AT4G03420

BEST Arabidopsis thaliana protein match is Protein of

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0012257
Physical Location & Seq
Forward (+)
1511597 .. 1514072
2476 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G03420.1

Sequence Viewer

Length: 933 bp
ATGGTGTTTGGAAAAGGGTCAAACCTTGACAGATTCCTTCATTGCACAACACCTGTAGTGCCACCCCAATCTCTATCCAAGGCGGAGATTAGGAGTTTGAATAGGATTTGGCATCCATGGGAGAGACAAAAGGTTGAGTTTTTCAGATTGAGTGATCTATGGGATTGTTATGATGAATGGAGTGCTTATGGAGCTGGTGTTCCAATTCGTCTCTCTAATGGAGAATCTCTTGTTCAATATTATGTTCCCTATCTCTCTGCTATTCAGATTTTCACCTCTCGTTCTTCCTTGATCCGCTTAAGGGATGATTCTGAAGATGGGGAAAGCAGAGATTCGTTTAGTGATTCATATAGTGATGAGAGTGAAAGTGATAAACTTTCGAGATGTGCTTCTGATGAAGGACTTGAACATGACGCTCTCTTGCATCCTAATGATCGGTTGGGATATCTTTATCTGCAATACTTTGAGAGATCAGCTCCTTATGCTCGAGTTCCTCTCATGGATAAGATCAATGAATTGGCTCAAAGGTACCCGGGACTAATGTCGTTGCGAAGCGTAGATCTTTCCCCGGCAAGTTGGATGGCGGTAGCGTGGTACCCTATTTACCATATTCCAATGGGAAGGACCATCAAAGATTTGTCCACTTGTTTCCTCACTTATCACACTCTTTCATCTTCTTTCCAAGATATGGAGCCAGAAGAAAATGGCGGGGAAAAGGAGAGGATCCGGAAGGAAGGAGAAGGTGTAACTTTGCTTCCTTTTGGGTTAGCCACTTATAAGATGCAAGGCAATGTTTGGCTCTCGGAAGACGATCAAGGTCAAGATCAAGAGCGAGTTCTTTCGCTTCTAAGTGTTGCGGATTCTTGGCTAAAACAGCTAAGAGTCCAACACCATGACTTCAACTACTTCTCAAGAATGGCTCACCGTGGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF789

Protein Analysis

310

Amino Acids

35.81

Weight (kDa)

5.25

Isoelectric Point (pI)

49.12

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF789 PF05623 7 - 303 5.8e-111 Protein of unknown function (DUF789)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012257)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G03420
fragaria_vesca FvH4_6g45060 FvH4_6g45060
malus_domestica MD09G1090400.v1.1 MD17G1079500.v1.1
prunus_persica Prupe.3G235200_v2.0.a1 Prupe.3G235200_v2.0.a1
pyrus_communis pycom09g01510 pycom17g07850
rosa_chinensis RchiOBHm_Chr2g0162411
rosa_laevigata RLG00000021345
rosa_multiflora Rmu_sc0004020.1_g000002
rosa_roxburghii Rroxscaffold_2G00087950
rosa_rugosa Rorug02G0497800
rosa_samantha Rh2AG563500 Rh2BG576200 Rh2CG546300 Rh2DG586200
rosa_wichuraiana Rw2G046640

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 777
Acc65I GGTACC 2 cut(s) 528, 594
AccB1I GGYRCC 2 cut(s) 528, 594
AccB7I CCANNNNNTGG 1 cut(s) 688
AccIII TCCGGA 1 cut(s) 726
AciI CCGC 5 cut(s) 83, 295, 584, 708, 857
AclWI GGATC 3 cut(s) 286, 718, 731
AcuI CTGAAG 1 cut(s) 333
AfaI GTAC 2 cut(s) 530, 596
AfiI CCNNNNNNNGG 2 cut(s) 301, 688
AflII CTTAAG 1 cut(s) 298
AgsI TTSAA 4 cut(s) 100, 236, 407, 901
AloI GAACNNNNNNTCC 2 cut(s) 183, 215
AluBI AGCT 3 cut(s) 194, 476, 877
AluI AGCT 3 cut(s) 194, 476, 877
Alw26I GTCTC 2 cut(s) 118, 215
AlwI GGATC 3 cut(s) 286, 718, 731
Ama87I CYCGRG 2 cut(s) 486, 532
Aor13HI TCCGGA 1 cut(s) 726
Asp718I GGTACC 2 cut(s) 528, 594
AspS9I GGNCC 1 cut(s) 624
AsuC2I CCSGG 3 cut(s) 533, 534, 569
AsuHPI GGTGA 2 cut(s) 265, 914
AvaI CYCGRG 2 cut(s) 486, 532
AvaII GGWCC 1 cut(s) 624
BamHI GGATCC 1 cut(s) 723
BanI GGYRCC 2 cut(s) 528, 594
BarI GAAGNNNNNNTAC 2 cut(s) 738, 770
BbsI GAAGAC 1 cut(s) 813
BccI CCATC 3 cut(s) 311, 574, 635
BcnI CCSGG 3 cut(s) 533, 534, 569
BcoDI GTCTC 2 cut(s) 118, 215
BfmI CTRYAG 1 cut(s) 54
BfrI CTTAAG 1 cut(s) 298
BglII AGATCT 1 cut(s) 559
Bme1390I CCNGG 3 cut(s) 533, 534, 569
Bme18I GGWCC 1 cut(s) 624
BmeT110I CYCGRG 2 cut(s) 486, 532
BmgT120I GGNCC 1 cut(s) 624
BmiI GGNNCC 4 cut(s) 530, 596, 693, 725
BmrFI CCNGG 3 cut(s) 533, 534, 569
BmsI GCATC 3 cut(s) 121, 433, 771
BoxI GACNNNNGTC 1 cut(s) 541
BpiI GAAGAC 1 cut(s) 813
BplI GAGNNNNNCTC 4 cut(s) 460, 492, 480, 512
BpuEI CTTGAG 1 cut(s) 895
BpuMI CCSGG 3 cut(s) 533, 534, 569
BsaJI CCNNGG 5 cut(s) 78, 116, 532, 567, 925
BsaWI WCCGGW 1 cut(s) 726
BsaXI ACNNNNNCTCC 4 cut(s) 183, 213, 729, 759
Bsc4I CCNNNNNNNGG 2 cut(s) 301, 688
Bse3DI GCAATG 2 cut(s) 40, 796
BseAI TCCGGA 1 cut(s) 726
BseDI CCNNGG 5 cut(s) 78, 116, 532, 567, 925
BseGI GGATG 4 cut(s) 112, 310, 424, 585
BseLI CCNNNNNNNGG 2 cut(s) 301, 688
BseMI GCAATG 2 cut(s) 40, 796
BshNI GGYRCC 2 cut(s) 528, 594
BsiHKCI CYCGRG 2 cut(s) 486, 532
BsiSI CCGG 3 cut(s) 533, 569, 727
BslFI GGGAC 1 cut(s) 549
BslI CCNNNNNNNGG 2 cut(s) 301, 688
BsmAI GTCTC 2 cut(s) 118, 215
BsmBI CGTCTC 1 cut(s) 215
BsmFI GGGAC 1 cut(s) 549
BsoBI CYCGRG 2 cut(s) 486, 532
Bsp13I TCCGGA 1 cut(s) 726
Bsp143I GATC 9 cut(s) 154, 291, 433, 470, 507, 559, 723, 811, 823
Bsp19I CCATGG 1 cut(s) 116
BspACI CCGC 5 cut(s) 83, 295, 584, 708, 857
BspEI TCCGGA 1 cut(s) 726
BspLI GGNNCC 4 cut(s) 530, 596, 693, 725
BspPI GGATC 3 cut(s) 286, 718, 731
BspT107I GGYRCC 2 cut(s) 528, 594
BspTI CTTAAG 1 cut(s) 298
BsrDI GCAATG 2 cut(s) 40, 796
BssECI CCNNGG 5 cut(s) 78, 116, 532, 567, 925
BssMI GATC 9 cut(s) 154, 291, 433, 470, 507, 559, 723, 811, 823
BssT1I CCWWGG 2 cut(s) 78, 116
Bst4CI ACNGT 1 cut(s) 926
BstAFI CTTAAG 1 cut(s) 298
BstDEI CTNAG 2 cut(s) 848, 878
BstDSI CCRYGG 2 cut(s) 116, 925
BstF5I GGATG 4 cut(s) 112, 310, 424, 585
BstKTI GATC 9 cut(s) 157, 294, 436, 473, 510, 562, 726, 814, 826
BstMAI GTCTC 2 cut(s) 118, 215
BstMBI GATC 9 cut(s) 154, 291, 433, 470, 507, 559, 723, 811, 823
BstMWI GCNNNNNNNGC 3 cut(s) 191, 482, 874
BstPAI GACNNNNGTC 1 cut(s) 541
BstSCI CCNGG 3 cut(s) 531, 532, 567
BstSFI CTRYAG 1 cut(s) 54
BstV2I GAAGAC 1 cut(s) 813
BstX2I RGATCY 2 cut(s) 559, 723
BstYI RGATCY 2 cut(s) 559, 723
BtgI CCRYGG 2 cut(s) 116, 925
BtsCI GGATG 4 cut(s) 112, 310, 424, 585
Cfr13I GGNCC 1 cut(s) 624
Cfr9I CCCGGG 1 cut(s) 532
CseI GACGC 1 cut(s) 422
Csp6I GTAC 2 cut(s) 529, 595
CviAII CATG 4 cut(s) 117, 410, 499, 893
CviQI GTAC 2 cut(s) 529, 595
DdeI CTNAG 2 cut(s) 848, 878
DpnI GATC 9 cut(s) 156, 293, 435, 472, 509, 561, 725, 813, 825
DpnII GATC 9 cut(s) 154, 291, 433, 470, 507, 559, 723, 811, 823
EciI GGCGGA 1 cut(s) 98
Eco130I CCWWGG 2 cut(s) 78, 116
Eco32I GATATC 1 cut(s) 446
Eco47I GGWCC 1 cut(s) 624
Eco57I CTGAAG 1 cut(s) 333
Eco88I CYCGRG 2 cut(s) 486, 532
EcoRV GATATC 1 cut(s) 446
EcoT14I CCWWGG 2 cut(s) 78, 116
ErhI CCWWGG 2 cut(s) 78, 116
Esp3I CGTCTC 1 cut(s) 215
FaeI CATG 4 cut(s) 120, 413, 502, 896
FaqI GGGAC 1 cut(s) 549
FatI CATG 4 cut(s) 116, 409, 498, 892
FauI CCCGC 1 cut(s) 701
FokI GGATG 4 cut(s) 99, 317, 411, 592
HapII CCGG 3 cut(s) 533, 569, 727
HgaI GACGC 1 cut(s) 422
Hin1II CATG 4 cut(s) 120, 413, 502, 896
HinfI GANTC 7 cut(s) 33, 224, 308, 332, 344, 860, 882
HpaII CCGG 3 cut(s) 533, 569, 727
HphI GGTGA 2 cut(s) 265, 914
Hpy166II GTNNAC 1 cut(s) 642
Hpy188I TCNGA 5 cut(s) 146, 267, 313, 394, 805
Hpy188III TCNNGA 5 cut(s) 381, 727, 821, 827, 912
Hpy8I GTNNAC 1 cut(s) 642
HpyAV CCTTC 6 cut(s) 47, 392, 615, 724, 728, 734
HpyCH4III ACNGT 1 cut(s) 926
HpyCH4V TGCA 4 cut(s) 45, 424, 457, 784
HpyF10VI GCNNNNNNNGC 3 cut(s) 191, 482, 874
HpyF3I CTNAG 2 cut(s) 848, 878
Hsp92II CATG 4 cut(s) 120, 413, 502, 896
Kpn2I TCCGGA 1 cut(s) 726
KpnI GGTACC 2 cut(s) 532, 598
Kzo9I GATC 9 cut(s) 154, 291, 433, 470, 507, 559, 723, 811, 823
LmnI GCTCC 3 cut(s) 191, 481, 691
LpnPI CCDG 6 cut(s) 66, 180, 546, 582, 708, 740
LweI GCATC 3 cut(s) 121, 433, 771
MaeIII GTNAC 1 cut(s) 745
MalI GATC 9 cut(s) 156, 293, 435, 472, 509, 561, 725, 813, 825
MboI GATC 9 cut(s) 154, 291, 433, 470, 507, 559, 723, 811, 823
MboII GAAGA 5 cut(s) 276, 326, 666, 710, 818
MflI RGATCY 2 cut(s) 559, 723
MluCI AATT 2 cut(s) 204, 515
MlyI GAGTC 1 cut(s) 891
MmeI TCCRAC 2 cut(s) 557, 910
MnlI CCTC 4 cut(s) 286, 504, 662, 714
MroI TCCGGA 1 cut(s) 726
MseI TTAA 1 cut(s) 299
MslI CAYNNNNRTG 1 cut(s) 429
MspCI CTTAAG 1 cut(s) 298
MspI CCGG 3 cut(s) 533, 569, 727
MspR9I CCNGG 3 cut(s) 533, 534, 569
MwoI GCNNNNNNNGC 3 cut(s) 191, 482, 874
NciI CCSGG 3 cut(s) 533, 534, 569
NcoI CCATGG 1 cut(s) 116
NdeII GATC 9 cut(s) 154, 291, 433, 470, 507, 559, 723, 811, 823
NlaIII CATG 4 cut(s) 120, 413, 502, 896
NlaIV GGNNCC 4 cut(s) 530, 596, 693, 725
PaeR7I CTCGAG 1 cut(s) 486
PfeI GAWTC 6 cut(s) 33, 224, 308, 332, 344, 860
PflMI CCANNNNNTGG 1 cut(s) 688
PleI GAGTC 1 cut(s) 890
PpsI GAGTC 1 cut(s) 890
PshAI GACNNNNGTC 1 cut(s) 541
PsiI TTATAA 1 cut(s) 777
PspN4I GGNNCC 4 cut(s) 530, 596, 693, 725
PspPI GGNCC 1 cut(s) 624
PspXI VCTCGAGB 1 cut(s) 486
PsuI RGATCY 2 cut(s) 559, 723
RsaI GTAC 2 cut(s) 530, 596
RsaNI GTAC 2 cut(s) 529, 595
RseI CAYNNNNRTG 1 cut(s) 429
SaqAI TTAA 1 cut(s) 299
Sau3AI GATC 9 cut(s) 154, 291, 433, 470, 507, 559, 723, 811, 823
Sau96I GGNCC 1 cut(s) 624
SchI GAGTC 1 cut(s) 891
ScrFI CCNGG 3 cut(s) 533, 534, 569
SfaNI GCATC 3 cut(s) 121, 433, 771
SfcI CTRYAG 1 cut(s) 54
Sfr274I CTCGAG 1 cut(s) 486
SinI GGWCC 1 cut(s) 624
SlaI CTCGAG 1 cut(s) 486
SmaI CCCGGG 1 cut(s) 534
SmiMI CAYNNNNRTG 1 cut(s) 429
SmlI CTYRAG 3 cut(s) 298, 486, 910
SmoI CTYRAG 3 cut(s) 298, 486, 910
Sse9I AATT 2 cut(s) 204, 515
SsiI CCGC 5 cut(s) 83, 295, 584, 708, 857
SspI AATATT 1 cut(s) 239
StyD4I CCNGG 3 cut(s) 531, 532, 567
StyI CCWWGG 2 cut(s) 78, 116
TaaI ACNGT 1 cut(s) 926
TaqI TCGA 2 cut(s) 380, 487
TasI AATT 2 cut(s) 204, 515
TfiI GAWTC 6 cut(s) 33, 224, 308, 332, 344, 860
Tru1I TTAA 1 cut(s) 299
Tru9I TTAA 1 cut(s) 299
TspDTI ATGAA 6 cut(s) 29, 189, 336, 411, 528, 660
TspMI CCCGGG 1 cut(s) 532
Van91I CCANNNNNTGG 1 cut(s) 688
Vha464I CTTAAG 1 cut(s) 298
VpaK11BI GGWCC 1 cut(s) 624
XhoI CTCGAG 1 cut(s) 486
XmaI CCCGGG 1 cut(s) 532
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.