FvH4_6g45060

Protein of unknown function (DUF789)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0012257
Physical Location & Seq
Forward (+)
34607797 .. 34611417
3621 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g45060.t2

Sequence Viewer

Length: 978 bp
ATGATTTTGGACAAAGGCTCAATGCAATCAAACCTTGAATGCTTCCTACATGGTACAACCCCTGTGCTCCAACCCCAATTCTTGCCCAAGTCTGAGATTAGGAACCTTAATCGTCTATGGCACCCGTGGGAGAGGGAAAACGTTGAGTATTTCACATTGAGTGATTTGTGGAATTGTTTTGATGAATGGAGTGCTTATGGTGCCGGAGTTCCGATCACCTTGGATAGCGGTGAGACCCTTGTGCAGTATTATGTCCCTTATCTCTCTGCTATCCAAATCTTCACCAGCAATTCGTCTGTAAATAGCTTCAGGGAAGAAACCGAGTCAGGTGATTGTGAGACGAGGGATTCGTTTAGTGATTCATGCAGTTTCGAAAGTGAAAGTGATAAGTTATGGAGATGGGATGGATGCTCATCAGAGGAAGGTGGATTTGAGCAAGACAATAATCTGTGGCACCTGAATGATAGATTAGGCTATCTTTATTTTGAGTATTTTGAGAGATCAACTCCGTATGGAAGAGTTCCTCTCATGGATAAGATTAATGGATTAGCTCAAAGATACCCCGGCTTGATGTCATTGAGGAGTGTTGATCTTTCACCTGCTAGTTGGATGTCTGTTGCTTGGTACCCAATTTATCATATTCCAATGGGAAGAACTATAAAGGACCTCTCCACATCCTTCCTCACGTACCACACACTTTCATCTTCTTTTCAAGACATGGACCTCGAGGATGATATGGAGAGTGACGAGCAACGGAAGAGAAAGAAGGGAGATGGCATTTCTCTGCCTTCATTTGGGTTGGCCACTTACAAGATGCAAGGGAATTTGTGGGTTTCGGGCAATTGCGGCCGGGACCAAGAGAGGCTAATGTCACTGTTGAGCGTGGCGGATTCATGGTTAAAGCAGCTAAGGGTCCAGCACCATGACTTCAACTACTTCACCTCAATTAGGCGCGGTGGCCAGTGCCACTACCTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF789

Protein Analysis

326

Amino Acids

37.68

Weight (kDa)

4.9

Isoelectric Point (pI)

56.18

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF789 PF05623 10 - 320 2.7e-111 Protein of unknown function (DUF789)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012257)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G03420
fragaria_vesca FvH4_6g45060 FvH4_6g45060
malus_domestica MD09G1090400.v1.1 MD17G1079500.v1.1
prunus_persica Prupe.3G235200_v2.0.a1 Prupe.3G235200_v2.0.a1
pyrus_communis pycom09g01510 pycom17g07850
rosa_chinensis RchiOBHm_Chr2g0162411
rosa_laevigata RLG00000021345
rosa_multiflora Rmu_sc0004020.1_g000002
rosa_roxburghii Rroxscaffold_2G00087950
rosa_rugosa Rorug02G0497800
rosa_samantha Rh2AG563500 Rh2BG576200 Rh2CG546300 Rh2DG586200
rosa_wichuraiana Rw2G046640

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 607
AbsI CCTCGAGG 1 cut(s) 725
Acc36I ACCTGC 1 cut(s) 607
Acc65I GGTACC 1 cut(s) 624
AccB1I GGYRCC 4 cut(s) 120, 200, 453, 624
AccII CGCG 1 cut(s) 954
AciI CCGC 4 cut(s) 228, 846, 887, 954
AclI AACGTT 1 cut(s) 141
AcoI YGGCCR 3 cut(s) 801, 847, 958
AcsI RAATTY 1 cut(s) 823
AcuI CTGAAG 1 cut(s) 292
AfaI GTAC 3 cut(s) 55, 626, 689
AfiI CCNNNNNNNGG 2 cut(s) 794, 948
AgsI TTSAA 3 cut(s) 38, 713, 931
AluBI AGCT 3 cut(s) 306, 551, 907
AluI AGCT 3 cut(s) 306, 551, 907
Alw21I GWGCWC 1 cut(s) 69
Alw26I GTCTC 2 cut(s) 227, 332
Ama87I CYCGRG 1 cut(s) 725
AoxI GGCC 3 cut(s) 801, 847, 958
ApeKI GCWGC 1 cut(s) 904
ApoI RAATTY 1 cut(s) 823
ArsI GACNNNNNNTTYG 2 cut(s) 331, 363
AseI ATTAAT 1 cut(s) 540
Asp718I GGTACC 1 cut(s) 624
AspLEI GCGC 1 cut(s) 954
AspS9I GGNCC 4 cut(s) 664, 721, 853, 913
AsuC2I CCSGG 2 cut(s) 564, 851
AsuHPI GGTGA 6 cut(s) 208, 242, 274, 341, 588, 931
AsuII TTCGAA 1 cut(s) 372
AvaI CYCGRG 1 cut(s) 725
AvaII GGWCC 4 cut(s) 664, 721, 853, 913
BalI TGGCCA 2 cut(s) 803, 960
BanI GGYRCC 4 cut(s) 120, 200, 453, 624
Bbv12I GWGCWC 1 cut(s) 69
BbvI GCAGC 1 cut(s) 916
BccI CCATC 3 cut(s) 393, 398, 767
BcnI CCSGG 2 cut(s) 564, 851
BcoDI GTCTC 2 cut(s) 227, 332
BfaI CTAG 1 cut(s) 603
BfuAI ACCTGC 1 cut(s) 607
BisI GCNGC 2 cut(s) 847, 905
BlsI GCNGC 2 cut(s) 848, 906
Bme1390I CCNGG 2 cut(s) 564, 851
Bme18I GGWCC 4 cut(s) 664, 721, 853, 913
BmeT110I CYCGRG 1 cut(s) 725
BmgT120I GGNCC 4 cut(s) 664, 721, 853, 913
BmiI GGNNCC 7 cut(s) 104, 122, 202, 455, 626, 854, 914
BmrFI CCNGG 2 cut(s) 564, 851
BmsI GCATC 2 cut(s) 398, 804
BplI GAGNNNNNCTC 4 cut(s) 490, 522, 510, 542
Bpu10I CCTNAGC 1 cut(s) 908
Bpu14I TTCGAA 1 cut(s) 372
BpuMI CCSGG 2 cut(s) 564, 851
BsaAI YACGTR 1 cut(s) 687
BsaBI GATNNNNATC 1 cut(s) 412
BsaI GGTCTC 1 cut(s) 227
BsaJI CCNNGG 3 cut(s) 125, 219, 562
Bsc4I CCNNNNNNNGG 2 cut(s) 794, 948
Bse1I ACTGG 1 cut(s) 961
Bse8I GATNNNNATC 1 cut(s) 412
BseDI CCNNGG 3 cut(s) 125, 219, 562
BseGI GGATG 5 cut(s) 409, 413, 615, 674, 736
BseJI GATNNNNATC 1 cut(s) 412
BseLI CCNNNNNNNGG 2 cut(s) 794, 948
BseMII CTCAG 1 cut(s) 84
BseNI ACTGG 1 cut(s) 961
BseRI GAGGAG 1 cut(s) 595
BseX3I CGGCCG 1 cut(s) 847
BseXI GCAGC 1 cut(s) 916
BsgI GTGCAG 1 cut(s) 263
Bsh1236I CGCG 1 cut(s) 954
Bsh1285I CGRYCG 1 cut(s) 850
BshFI GGCC 3 cut(s) 803, 849, 960
BshNI GGYRCC 4 cut(s) 120, 200, 453, 624
BsiEI CGRYCG 1 cut(s) 850
BsiHKAI GWGCWC 1 cut(s) 69
BsiHKCI CYCGRG 1 cut(s) 725
BsiSI CCGG 3 cut(s) 204, 564, 850
BslFI GGGAC 2 cut(s) 239, 866
BslI CCNNNNNNNGG 2 cut(s) 794, 948
BsmAI GTCTC 2 cut(s) 227, 332
BsmBI CGTCTC 1 cut(s) 332
BsmFI GGGAC 2 cut(s) 239, 866
BsmI GAATGC 1 cut(s) 44
BsnI GGCC 3 cut(s) 803, 849, 960
Bso31I GGTCTC 1 cut(s) 227
BsoBI CYCGRG 1 cut(s) 725
Bsp119I TTCGAA 1 cut(s) 372
Bsp1286I GDGCHC 1 cut(s) 69
Bsp143I GATC 3 cut(s) 213, 500, 589
BspACI CCGC 4 cut(s) 228, 846, 887, 954
BspANI GGCC 3 cut(s) 803, 849, 960
BspCNI CTCAG 1 cut(s) 85
BspFNI CGCG 1 cut(s) 954
BspLI GGNNCC 7 cut(s) 104, 122, 202, 455, 626, 854, 914
BspMI ACCTGC 1 cut(s) 607
BspT104I TTCGAA 1 cut(s) 372
BspT107I GGYRCC 4 cut(s) 120, 200, 453, 624
BspTNI GGTCTC 1 cut(s) 227
BsrI ACTGG 1 cut(s) 961
BssECI CCNNGG 3 cut(s) 125, 219, 562
BssMI GATC 3 cut(s) 213, 500, 589
BssT1I CCWWGG 1 cut(s) 219
Bst4CI ACNGT 1 cut(s) 876
Bst6I CTCTTC 2 cut(s) 511, 752
BstBAI YACGTR 1 cut(s) 687
BstBI TTCGAA 1 cut(s) 372
BstDEI CTNAG 2 cut(s) 93, 908
BstDSI CCRYGG 1 cut(s) 125
BstENI CCTNNNNNAGG 1 cut(s) 946
BstF5I GGATG 5 cut(s) 409, 413, 615, 674, 736
BstFNI CGCG 1 cut(s) 954
BstHHI GCGC 1 cut(s) 954
BstKTI GATC 3 cut(s) 216, 503, 592
BstMAI GTCTC 2 cut(s) 227, 332
BstMBI GATC 3 cut(s) 213, 500, 589
BstMCI CGRYCG 1 cut(s) 850
BstMWI GCNNNNNNNGC 2 cut(s) 200, 846
BstSCI CCNGG 2 cut(s) 562, 849
BstUI CGCG 1 cut(s) 954
BstV1I GCAGC 1 cut(s) 916
BstZI CGGCCG 1 cut(s) 847
BsuRI GGCC 3 cut(s) 803, 849, 960
BtgI CCRYGG 1 cut(s) 125
BtsCI GGATG 5 cut(s) 409, 413, 615, 674, 736
BtsIMutI CAGTG 2 cut(s) 872, 968
BveI ACCTGC 1 cut(s) 607
CfoI GCGC 1 cut(s) 954
Cfr13I GGNCC 4 cut(s) 664, 721, 853, 913
Csp6I GTAC 3 cut(s) 54, 625, 688
CspCI CAANNNNNGTGG 1 cut(s) 956
CviAII CATG 6 cut(s) 50, 363, 529, 718, 894, 923
CviQI GTAC 3 cut(s) 54, 625, 688
DdeI CTNAG 2 cut(s) 93, 908
DpnI GATC 3 cut(s) 215, 502, 591
DpnII GATC 3 cut(s) 213, 500, 589
EaeI YGGCCR 3 cut(s) 801, 847, 958
EagI CGGCCG 1 cut(s) 847
Eam1104I CTCTTC 2 cut(s) 511, 752
EarI CTCTTC 2 cut(s) 511, 752
EciI GGCGGA 1 cut(s) 902
EclXI CGGCCG 1 cut(s) 847
Eco130I CCWWGG 1 cut(s) 219
Eco31I GGTCTC 1 cut(s) 227
Eco47I GGWCC 4 cut(s) 664, 721, 853, 913
Eco52I CGGCCG 1 cut(s) 847
Eco57I CTGAAG 1 cut(s) 292
Eco88I CYCGRG 1 cut(s) 725
EcoNI CCTNNNNNAGG 1 cut(s) 946
EcoO109I RGGNCCY 1 cut(s) 664
EcoT14I CCWWGG 1 cut(s) 219
ErhI CCWWGG 1 cut(s) 219
Esp3I CGTCTC 1 cut(s) 332
FaeI CATG 6 cut(s) 53, 366, 532, 721, 897, 926
FaqI GGGAC 2 cut(s) 239, 866
FatI CATG 6 cut(s) 49, 362, 528, 717, 893, 922
Fnu4HI GCNGC 2 cut(s) 847, 905
FokI GGATG 5 cut(s) 416, 420, 622, 661, 743
Fsp4HI GCNGC 2 cut(s) 847, 905
FspBI CTAG 1 cut(s) 603
GlaI GCGC 1 cut(s) 953
GluI GCNGC 2 cut(s) 847, 905
HaeIII GGCC 3 cut(s) 803, 849, 960
HapII CCGG 3 cut(s) 204, 564, 850
HhaI GCGC 1 cut(s) 954
Hin1II CATG 6 cut(s) 53, 366, 532, 721, 897, 926
Hin6I GCGC 1 cut(s) 952
HinP1I GCGC 1 cut(s) 952
HinfI GANTC 4 cut(s) 323, 347, 359, 890
HpaII CCGG 3 cut(s) 204, 564, 850
HphI GGTGA 6 cut(s) 208, 242, 274, 341, 588, 931
Hpy188I TCNGA 3 cut(s) 94, 213, 418
Hpy188III TCNNGA 1 cut(s) 713
HpyAV CCTTC 4 cut(s) 416, 688, 760, 798
HpyCH4III ACNGT 1 cut(s) 876
HpyCH4IV ACGT 2 cut(s) 141, 686
HpyCH4V TGCA 4 cut(s) 25, 244, 366, 817
HpyF10VI GCNNNNNNNGC 2 cut(s) 200, 846
HpyF3I CTNAG 2 cut(s) 93, 908
HpySE526I ACGT 2 cut(s) 141, 686
Hsp92II CATG 6 cut(s) 53, 366, 532, 721, 897, 926
HspAI GCGC 1 cut(s) 952
KpnI GGTACC 1 cut(s) 628
Kzo9I GATC 3 cut(s) 213, 500, 589
LmnI GCTCC 1 cut(s) 72
Lsp1109I GCAGC 1 cut(s) 916
LweI GCATC 2 cut(s) 398, 804
MaeI CTAG 1 cut(s) 603
MaeII ACGT 2 cut(s) 141, 686
MaeIII GTNAC 2 cut(s) 743, 870
MalI GATC 3 cut(s) 215, 502, 591
MboI GATC 3 cut(s) 213, 500, 589
MboII GAAGA 6 cut(s) 271, 326, 528, 663, 696, 769
MfeI CAATTG 1 cut(s) 841
MhlI GDGCHC 1 cut(s) 69
MlsI TGGCCA 2 cut(s) 803, 960
MluCI AATT 7 cut(s) 77, 172, 289, 630, 823, 841, 945
MluNI TGGCCA 2 cut(s) 803, 960
MlyI GAGTC 1 cut(s) 332
MmeI TCCRAC 2 cut(s) 94, 587
Mox20I TGGCCA 2 cut(s) 803, 960
MscI TGGCCA 2 cut(s) 803, 960
MseI TTAA 3 cut(s) 108, 540, 899
MslI CAYNNNNRTG 1 cut(s) 459
Msp20I TGGCCA 2 cut(s) 803, 960
MspI CCGG 3 cut(s) 204, 564, 850
MspR9I CCNGG 2 cut(s) 564, 851
MunI CAATTG 1 cut(s) 841
Mva1269I GAATGC 1 cut(s) 44
MvnI CGCG 1 cut(s) 954
MwoI GCNNNNNNNGC 2 cut(s) 200, 846
NciI CCSGG 2 cut(s) 564, 851
NdeII GATC 3 cut(s) 213, 500, 589
NlaIII CATG 6 cut(s) 53, 366, 532, 721, 897, 926
NlaIV GGNNCC 7 cut(s) 104, 122, 202, 455, 626, 854, 914
NmuCI GTSAC 2 cut(s) 743, 870
NspV TTCGAA 1 cut(s) 372
PaeR7I CTCGAG 1 cut(s) 725
PaqCI CACCTGC 1 cut(s) 607
PcsI WCGNNNNNNNCGW 1 cut(s) 347
PctI GAATGC 1 cut(s) 44
PfeI GAWTC 3 cut(s) 347, 359, 890
PkrI GCNGC 2 cut(s) 848, 906
PleI GAGTC 1 cut(s) 331
PpsI GAGTC 1 cut(s) 331
Ppu21I YACGTR 1 cut(s) 687
PpuMI RGGWCCY 1 cut(s) 664
PshBI ATTAAT 1 cut(s) 540
Psp1406I AACGTT 1 cut(s) 141
Psp5II RGGWCCY 1 cut(s) 664
PspN4I GGNNCC 7 cut(s) 104, 122, 202, 455, 626, 854, 914
PspPI GGNCC 4 cut(s) 664, 721, 853, 913
PspPPI RGGWCCY 1 cut(s) 664
PspXI VCTCGAGB 1 cut(s) 725
RsaI GTAC 3 cut(s) 55, 626, 689
RsaNI GTAC 3 cut(s) 54, 625, 688
RseI CAYNNNNRTG 1 cut(s) 459
SaqAI TTAA 3 cut(s) 108, 540, 899
SatI GCNGC 2 cut(s) 847, 905
Sau3AI GATC 3 cut(s) 213, 500, 589
Sau96I GGNCC 4 cut(s) 664, 721, 853, 913
SchI GAGTC 1 cut(s) 332
ScrFI CCNGG 2 cut(s) 564, 851
SduI GDGCHC 1 cut(s) 69
SfaNI GCATC 2 cut(s) 398, 804
Sfr274I CTCGAG 1 cut(s) 725
SfuI TTCGAA 1 cut(s) 372
SinI GGWCC 4 cut(s) 664, 721, 853, 913
SlaI CTCGAG 1 cut(s) 725
SmiMI CAYNNNNRTG 1 cut(s) 459
SmlI CTYRAG 1 cut(s) 725
SmoI CTYRAG 1 cut(s) 725
Sse9I AATT 7 cut(s) 77, 172, 289, 630, 823, 841, 945
SsiI CCGC 4 cut(s) 228, 846, 887, 954
SspMI CTAG 1 cut(s) 603
StyD4I CCNGG 2 cut(s) 562, 849
StyI CCWWGG 1 cut(s) 219
TaaI ACNGT 1 cut(s) 876
TaiI ACGT 2 cut(s) 144, 689
TaqI TCGA 2 cut(s) 372, 726
TasI AATT 7 cut(s) 77, 172, 289, 630, 823, 841, 945
TauI GCSGC 1 cut(s) 849
TfiI GAWTC 3 cut(s) 347, 359, 890
Tru1I TTAA 3 cut(s) 108, 540, 899
Tru9I TTAA 3 cut(s) 108, 540, 899
TscAI CASTG 2 cut(s) 879, 968
TseFI GTSAC 2 cut(s) 743, 870
TseI GCWGC 1 cut(s) 904
Tsp45I GTSAC 2 cut(s) 743, 870
TspDTI ATGAA 5 cut(s) 198, 351, 690, 780, 882
TspGWI ACGGA 2 cut(s) 498, 769
TspRI CASTG 2 cut(s) 879, 968
VpaK11BI GGWCC 4 cut(s) 664, 721, 853, 913
VspI ATTAAT 1 cut(s) 540
XagI CCTNNNNNAGG 1 cut(s) 946
XapI RAATTY 1 cut(s) 823
XhoI CTCGAG 1 cut(s) 725
XspI CTAG 1 cut(s) 603
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.