pycom17g07850

Protein of unknown function (DUF789)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr17
OG0012257
Physical Location & Seq
Reverse (-)
5806206 .. 5808599
2394 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom17g07850.2

Sequence Viewer

Length: 972 bp
ATGATTTTAGACAAAGGGTCAATGCAATCAAACCTTGACTGCTTCCTCCATTCTACAACCCCGGTACTCCAACCCCAATTCCTACCCAAGTCTGAGATGAGGAACCTCAACCGGCTATGGCATCCATGGGAGAGAGAAAAGGTTGAGTATTTCACATTGAGTGATCTCTGGAATTGCTATGATGAATGGAGTGCTTATGGCGCCGGAGTTCCAATCGCCATGGACAGCGGCGAGACTCTTGTGCAGTACTATGTGCCTTACCTCTCTGCTATCCAAATTTTTACTAGCAATTCATCTGTGAACCGCTTCAGGGAAGAGCCCGAGTCAGGCGACTGCGAGACGAGGGATTCGTTTAGCGATTCGTGCAGCTTTGAGAGTGAAAATGATAAGCTGTGGAGATGGGATGGATGCTCTTCGGAAGATGGCGGGTTCGAGCAAGACAATCTCTTGCATGTGAATGATAGATTAGGGTACCTATATTTTGAGTATTTTGAGAGATCAACTCCCTATGGAAGAGTTCCTCTCATGGATAAGATCAATACATTAGCGCAACGATACCCAGGCTTGATGTCATTAAGGAGTGTTGATCTCTCACCAGCTAGTTGGATGGCTGTTTCTTGGTACCCAATTTATCACATTCCGATGGGAAGGACTATAAGGGATCTGTCCACATCCTTCCTCACATACCACACCCTTTCATCTTCTTTTCAAGACATGGACCTTGAGGATGATATTGAGAACGATGAGCAACGGAAGCGAAAGAAAGGGGAAGGCATCTCTCTCCCTCCATTTGGTTTGGCCACTTACAAGATGCAAGGGAGTGTGTGGGTCTCAGGCAACTGTGGAAGGGACCAAGAGAGGCTCACGTCTCTATTGAGCGTGGCGGATTCTTGGCTAAAGCAACTTAGGGTCCAGCACCATGACTTCAACTACTTCACAACTATTAGGCGTGGCCAGTGTCAATACCTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF789

Protein Analysis

324

Amino Acids

37.6

Weight (kDa)

4.96

Isoelectric Point (pI)

48.57

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012257)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G03420
fragaria_vesca FvH4_6g45060 FvH4_6g45060
malus_domestica MD09G1090400.v1.1 MD17G1079500.v1.1
prunus_persica Prupe.3G235200_v2.0.a1 Prupe.3G235200_v2.0.a1
pyrus_communis pycom09g01510 pycom17g07850
rosa_chinensis RchiOBHm_Chr2g0162411
rosa_laevigata RLG00000021345
rosa_multiflora Rmu_sc0004020.1_g000002
rosa_roxburghii Rroxscaffold_2G00087950
rosa_rugosa Rorug02G0497800
rosa_samantha Rh2AG563500 Rh2BG576200 Rh2CG546300 Rh2DG586200
rosa_wichuraiana Rw2G046640

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 2 cut(s) 471, 621
AccB1I GGYRCC 3 cut(s) 200, 471, 621
AciI CCGC 4 cut(s) 228, 304, 426, 884
AclWI GGATC 1 cut(s) 669
AcoI YGGCCR 2 cut(s) 798, 952
AcsI RAATTY 1 cut(s) 276
AcuI CTGAAG 1 cut(s) 292
AcyI GRCGYC 1 cut(s) 201
AfaI GTAC 4 cut(s) 66, 248, 473, 623
AfiI CCNNNNNNNGG 3 cut(s) 310, 326, 791
AgsI TTSAA 2 cut(s) 710, 928
AhdI GACNNNNNGTC 1 cut(s) 16
AjiI CACGTC 1 cut(s) 867
AjnI CCWGG 1 cut(s) 559
AluBI AGCT 3 cut(s) 369, 391, 599
AluI AGCT 3 cut(s) 369, 391, 599
Alw26I GTCTC 4 cut(s) 227, 332, 835, 873
AlwI GGATC 1 cut(s) 669
Ama87I CYCGRG 1 cut(s) 320
AoxI GGCC 2 cut(s) 798, 952
ApeKI GCWGC 1 cut(s) 366
ApoI RAATTY 1 cut(s) 276
ArsI GACNNNNNNTTYG 2 cut(s) 331, 363
Asp700I GAANNNNTTC 1 cut(s) 305
Asp718I GGTACC 2 cut(s) 471, 621
AspLEI GCGC 2 cut(s) 203, 550
AspS9I GGNCC 3 cut(s) 718, 850, 910
AsuC2I CCSGG 1 cut(s) 62
AsuHPI GGTGA 1 cut(s) 585
AvaI CYCGRG 1 cut(s) 320
AvaII GGWCC 3 cut(s) 718, 850, 910
BalI TGGCCA 2 cut(s) 800, 954
BanI GGYRCC 3 cut(s) 200, 471, 621
BanII GRGCYC 1 cut(s) 321
BbvI GCAGC 1 cut(s) 378
BccI CCATC 5 cut(s) 393, 398, 416, 601, 637
BciT130I CCWGG 1 cut(s) 561
BcnI CCSGG 1 cut(s) 62
BcoDI GTCTC 4 cut(s) 227, 332, 835, 873
BfaI CTAG 2 cut(s) 285, 600
BfoI RGCGCY 1 cut(s) 204
BisI GCNGC 2 cut(s) 229, 367
BlsI GCNGC 2 cut(s) 230, 368
BmcAI AGTACT 1 cut(s) 248
Bme1390I CCNGG 2 cut(s) 62, 561
Bme18I GGWCC 3 cut(s) 718, 850, 910
BmeRI GACNNNNNGTC 1 cut(s) 16
BmeT110I CYCGRG 1 cut(s) 320
BmgBI CACGTC 1 cut(s) 867
BmgT120I GGNCC 3 cut(s) 718, 850, 910
BmiI GGNNCC 6 cut(s) 104, 202, 473, 623, 851, 911
BmrFI CCNGG 2 cut(s) 62, 561
BmsI GCATC 4 cut(s) 130, 398, 783, 801
BplI GAGNNNNNCTC 4 cut(s) 487, 519, 507, 539
BpuEI CTTGAG 1 cut(s) 743
BpuMI CCSGG 1 cut(s) 62
BsaHI GRCGYC 1 cut(s) 201
BsaI GGTCTC 1 cut(s) 835
BsaJI CCNNGG 4 cut(s) 60, 125, 219, 559
Bsc4I CCNNNNNNNGG 3 cut(s) 310, 326, 791
Bse118I RCCGGY 1 cut(s) 111
Bse1I ACTGG 1 cut(s) 955
BseBI CCWGG 1 cut(s) 561
BseDI CCNNGG 4 cut(s) 60, 125, 219, 559
BseGI GGATG 6 cut(s) 121, 409, 413, 612, 671, 733
BseLI CCNNNNNNNGG 3 cut(s) 310, 326, 791
BseMII CTCAG 2 cut(s) 84, 846
BseNI ACTGG 1 cut(s) 955
BseXI GCAGC 1 cut(s) 378
BsgI GTGCAG 2 cut(s) 263, 385
BshFI GGCC 2 cut(s) 800, 954
BshNI GGYRCC 3 cut(s) 200, 471, 621
BsiHKCI CYCGRG 1 cut(s) 320
BsiSI CCGG 3 cut(s) 62, 112, 204
BslFI GGGAC 1 cut(s) 863
BslI CCNNNNNNNGG 3 cut(s) 310, 326, 791
BsmAI GTCTC 4 cut(s) 227, 332, 835, 873
BsmBI CGTCTC 2 cut(s) 332, 873
BsmFI GGGAC 1 cut(s) 863
BsnI GGCC 2 cut(s) 800, 954
Bso31I GGTCTC 1 cut(s) 835
BsoBI CYCGRG 1 cut(s) 320
Bsp1286I GDGCHC 1 cut(s) 321
Bsp143I GATC 5 cut(s) 163, 497, 534, 586, 661
Bsp19I CCATGG 2 cut(s) 125, 219
BspACI CCGC 4 cut(s) 228, 304, 426, 884
BspANI GGCC 2 cut(s) 800, 954
BspCNI CTCAG 2 cut(s) 85, 845
BspLI GGNNCC 6 cut(s) 104, 202, 473, 623, 851, 911
BspPI GGATC 1 cut(s) 669
BspQI GCTCTTC 2 cut(s) 309, 418
BspT107I GGYRCC 3 cut(s) 200, 471, 621
BspTNI GGTCTC 1 cut(s) 835
BsrFI RCCGGY 1 cut(s) 111
BsrI ACTGG 1 cut(s) 955
BssAI RCCGGY 1 cut(s) 111
BssECI CCNNGG 4 cut(s) 60, 125, 219, 559
BssMI GATC 5 cut(s) 163, 497, 534, 586, 661
BssNI GRCGYC 1 cut(s) 201
BssT1I CCWWGG 2 cut(s) 125, 219
Bst2UI CCWGG 1 cut(s) 561
Bst4CI ACNGT 1 cut(s) 842
Bst6I CTCTTC 3 cut(s) 309, 418, 508
BstACI GRCGYC 1 cut(s) 201
BstDEI CTNAG 3 cut(s) 93, 832, 905
BstDSI CCRYGG 2 cut(s) 125, 219
BstF5I GGATG 6 cut(s) 121, 409, 413, 612, 671, 733
BstH2I RGCGCY 1 cut(s) 204
BstHHI GCGC 2 cut(s) 203, 550
BstKTI GATC 5 cut(s) 166, 500, 537, 589, 664
BstMAI GTCTC 4 cut(s) 227, 332, 835, 873
BstMBI GATC 5 cut(s) 163, 497, 534, 586, 661
BstMWI GCNNNNNNNGC 3 cut(s) 200, 363, 754
BstNI CCWGG 1 cut(s) 561
BstNSI RCATGY 1 cut(s) 455
BstSCI CCNGG 2 cut(s) 60, 559
BstV1I GCAGC 1 cut(s) 378
BstX2I RGATCY 1 cut(s) 661
BstXI CCANNNNNNTGG 1 cut(s) 603
BstYI RGATCY 1 cut(s) 661
BsuRI GGCC 2 cut(s) 800, 954
BtgI CCRYGG 2 cut(s) 125, 219
BtrI CACGTC 1 cut(s) 867
BtsCI GGATG 6 cut(s) 121, 409, 413, 612, 671, 733
BtsIMutI CAGTG 1 cut(s) 962
CfoI GCGC 2 cut(s) 203, 550
Cfr10I RCCGGY 1 cut(s) 111
Cfr13I GGNCC 3 cut(s) 718, 850, 910
Csp6I GTAC 4 cut(s) 65, 247, 472, 622
CviAII CATG 6 cut(s) 126, 220, 452, 526, 715, 920
CviQI GTAC 4 cut(s) 65, 247, 472, 622
DdeI CTNAG 3 cut(s) 93, 832, 905
DinI GGCGCC 1 cut(s) 202
DpnI GATC 5 cut(s) 165, 499, 536, 588, 663
DpnII GATC 5 cut(s) 163, 497, 534, 586, 661
DriI GACNNNNNGTC 1 cut(s) 16
EaeI YGGCCR 2 cut(s) 798, 952
Eam1104I CTCTTC 3 cut(s) 309, 418, 508
Eam1105I GACNNNNNGTC 1 cut(s) 16
EarI CTCTTC 3 cut(s) 309, 418, 508
EciI GGCGGA 1 cut(s) 899
Eco130I CCWWGG 2 cut(s) 125, 219
Eco24I GRGCYC 1 cut(s) 321
Eco31I GGTCTC 1 cut(s) 835
Eco47I GGWCC 3 cut(s) 718, 850, 910
Eco57I CTGAAG 1 cut(s) 292
Eco88I CYCGRG 1 cut(s) 320
EcoRII CCWGG 1 cut(s) 559
EcoT14I CCWWGG 2 cut(s) 125, 219
EcoT38I GRGCYC 1 cut(s) 321
EgeI GGCGCC 1 cut(s) 202
EheI GGCGCC 1 cut(s) 202
ErhI CCWWGG 2 cut(s) 125, 219
Esp3I CGTCTC 2 cut(s) 332, 873
FaeI CATG 6 cut(s) 129, 223, 455, 529, 718, 923
FaqI GGGAC 1 cut(s) 863
FatI CATG 6 cut(s) 125, 219, 451, 525, 714, 919
FauI CCCGC 1 cut(s) 419
Fnu4HI GCNGC 2 cut(s) 229, 367
FokI GGATG 6 cut(s) 108, 416, 420, 619, 658, 740
FriOI GRGCYC 1 cut(s) 321
Fsp4HI GCNGC 2 cut(s) 229, 367
FspBI CTAG 2 cut(s) 285, 600
GlaI GCGC 2 cut(s) 202, 549
GluI GCNGC 2 cut(s) 229, 367
HaeII RGCGCY 1 cut(s) 204
HaeIII GGCC 2 cut(s) 800, 954
HapII CCGG 3 cut(s) 62, 112, 204
HhaI GCGC 2 cut(s) 203, 550
Hin1I GRCGYC 1 cut(s) 201
Hin1II CATG 6 cut(s) 129, 223, 455, 529, 718, 923
Hin6I GCGC 2 cut(s) 201, 548
HinP1I GCGC 2 cut(s) 201, 548
HinfI GANTC 5 cut(s) 235, 323, 347, 359, 887
HpaII CCGG 3 cut(s) 62, 112, 204
HphI GGTGA 1 cut(s) 585
Hpy166II GTNNAC 2 cut(s) 301, 669
Hpy188I TCNGA 3 cut(s) 94, 418, 642
Hpy188III TCNNGA 2 cut(s) 169, 710
Hpy8I GTNNAC 2 cut(s) 301, 669
HpyAV CCTTC 4 cut(s) 642, 685, 764, 840
HpyCH4III ACNGT 1 cut(s) 842
HpyCH4IV ACGT 1 cut(s) 866
HpyCH4V TGCA 5 cut(s) 25, 244, 366, 451, 814
HpyF10VI GCNNNNNNNGC 3 cut(s) 200, 363, 754
HpyF3I CTNAG 3 cut(s) 93, 832, 905
HpySE526I ACGT 1 cut(s) 866
Hsp92I GRCGYC 1 cut(s) 201
Hsp92II CATG 6 cut(s) 129, 223, 455, 529, 718, 923
HspAI GCGC 2 cut(s) 201, 548
KasI GGCGCC 1 cut(s) 200
KpnI GGTACC 2 cut(s) 475, 625
Kzo9I GATC 5 cut(s) 163, 497, 534, 586, 661
LguI GCTCTTC 2 cut(s) 309, 418
Lsp1109I GCAGC 1 cut(s) 378
LweI GCATC 4 cut(s) 130, 398, 783, 801
MaeI CTAG 2 cut(s) 285, 600
MaeII ACGT 1 cut(s) 866
MalI GATC 5 cut(s) 165, 499, 536, 588, 663
MboI GATC 5 cut(s) 163, 497, 534, 586, 661
MboII GAAGA 5 cut(s) 326, 405, 431, 525, 693
MflI RGATCY 1 cut(s) 661
MhlI GDGCHC 1 cut(s) 321
MlsI TGGCCA 2 cut(s) 800, 954
MluCI AATT 5 cut(s) 77, 172, 276, 289, 627
MluNI TGGCCA 2 cut(s) 800, 954
Mly113I GGCGCC 1 cut(s) 201
MlyI GAGTC 2 cut(s) 229, 332
MmeI TCCRAC 2 cut(s) 94, 584
Mox20I TGGCCA 2 cut(s) 800, 954
MroXI GAANNNNTTC 1 cut(s) 305
MscI TGGCCA 2 cut(s) 800, 954
MseI TTAA 2 cut(s) 575, 970
MslI CAYNNNNRTG 2 cut(s) 456, 641
Msp20I TGGCCA 2 cut(s) 800, 954
MspA1I CMGCKG 1 cut(s) 228
MspI CCGG 3 cut(s) 62, 112, 204
MspR9I CCNGG 2 cut(s) 62, 561
MvaI CCWGG 1 cut(s) 561
MwoI GCNNNNNNNGC 3 cut(s) 200, 363, 754
NarI GGCGCC 1 cut(s) 201
NciI CCSGG 1 cut(s) 62
NcoI CCATGG 2 cut(s) 125, 219
NdeII GATC 5 cut(s) 163, 497, 534, 586, 661
NlaIII CATG 6 cut(s) 129, 223, 455, 529, 718, 923
NlaIV GGNNCC 6 cut(s) 104, 202, 473, 623, 851, 911
NspI RCATGY 1 cut(s) 455
PciSI GCTCTTC 2 cut(s) 309, 418
PcsI WCGNNNNNNNCGW 1 cut(s) 347
PdmI GAANNNNTTC 1 cut(s) 305
PfeI GAWTC 3 cut(s) 347, 359, 887
PkrI GCNGC 2 cut(s) 230, 368
PleI GAGTC 2 cut(s) 229, 331
PluTI GGCGCC 1 cut(s) 204
PpsI GAGTC 2 cut(s) 229, 331
Psp6I CCWGG 1 cut(s) 559
PspGI CCWGG 1 cut(s) 559
PspN4I GGNNCC 6 cut(s) 104, 202, 473, 623, 851, 911
PspPI GGNCC 3 cut(s) 718, 850, 910
PsuI RGATCY 1 cut(s) 661
RsaI GTAC 4 cut(s) 66, 248, 473, 623
RsaNI GTAC 4 cut(s) 65, 247, 472, 622
RseI CAYNNNNRTG 2 cut(s) 456, 641
SapI GCTCTTC 2 cut(s) 309, 418
SaqAI TTAA 2 cut(s) 575, 970
SatI GCNGC 2 cut(s) 229, 367
Sau3AI GATC 5 cut(s) 163, 497, 534, 586, 661
Sau96I GGNCC 3 cut(s) 718, 850, 910
ScaI AGTACT 1 cut(s) 248
SchI GAGTC 2 cut(s) 229, 332
ScrFI CCNGG 2 cut(s) 62, 561
SduI GDGCHC 1 cut(s) 321
SfaNI GCATC 4 cut(s) 130, 398, 783, 801
SfoI GGCGCC 1 cut(s) 202
SinI GGWCC 3 cut(s) 718, 850, 910
SmiMI CAYNNNNRTG 2 cut(s) 456, 641
SmlI CTYRAG 1 cut(s) 722
SmoI CTYRAG 1 cut(s) 722
Sse9I AATT 5 cut(s) 77, 172, 276, 289, 627
SsiI CCGC 4 cut(s) 228, 304, 426, 884
SspDI GGCGCC 1 cut(s) 200
SspMI CTAG 2 cut(s) 285, 600
StyD4I CCNGG 2 cut(s) 60, 559
StyI CCWWGG 2 cut(s) 125, 219
TaaI ACNGT 1 cut(s) 842
TaiI ACGT 1 cut(s) 869
TaqI TCGA 1 cut(s) 432
TasI AATT 5 cut(s) 77, 172, 276, 289, 627
TatI WGTACW 1 cut(s) 246
TauI GCSGC 1 cut(s) 231
TfiI GAWTC 3 cut(s) 347, 359, 887
Tru1I TTAA 2 cut(s) 575, 970
Tru9I TTAA 2 cut(s) 575, 970
TscAI CASTG 1 cut(s) 962
TseI GCWGC 1 cut(s) 366
TspDTI ATGAA 3 cut(s) 198, 282, 687
TspGWI ACGGA 1 cut(s) 766
TspRI CASTG 1 cut(s) 962
VpaK11BI GGWCC 3 cut(s) 718, 850, 910
XapI RAATTY 1 cut(s) 276
XceI RCATGY 1 cut(s) 455
XmnI GAANNNNTTC 1 cut(s) 305
XspI CTAG 2 cut(s) 285, 600
ZrmI AGTACT 1 cut(s) 248
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.