsI	GCAGTG	1 cut(s)	481
BtsIMutI	CAGTG	5 cut(s)	458, 481, 543, 612, 1132
Cac8I	GCNNGC	2 cut(s)	579, 1224
CaiI	CAGNNNCTG	1 cut(s)	1529
CciI	TCATGA	1 cut(s)	1242
CfoI	GCGC	1 cut(s)	1429
Cfr13I	GGNCC	1 cut(s)	702
Cfr9I	CCCGGG	1 cut(s)	312
Csp6I	GTAC	1 cut(s)	959
CviAII	CATG	6 cut(s)	490, 578, 706, 1148, 1243, 1456
CviQI	GTAC	1 cut(s)	959
DdeI	CTNAG	6 cut(s)	546, 999, 1026, 1110, 1124, 1250
DpnI	GATC	4 cut(s)	8, 815, 1004, 1017
DpnII	GATC	4 cut(s)	6, 813, 1002, 1015
EciI	GGCGGA	1 cut(s)	777
Eco130I	CCWWGG	3 cut(s)	898, 1179, 1508
Eco147I	AGGCCT	1 cut(s)	1285
Eco32I	GATATC	1 cut(s)	634
Eco47I	GGWCC	1 cut(s)	702
Eco81I	CCTNAGG	1 cut(s)	1110
Eco88I	CYCGRG	4 cut(s)	312, 654, 1076, 1391
EcoRV	GATATC	1 cut(s)	634
EcoT14I	CCWWGG	3 cut(s)	898, 1179, 1508
ErhI	CCWWGG	3 cut(s)	898, 1179, 1508
FaeI	CATG	6 cut(s)	493, 581, 709, 1151, 1246, 1459
FalI	AAGNNNNNCTT	4 cut(s)	232, 264, 957, 989
FaqI	GGGAC	3 cut(s)	332, 715, 1197
FatI	CATG	6 cut(s)	489, 577, 705, 1147, 1242, 1455
FbaI	TGATCA	1 cut(s)	813
Fnu4HI	GCNGC	1 cut(s)	472
FokI	GGATG	5 cut(s)	238, 310, 808, 881, 1304
Fsp4HI	GCNGC	1 cut(s)	472
FspBI	CTAG	5 cut(s)	270, 582, 774, 860, 870
FspI	TGCGCA	1 cut(s)	1428
GlaI	GCGC	1 cut(s)	1428
GluI	GCNGC	1 cut(s)	472
GsaI	CCCAGC	1 cut(s)	39
HaeIII	GGCC	1 cut(s)	1285
HapII	CCGG	1 cut(s)	313
HhaI	GCGC	1 cut(s)	1429
Hin1II	CATG	6 cut(s)	493, 581, 709, 1151, 1246, 1459
Hin6I	GCGC	1 cut(s)	1427
HinP1I	GCGC	1 cut(s)	1427
HincII	GTYRAC	1 cut(s)	1040
HindII	GTYRAC	1 cut(s)	1040
HindIII	AAGCTT	2 cut(s)	692, 1028
HinfI	GANTC	9 cut(s)	95, 194, 493, 687, 968, 1231, 1334, 1469, 1520
HpaII	CCGG	1 cut(s)	313
HphI	GGTGA	3 cut(s)	594, 823, 934
Hpy166II	GTNNAC	2 cut(s)	959, 1040
Hpy188I	TCNGA	5 cut(s)	11, 58, 178, 1414, 1531
Hpy188III	TCNNGA	8 cut(s)	553, 662, 674, 836, 998, 1235, 1243, 1331
Hpy8I	GTNNAC	2 cut(s)	959, 1040
Hpy99I	CGWCG	3 cut(s)	202, 1208, 1520
HpyAV	CCTTC	2 cut(s)	165, 744
HpyCH4III	ACNGT	4 cut(s)	263, 385, 1328, 1479
HpyCH4IV	ACGT	1 cut(s)	403
HpyCH4V	TGCA	7 cut(s)	52, 114, 474, 577, 746, 1279, 1313
HpyF10VI	GCNNNNNNNGC	1 cut(s)	1310
HpyF3I	CTNAG	6 cut(s)	546, 999, 1026, 1110, 1124, 1250
HpySE526I	ACGT	1 cut(s)	403
Hsp92II	CATG	6 cut(s)	493, 581, 709, 1151, 1246, 1459
HspAI	GCGC	1 cut(s)	1427
Ksp22I	TGATCA	1 cut(s)	813
Kzo9I	GATC	4 cut(s)	6, 813, 1002, 1015
LmnI	GCTCC	5 cut(s)	370, 1183, 1391, 1415, 1512
Lsp1109I	GCAGC	1 cut(s)	458
LweI	GCATC	4 cut(s)	2, 786, 1095, 1266
MaeI	CTAG	5 cut(s)	270, 582, 774, 860, 870
MaeII	ACGT	1 cut(s)	403
MaeIII	GTNAC	2 cut(s)	60, 379
MalI	GATC	4 cut(s)	8, 815, 1004, 1017
MboI	GATC	4 cut(s)	6, 813, 1002, 1015
MhlI	GDGCHC	3 cut(s)	313, 504, 713
MluCI	AATT	6 cut(s)	89, 336, 735, 1011, 1062, 1165
MmeI	TCCRAC	1 cut(s)	712
MseI	TTAA	4 cut(s)	81, 447, 770, 1161
MslI	CAYNNNNRTG	2 cut(s)	582, 716
MspCI	CTTAAG	2 cut(s)	80, 1160
MspI	CCGG	1 cut(s)	313
MspR9I	CCNGG	2 cut(s)	313, 314
Mva1269I	GAATGC	2 cut(s)	52, 1313
MwoI	GCNNNNNNNGC	1 cut(s)	1310
NciI	CCSGG	2 cut(s)	313, 314
NdeII	GATC	4 cut(s)	6, 813, 1002, 1015
NlaIII	CATG	6 cut(s)	493, 581, 709, 1151, 1246, 1459
NlaIV	GGNNCC	2 cut(s)	703, 1074
NsbI	TGCGCA	1 cut(s)	1428
NspI	RCATGY	2 cut(s)	581, 1151
OliI	CACNNNNGTG	1 cut(s)	716
PaeI	GCATGC	1 cut(s)	581
PagI	TCATGA	1 cut(s)	1242
PceI	AGGCCT	1 cut(s)	1285
PctI	GAATGC	2 cut(s)	52, 1313
PfeI	GAWTC	9 cut(s)	95, 194, 493, 687, 968, 1231, 1334, 1469, 1520
PkrI	GCNGC	1 cut(s)	473
PsiI	TTATAA	1 cut(s)	189
PspFI	CCCAGC	1 cut(s)	35
PspN4I	GGNNCC	2 cut(s)	703, 1074
PspPI	GGNCC	1 cut(s)	702
PstI	CTGCAG	1 cut(s)	476
PstNI	CAGNNNCTG	1 cut(s)	1529
RsaI	GTAC	1 cut(s)	960
RsaNI	GTAC	1 cut(s)	959
RseI	CAYNNNNRTG	2 cut(s)	582, 716
SaqAI	TTAA	4 cut(s)	81, 447, 770, 1161
SatI	GCNGC	1 cut(s)	472
Sau3AI	GATC	4 cut(s)	6, 813, 1002, 1015
Sau96I	GGNCC	1 cut(s)	702
ScrFI	CCNGG	2 cut(s)	313, 314
SduI	GDGCHC	3 cut(s)	313, 504, 713
SfaNI	GCATC	4 cut(s)	2, 786, 1095, 1266
SfcI	CTRYAG	2 cut(s)	472, 981
SinI	GGWCC	1 cut(s)	702
SmaI	CCCGGG	1 cut(s)	314
SmiMI	CAYNNNNRTG	2 cut(s)	582, 716
SmlI	CTYRAG	7 cut(s)	80, 553, 662, 695, 1019, 1052, 1160
SmoI	CTYRAG	7 cut(s)	80, 553, 662, 695, 1019, 1052, 1160
SphI	GCATGC	1 cut(s)	581
Sse9I	AATT	6 cut(s)	89, 336, 735, 1011, 1062, 1165
SseBI	AGGCCT	1 cut(s)	1285
SsiI	CCGC	1 cut(s)	762
SspI	AATATT	1 cut(s)	934
SspMI	CTAG	5 cut(s)	270, 582, 774, 860, 870
StuI	AGGCCT	1 cut(s)	1285
StyD4I	CCNGG	2 cut(s)	311, 312
StyI	CCWWGG	3 cut(s)	898, 1179, 1508
TaaI	ACNGT	4 cut(s)	263, 385, 1328, 1479
TaiI	ACGT	1 cut(s)	406
TaqI	TCGA	5 cut(s)	438, 504, 1152, 1236, 1337
TaqII	GACCGA	1 cut(s)	1025
TasI	AATT	6 cut(s)	89, 336, 735, 1011, 1062, 1165
TfiI	GAWTC	9 cut(s)	95, 194, 493, 687, 968, 1231, 1334, 1469, 1520
Tru1I	TTAA	4 cut(s)	81, 447, 770, 1161
Tru9I	TTAA	4 cut(s)	81, 447, 770, 1161
TscAI	CASTG	5 cut(s)	465, 481, 550, 612, 1132
TseI	GCWGC	1 cut(s)	471
TspDTI	ATGAA	8 cut(s)	17, 240, 299, 306, 1157, 1259, 1431, 1505
TspMI	CCCGGG	1 cut(s)	312
TspRI	CASTG	5 cut(s)	465, 481, 550, 612, 1132
Vha464I	CTTAAG	2 cut(s)	80, 1160
VpaK11BI	GGWCC	1 cut(s)	702
XapI	RAATTY	1 cut(s)	89
XceI	RCATGY	2 cut(s)	581, 1151
XmaI	CCCGGG	1 cut(s)	312
XspI	CTAG	5 cut(s)	270, 582, 774, 860, 870

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.