Rh2AG563500

Protein of unknown function (DUF789)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0012257
Physical Location & Seq
Forward (+)
79296009 .. 79299791
3783 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG563500.1

Sequence Viewer

Length: 978 bp
ATGATTTTGGACAAAGGGTCAATGCAGTCAAACCTTGAATGCTTCCTCCATGGTACAACCCCAGTGCTCCAACCGCAATTCTTGCCCAAGTCTGAGATTAGGAACCTTAATCGGCTATGGCACCCGTGGGAGAGAGAAAAGGTTGAGTATTTCACATTGAGTGATCTGTGGAATTGTTTTGATGAATGGAGTGCTTATGGTGCCGGAGTTCCGATCACCTTGGACAGCGGTGAGACCCTTGTGCAGTACTATGTGCCTTACCTCTCTGCTATCCAAATCTTCACCAGCAATTCATCTGTAAATAGCTTCAGGGAAGAAACCGAGTCAGGTGATTGTGAGACGAGGGATTCGTTTAGTGATTCATGCAGTTTCGAGAGTGAAAGTGATAAGTTATGGAGATGGGATGGATGCTCCTCAGAGGAAGGTGGATTTGAGCAAGACAATAATCTGTGGCATCTGAATGATAGATTAGGCCATCTATATTTTGATTATTTTGAGAGATCAACTCCGTATGGAAGAGTTCCTCTCATGGATAAGATTAATGGATTAGCTCAAAGATACCCTGGCTTGATGTCATTGAGGAGTGTTGATCTTTCACCGGCTAGTTGGATGTCTGTTGCTTGGTACCCAATTTATCATATTCCAATGGGAAGAACTATAAAGGACCTCTCCACATCCTTCCTCACTTACCACACGCTTTCATCTTCTTTTCAAGACATGGACCTTGAGGATGATATGGAGAGTGACGAGCAACAGAAGAGAAAGAAAGGAGAAGGCATCTCACTGCCTCCATTTGGGTTGGCCACTTACAAGATGCAAGGGAATTTGTGGGTCTCGGGCAACTGCGGCCGGGACCAAGAGAGGCTCATGTCGCTGTTGAGCGTGGCGGATTCATGGCTAAAGCAGCTAAGGGTCCAGCACCATGACTTCAACTACTTCACCTCAATTAGGCGTGGTGGCCAGTGCCACTACCTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF789

Protein Analysis

325

Amino Acids

37.65

Weight (kDa)

4.96

Isoelectric Point (pI)

57.51

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF789 PF05623 10 - 313 5.7e-113 Protein of unknown function (DUF789)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012257)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G03420
fragaria_vesca FvH4_6g45060 FvH4_6g45060
malus_domestica MD09G1090400.v1.1 MD17G1079500.v1.1
prunus_persica Prupe.3G235200_v2.0.a1 Prupe.3G235200_v2.0.a1
pyrus_communis pycom09g01510 pycom17g07850
rosa_chinensis RchiOBHm_Chr2g0162411
rosa_laevigata RLG00000021345
rosa_multiflora Rmu_sc0004020.1_g000002
rosa_roxburghii Rroxscaffold_2G00087950
rosa_rugosa Rorug02G0497800
rosa_samantha Rh2AG563500 Rh2BG576200 Rh2CG546300 Rh2DG586200
rosa_wichuraiana Rw2G046640

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 624
AccB1I GGYRCC 3 cut(s) 120, 200, 624
AciI CCGC 4 cut(s) 74, 228, 846, 887
AcoI YGGCCR 3 cut(s) 801, 847, 958
AcsI RAATTY 1 cut(s) 823
AcuI CTGAAG 1 cut(s) 292
AfaI GTAC 3 cut(s) 55, 248, 626
AfiI CCNNNNNNNGG 2 cut(s) 794, 948
AgsI TTSAA 3 cut(s) 38, 713, 931
AhdI GACNNNNNGTC 1 cut(s) 16
AjnI CCWGG 1 cut(s) 562
AluBI AGCT 3 cut(s) 306, 551, 907
AluI AGCT 3 cut(s) 306, 551, 907
Alw21I GWGCWC 1 cut(s) 69
Alw26I GTCTC 3 cut(s) 227, 332, 838
Ama87I CYCGRG 1 cut(s) 835
AoxI GGCC 4 cut(s) 472, 801, 847, 958
ApeKI GCWGC 1 cut(s) 904
ApoI RAATTY 1 cut(s) 823
ArsI GACNNNNNNTTYG 2 cut(s) 331, 363
AseI ATTAAT 1 cut(s) 540
Asp718I GGTACC 1 cut(s) 624
AspS9I GGNCC 4 cut(s) 664, 721, 853, 913
AsuC2I CCSGG 1 cut(s) 851
AsuHPI GGTGA 6 cut(s) 208, 242, 274, 341, 588, 931
AvaI CYCGRG 1 cut(s) 835
AvaII GGWCC 4 cut(s) 664, 721, 853, 913
BalI TGGCCA 2 cut(s) 803, 960
BanI GGYRCC 3 cut(s) 120, 200, 624
Bbv12I GWGCWC 1 cut(s) 69
BbvI GCAGC 1 cut(s) 916
BccI CCATC 3 cut(s) 393, 398, 483
BciT130I CCWGG 1 cut(s) 564
BcnI CCSGG 1 cut(s) 851
BcoDI GTCTC 3 cut(s) 227, 332, 838
BfaI CTAG 1 cut(s) 603
BisI GCNGC 2 cut(s) 847, 905
BlsI GCNGC 2 cut(s) 848, 906
BmcAI AGTACT 1 cut(s) 248
Bme1390I CCNGG 2 cut(s) 564, 851
Bme18I GGWCC 4 cut(s) 664, 721, 853, 913
BmeRI GACNNNNNGTC 1 cut(s) 16
BmeT110I CYCGRG 1 cut(s) 835
BmgT120I GGNCC 4 cut(s) 664, 721, 853, 913
BmiI GGNNCC 6 cut(s) 104, 122, 202, 626, 854, 914
BmrFI CCNGG 2 cut(s) 564, 851
BmrI ACTGGG 1 cut(s) 56
BmsI GCATC 4 cut(s) 398, 463, 786, 804
BmuI ACTGGG 1 cut(s) 56
BplI GAGNNNNNCTC 4 cut(s) 490, 522, 510, 542
Bpu10I CCTNAGC 1 cut(s) 908
BpuEI CTTGAG 1 cut(s) 746
BpuMI CCSGG 1 cut(s) 851
BsaI GGTCTC 2 cut(s) 227, 838
BsaJI CCNNGG 4 cut(s) 49, 125, 219, 562
Bsc4I CCNNNNNNNGG 2 cut(s) 794, 948
Bse118I RCCGGY 1 cut(s) 598
Bse1I ACTGG 2 cut(s) 62, 961
BseBI CCWGG 1 cut(s) 564
BseDI CCNNGG 4 cut(s) 49, 125, 219, 562
BseGI GGATG 5 cut(s) 409, 413, 615, 674, 736
BseLI CCNNNNNNNGG 2 cut(s) 794, 948
BseMII CTCAG 2 cut(s) 84, 429
BseNI ACTGG 2 cut(s) 62, 961
BseRI GAGGAG 2 cut(s) 403, 595
BseX3I CGGCCG 1 cut(s) 847
BseXI GCAGC 1 cut(s) 916
BsgI GTGCAG 1 cut(s) 263
Bsh1285I CGRYCG 1 cut(s) 850
BshFI GGCC 4 cut(s) 474, 803, 849, 960
BshNI GGYRCC 3 cut(s) 120, 200, 624
BsiEI CGRYCG 1 cut(s) 850
BsiHKAI GWGCWC 1 cut(s) 69
BsiHKCI CYCGRG 1 cut(s) 835
BsiSI CCGG 3 cut(s) 204, 599, 850
BslFI GGGAC 1 cut(s) 866
BslI CCNNNNNNNGG 2 cut(s) 794, 948
BsmAI GTCTC 3 cut(s) 227, 332, 838
BsmBI CGTCTC 1 cut(s) 332
BsmFI GGGAC 1 cut(s) 866
BsmI GAATGC 1 cut(s) 44
BsnI GGCC 4 cut(s) 474, 803, 849, 960
Bso31I GGTCTC 2 cut(s) 227, 838
BsoBI CYCGRG 1 cut(s) 835
Bsp1286I GDGCHC 1 cut(s) 69
Bsp143I GATC 4 cut(s) 163, 213, 500, 589
Bsp19I CCATGG 1 cut(s) 49
BspACI CCGC 4 cut(s) 74, 228, 846, 887
BspANI GGCC 4 cut(s) 474, 803, 849, 960
BspCNI CTCAG 2 cut(s) 85, 428
BspLI GGNNCC 6 cut(s) 104, 122, 202, 626, 854, 914
BspT107I GGYRCC 3 cut(s) 120, 200, 624
BspTNI GGTCTC 2 cut(s) 227, 838
BsrFI RCCGGY 1 cut(s) 598
BsrI ACTGG 2 cut(s) 62, 961
BssAI RCCGGY 1 cut(s) 598
BssECI CCNNGG 4 cut(s) 49, 125, 219, 562
BssMI GATC 4 cut(s) 163, 213, 500, 589
BssT1I CCWWGG 2 cut(s) 49, 219
Bst2UI CCWGG 1 cut(s) 564
Bst6I CTCTTC 2 cut(s) 511, 752
BstAPI GCANNNNNTGC 1 cut(s) 82
BstDEI CTNAG 3 cut(s) 93, 415, 908
BstDSI CCRYGG 2 cut(s) 49, 125
BstENI CCTNNNNNAGG 1 cut(s) 946
BstF5I GGATG 5 cut(s) 409, 413, 615, 674, 736
BstKTI GATC 4 cut(s) 166, 216, 503, 592
BstMAI GTCTC 3 cut(s) 227, 332, 838
BstMBI GATC 4 cut(s) 163, 213, 500, 589
BstMCI CGRYCG 1 cut(s) 850
BstMWI GCNNNNNNNGC 6 cut(s) 73, 82, 200, 846, 871, 904
BstNI CCWGG 1 cut(s) 564
BstSCI CCNGG 2 cut(s) 562, 849
BstV1I GCAGC 1 cut(s) 916
BstZI CGGCCG 1 cut(s) 847
BsuRI GGCC 4 cut(s) 474, 803, 849, 960
BtgI CCRYGG 2 cut(s) 49, 125
BtsCI GGATG 5 cut(s) 409, 413, 615, 674, 736
BtsI GCAGTG 1 cut(s) 782
BtsIMutI CAGTG 3 cut(s) 69, 782, 968
Cfr10I RCCGGY 1 cut(s) 598
Cfr13I GGNCC 4 cut(s) 664, 721, 853, 913
Csp6I GTAC 3 cut(s) 54, 247, 625
CviAII CATG 7 cut(s) 50, 363, 529, 718, 868, 894, 923
CviQI GTAC 3 cut(s) 54, 247, 625
DdeI CTNAG 3 cut(s) 93, 415, 908
DpnI GATC 4 cut(s) 165, 215, 502, 591
DpnII GATC 4 cut(s) 163, 213, 500, 589
DriI GACNNNNNGTC 1 cut(s) 16
EaeI YGGCCR 3 cut(s) 801, 847, 958
EagI CGGCCG 1 cut(s) 847
Eam1104I CTCTTC 2 cut(s) 511, 752
Eam1105I GACNNNNNGTC 1 cut(s) 16
EarI CTCTTC 2 cut(s) 511, 752
EciI GGCGGA 1 cut(s) 902
EclXI CGGCCG 1 cut(s) 847
Eco130I CCWWGG 2 cut(s) 49, 219
Eco31I GGTCTC 2 cut(s) 227, 838
Eco47I GGWCC 4 cut(s) 664, 721, 853, 913
Eco52I CGGCCG 1 cut(s) 847
Eco57I CTGAAG 1 cut(s) 292
Eco88I CYCGRG 1 cut(s) 835
EcoNI CCTNNNNNAGG 1 cut(s) 946
EcoO109I RGGNCCY 1 cut(s) 664
EcoRII CCWGG 1 cut(s) 562
EcoT14I CCWWGG 2 cut(s) 49, 219
ErhI CCWWGG 2 cut(s) 49, 219
Esp3I CGTCTC 1 cut(s) 332
FaeI CATG 7 cut(s) 53, 366, 532, 721, 871, 897, 926
FaqI GGGAC 1 cut(s) 866
FatI CATG 7 cut(s) 49, 362, 528, 717, 867, 893, 922
Fnu4HI GCNGC 2 cut(s) 847, 905
FokI GGATG 5 cut(s) 416, 420, 622, 661, 743
Fsp4HI GCNGC 2 cut(s) 847, 905
FspBI CTAG 1 cut(s) 603
GluI GCNGC 2 cut(s) 847, 905
HaeIII GGCC 4 cut(s) 474, 803, 849, 960
HapII CCGG 3 cut(s) 204, 599, 850
Hin1II CATG 7 cut(s) 53, 366, 532, 721, 871, 897, 926
HinfI GANTC 4 cut(s) 323, 347, 359, 890
HpaII CCGG 3 cut(s) 204, 599, 850
HphI GGTGA 6 cut(s) 208, 242, 274, 341, 588, 931
Hpy188I TCNGA 5 cut(s) 94, 213, 418, 459, 977
Hpy188III TCNNGA 2 cut(s) 373, 713
HpyAV CCTTC 3 cut(s) 416, 688, 767
HpyCH4V TGCA 4 cut(s) 25, 244, 366, 817
HpyF10VI GCNNNNNNNGC 6 cut(s) 73, 82, 200, 846, 871, 904
HpyF3I CTNAG 3 cut(s) 93, 415, 908
Hsp92II CATG 7 cut(s) 53, 366, 532, 721, 871, 897, 926
KpnI GGTACC 1 cut(s) 628
Kzo9I GATC 4 cut(s) 163, 213, 500, 589
LmnI GCTCC 2 cut(s) 72, 416
Lsp1109I GCAGC 1 cut(s) 916
LweI GCATC 4 cut(s) 398, 463, 786, 804
MaeI CTAG 1 cut(s) 603
MaeIII GTNAC 1 cut(s) 743
MalI GATC 4 cut(s) 165, 215, 502, 591
MboI GATC 4 cut(s) 163, 213, 500, 589
MboII GAAGA 6 cut(s) 271, 326, 528, 663, 696, 769
MhlI GDGCHC 1 cut(s) 69
MlsI TGGCCA 2 cut(s) 803, 960
MluCI AATT 6 cut(s) 77, 172, 289, 630, 823, 945
MluNI TGGCCA 2 cut(s) 803, 960
MlyI GAGTC 1 cut(s) 332
MmeI TCCRAC 2 cut(s) 94, 587
Mox20I TGGCCA 2 cut(s) 803, 960
MscI TGGCCA 2 cut(s) 803, 960
MseI TTAA 2 cut(s) 108, 540
MslI CAYNNNNRTG 1 cut(s) 459
Msp20I TGGCCA 2 cut(s) 803, 960
MspA1I CMGCKG 1 cut(s) 228
MspI CCGG 3 cut(s) 204, 599, 850
MspR9I CCNGG 2 cut(s) 564, 851
Mva1269I GAATGC 1 cut(s) 44
MvaI CCWGG 1 cut(s) 564
MwoI GCNNNNNNNGC 6 cut(s) 73, 82, 200, 846, 871, 904
NciI CCSGG 1 cut(s) 851
NcoI CCATGG 1 cut(s) 49
NdeII GATC 4 cut(s) 163, 213, 500, 589
NlaIII CATG 7 cut(s) 53, 366, 532, 721, 871, 897, 926
NlaIV GGNNCC 6 cut(s) 104, 122, 202, 626, 854, 914
NmuCI GTSAC 1 cut(s) 743
PcsI WCGNNNNNNNCGW 1 cut(s) 347
PctI GAATGC 1 cut(s) 44
PfeI GAWTC 3 cut(s) 347, 359, 890
PkrI GCNGC 2 cut(s) 848, 906
PleI GAGTC 1 cut(s) 331
PpsI GAGTC 1 cut(s) 331
PpuMI RGGWCCY 1 cut(s) 664
PshBI ATTAAT 1 cut(s) 540
Psp5II RGGWCCY 1 cut(s) 664
Psp6I CCWGG 1 cut(s) 562
PspGI CCWGG 1 cut(s) 562
PspN4I GGNNCC 6 cut(s) 104, 122, 202, 626, 854, 914
PspPI GGNCC 4 cut(s) 664, 721, 853, 913
PspPPI RGGWCCY 1 cut(s) 664
RsaI GTAC 3 cut(s) 55, 248, 626
RsaNI GTAC 3 cut(s) 54, 247, 625
RseI CAYNNNNRTG 1 cut(s) 459
SaqAI TTAA 2 cut(s) 108, 540
SatI GCNGC 2 cut(s) 847, 905
Sau3AI GATC 4 cut(s) 163, 213, 500, 589
Sau96I GGNCC 4 cut(s) 664, 721, 853, 913
ScaI AGTACT 1 cut(s) 248
SchI GAGTC 1 cut(s) 332
ScrFI CCNGG 2 cut(s) 564, 851
SduI GDGCHC 1 cut(s) 69
SfaNI GCATC 4 cut(s) 398, 463, 786, 804
SinI GGWCC 4 cut(s) 664, 721, 853, 913
SmiMI CAYNNNNRTG 1 cut(s) 459
SmlI CTYRAG 1 cut(s) 725
SmoI CTYRAG 1 cut(s) 725
Sse9I AATT 6 cut(s) 77, 172, 289, 630, 823, 945
SsiI CCGC 4 cut(s) 74, 228, 846, 887
SspMI CTAG 1 cut(s) 603
StyD4I CCNGG 2 cut(s) 562, 849
StyI CCWWGG 2 cut(s) 49, 219
TaqI TCGA 1 cut(s) 372
TasI AATT 6 cut(s) 77, 172, 289, 630, 823, 945
TatI WGTACW 1 cut(s) 246
TauI GCSGC 1 cut(s) 849
TfiI GAWTC 3 cut(s) 347, 359, 890
Tru1I TTAA 2 cut(s) 108, 540
Tru9I TTAA 2 cut(s) 108, 540
TscAI CASTG 3 cut(s) 69, 789, 968
TseFI GTSAC 1 cut(s) 743
TseI GCWGC 1 cut(s) 904
Tsp45I GTSAC 1 cut(s) 743
TspDTI ATGAA 5 cut(s) 198, 282, 351, 690, 882
TspGWI ACGGA 1 cut(s) 498
TspRI CASTG 3 cut(s) 69, 789, 968
VpaK11BI GGWCC 4 cut(s) 664, 721, 853, 913
VspI ATTAAT 1 cut(s) 540
XagI CCTNNNNNAGG 1 cut(s) 946
XapI RAATTY 1 cut(s) 823
XspI CTAG 1 cut(s) 603
ZrmI AGTACT 1 cut(s) 248
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.