MD17G1079500.v1.1

Protein of unknown function (DUF789)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr17
OG0012257
Physical Location & Seq
Reverse (-)
6565019 .. 6568847
3829 bp
Loading structure...
UTR
Exon/CDS
Intron
MD17G1079500.v1.1.491

Sequence Viewer

Length: 972 bp
ATGATATTAGACAAAGGGTCAATGCAATCAAACCTTGACTGCTTCCTCCATTCTACAACCCCGGTGATCCAACCCCAATTCCTACCCAAGTCTGAGATGAGGAACCTCAATCGGCTATGGCATCCATGGGAGAGAGAAAAGGTTGAGTATTTCACATTGAGTGATCTCTGGAATTGCTATGATGAATGGAGTGCTTATGGCGCCGGAGTTCCAATCGTCATGGACGGCGGCGAGACTCTTGTGCAGTACTATGTGCCTTACCTCTCTGCGATCCAAATTTTCACTAGCAATTCATCTGTGAACAGCTTCAGGGAAGAGCCTGAGTCGGGTGACTGCGAGACTAGGGATTCGTTTAGCGATTCGTGCAGCTTTGAGAGCGAAAATGATAAGTTGTGGAGATGGGATGGATGCTCTTCAGAAGATGGCGGGTACGAGCAAGACAATCTCTTGCATGTGAATGATAGATTAGGGTACCGATATTTTGAGTACTTTGAGAGATCAACTCCCTATGGAAGAGTTCCTCTCATGGATAAGATCAATACATTAGCGCAACGATACCCAGGGTTGATGTCATTAAGGAGTGTTGATCTCTCACCAGCTAGTTGGATGGCTGTTTCTTGGTACCCAATTTATCACATTCCGATGGGAAGGACTATAAAGGATCTGTCCACATCCTTCCTCACATACCACACCCTTTCATCTTCATTTCAAGACATGGACCTTGAGGACGATATTGAGAACGATGAGCAACGGAAGCGAAAGAAAGGGGAAGGCATCTCTCTCCCTCCATTTGGTTTGGCCACTTACAAGATGCAAGGGAGTGTGTGGGTCTCAGGCAACTGTGGAAGGGACCAAGAGAGGCTCATGTCGCTATTGAGCGTGGCGGATTCTTGGCTAAAGCAACTTAAGGTCCAGCACCATGACTTCAACTACTTCACAACTATTAGGCGTGGCCAGTGCCACTACCTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF789

Protein Analysis

324

Amino Acids

37.57

Weight (kDa)

5.02

Isoelectric Point (pI)

48.64

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF789 PF05623 10 - 312 1.7e-111 Protein of unknown function (DUF789)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012257)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G03420
fragaria_vesca FvH4_6g45060 FvH4_6g45060
malus_domestica MD09G1090400.v1.1 MD17G1079500.v1.1
prunus_persica Prupe.3G235200_v2.0.a1 Prupe.3G235200_v2.0.a1
pyrus_communis pycom09g01510 pycom17g07850
rosa_chinensis RchiOBHm_Chr2g0162411
rosa_laevigata RLG00000021345
rosa_multiflora Rmu_sc0004020.1_g000002
rosa_roxburghii Rroxscaffold_2G00087950
rosa_rugosa Rorug02G0497800
rosa_samantha Rh2AG563500 Rh2BG576200 Rh2CG546300 Rh2DG586200
rosa_wichuraiana Rw2G046640

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 2 cut(s) 471, 621
AccB1I GGYRCC 3 cut(s) 200, 471, 621
AciI CCGC 3 cut(s) 228, 426, 884
AclWI GGATC 3 cut(s) 61, 265, 669
AcoI YGGCCR 2 cut(s) 798, 952
AcsI RAATTY 1 cut(s) 276
AcuI CTGAAG 2 cut(s) 292, 399
AcyI GRCGYC 1 cut(s) 201
AfaI GTAC 5 cut(s) 248, 431, 473, 488, 623
AfiI CCNNNNNNNGG 2 cut(s) 326, 791
AflII CTTAAG 1 cut(s) 905
AgsI TTSAA 2 cut(s) 710, 928
AhdI GACNNNNNGTC 1 cut(s) 16
AjnI CCWGG 1 cut(s) 559
AluBI AGCT 3 cut(s) 306, 369, 599
AluI AGCT 3 cut(s) 306, 369, 599
Alw26I GTCTC 3 cut(s) 227, 332, 835
AlwI GGATC 3 cut(s) 61, 265, 669
AoxI GGCC 2 cut(s) 798, 952
ApeKI GCWGC 1 cut(s) 366
ApoI RAATTY 1 cut(s) 276
ArsI GACNNNNNNTTYG 2 cut(s) 331, 363
Asp700I GAANNNNTTC 1 cut(s) 305
Asp718I GGTACC 2 cut(s) 471, 621
AspLEI GCGC 2 cut(s) 203, 550
AspS9I GGNCC 3 cut(s) 718, 850, 910
AsuC2I CCSGG 1 cut(s) 62
AsuHPI GGTGA 3 cut(s) 76, 341, 585
AvaII GGWCC 3 cut(s) 718, 850, 910
BalI TGGCCA 2 cut(s) 800, 954
BanI GGYRCC 3 cut(s) 200, 471, 621
BbvI GCAGC 1 cut(s) 378
BccI CCATC 5 cut(s) 393, 398, 416, 601, 637
BceAI ACGGC 1 cut(s) 241
BciT130I CCWGG 1 cut(s) 561
BcnI CCSGG 1 cut(s) 62
BcoDI GTCTC 3 cut(s) 227, 332, 835
BfaI CTAG 3 cut(s) 285, 342, 600
BfoI RGCGCY 1 cut(s) 204
BfrI CTTAAG 1 cut(s) 905
BisI GCNGC 2 cut(s) 229, 367
BlsI GCNGC 2 cut(s) 230, 368
BmcAI AGTACT 2 cut(s) 248, 488
Bme1390I CCNGG 2 cut(s) 62, 561
Bme18I GGWCC 3 cut(s) 718, 850, 910
BmeRI GACNNNNNGTC 1 cut(s) 16
BmgT120I GGNCC 3 cut(s) 718, 850, 910
BmiI GGNNCC 5 cut(s) 104, 202, 473, 623, 851
BmrFI CCNGG 2 cut(s) 62, 561
BmsI GCATC 4 cut(s) 130, 398, 783, 801
BplI GAGNNNNNCTC 4 cut(s) 487, 519, 507, 539
BpuEI CTTGAG 1 cut(s) 743
BpuMI CCSGG 1 cut(s) 62
BsaHI GRCGYC 1 cut(s) 201
BsaI GGTCTC 1 cut(s) 835
BsaJI CCNNGG 4 cut(s) 60, 125, 559, 560
Bsc4I CCNNNNNNNGG 2 cut(s) 326, 791
Bse1I ACTGG 1 cut(s) 955
BseBI CCWGG 1 cut(s) 561
BseDI CCNNGG 4 cut(s) 60, 125, 559, 560
BseGI GGATG 5 cut(s) 121, 409, 413, 612, 671
BseLI CCNNNNNNNGG 2 cut(s) 326, 791
BseMII CTCAG 3 cut(s) 84, 312, 846
BseNI ACTGG 1 cut(s) 955
BseXI GCAGC 1 cut(s) 378
BsgI GTGCAG 2 cut(s) 263, 385
BshFI GGCC 2 cut(s) 800, 954
BshNI GGYRCC 3 cut(s) 200, 471, 621
BsiSI CCGG 2 cut(s) 62, 204
BslFI GGGAC 1 cut(s) 863
BslI CCNNNNNNNGG 2 cut(s) 326, 791
BsmAI GTCTC 3 cut(s) 227, 332, 835
BsmFI GGGAC 1 cut(s) 863
BsnI GGCC 2 cut(s) 800, 954
Bso31I GGTCTC 1 cut(s) 835
Bsp143I GATC 7 cut(s) 66, 163, 270, 497, 534, 586, 661
Bsp19I CCATGG 1 cut(s) 125
BspACI CCGC 3 cut(s) 228, 426, 884
BspANI GGCC 2 cut(s) 800, 954
BspCNI CTCAG 3 cut(s) 85, 313, 845
BspLI GGNNCC 5 cut(s) 104, 202, 473, 623, 851
BspPI GGATC 3 cut(s) 61, 265, 669
BspQI GCTCTTC 2 cut(s) 309, 418
BspT107I GGYRCC 3 cut(s) 200, 471, 621
BspTI CTTAAG 1 cut(s) 905
BspTNI GGTCTC 1 cut(s) 835
BsrI ACTGG 1 cut(s) 955
BssECI CCNNGG 4 cut(s) 60, 125, 559, 560
BssMI GATC 7 cut(s) 66, 163, 270, 497, 534, 586, 661
BssNI GRCGYC 1 cut(s) 201
BssT1I CCWWGG 1 cut(s) 125
Bst2UI CCWGG 1 cut(s) 561
Bst4CI ACNGT 1 cut(s) 842
Bst6I CTCTTC 3 cut(s) 309, 418, 508
BstACI GRCGYC 1 cut(s) 201
BstAFI CTTAAG 1 cut(s) 905
BstDEI CTNAG 3 cut(s) 93, 321, 832
BstDSI CCRYGG 1 cut(s) 125
BstF5I GGATG 5 cut(s) 121, 409, 413, 612, 671
BstH2I RGCGCY 1 cut(s) 204
BstHHI GCGC 2 cut(s) 203, 550
BstKTI GATC 7 cut(s) 69, 166, 273, 500, 537, 589, 664
BstMAI GTCTC 3 cut(s) 227, 332, 835
BstMBI GATC 7 cut(s) 66, 163, 270, 497, 534, 586, 661
BstMWI GCNNNNNNNGC 5 cut(s) 200, 363, 375, 754, 868
BstNI CCWGG 1 cut(s) 561
BstNSI RCATGY 1 cut(s) 455
BstSCI CCNGG 2 cut(s) 60, 559
BstV1I GCAGC 1 cut(s) 378
BstX2I RGATCY 1 cut(s) 661
BstXI CCANNNNNNTGG 1 cut(s) 603
BstYI RGATCY 1 cut(s) 661
BsuRI GGCC 2 cut(s) 800, 954
BtgI CCRYGG 1 cut(s) 125
BtsCI GGATG 5 cut(s) 121, 409, 413, 612, 671
BtsIMutI CAGTG 1 cut(s) 962
CfoI GCGC 2 cut(s) 203, 550
Cfr13I GGNCC 3 cut(s) 718, 850, 910
Csp6I GTAC 5 cut(s) 247, 430, 472, 487, 622
CviAII CATG 7 cut(s) 126, 220, 452, 526, 715, 865, 920
CviQI GTAC 5 cut(s) 247, 430, 472, 487, 622
DdeI CTNAG 3 cut(s) 93, 321, 832
DinI GGCGCC 1 cut(s) 202
DpnI GATC 7 cut(s) 68, 165, 272, 499, 536, 588, 663
DpnII GATC 7 cut(s) 66, 163, 270, 497, 534, 586, 661
DriI GACNNNNNGTC 1 cut(s) 16
EaeI YGGCCR 2 cut(s) 798, 952
Eam1104I CTCTTC 3 cut(s) 309, 418, 508
Eam1105I GACNNNNNGTC 1 cut(s) 16
EarI CTCTTC 3 cut(s) 309, 418, 508
EciI GGCGGA 1 cut(s) 899
Eco130I CCWWGG 1 cut(s) 125
Eco31I GGTCTC 1 cut(s) 835
Eco47I GGWCC 3 cut(s) 718, 850, 910
Eco57I CTGAAG 2 cut(s) 292, 399
EcoRII CCWGG 1 cut(s) 559
EcoT14I CCWWGG 1 cut(s) 125
EgeI GGCGCC 1 cut(s) 202
EheI GGCGCC 1 cut(s) 202
ErhI CCWWGG 1 cut(s) 125
FaeI CATG 7 cut(s) 129, 223, 455, 529, 718, 868, 923
FaqI GGGAC 1 cut(s) 863
FatI CATG 7 cut(s) 125, 219, 451, 525, 714, 864, 919
FauI CCCGC 1 cut(s) 419
Fnu4HI GCNGC 2 cut(s) 229, 367
FokI GGATG 5 cut(s) 108, 416, 420, 619, 658
Fsp4HI GCNGC 2 cut(s) 229, 367
FspBI CTAG 3 cut(s) 285, 342, 600
GlaI GCGC 2 cut(s) 202, 549
GluI GCNGC 2 cut(s) 229, 367
HaeII RGCGCY 1 cut(s) 204
HaeIII GGCC 2 cut(s) 800, 954
HapII CCGG 2 cut(s) 62, 204
HhaI GCGC 2 cut(s) 203, 550
Hin1I GRCGYC 1 cut(s) 201
Hin1II CATG 7 cut(s) 129, 223, 455, 529, 718, 868, 923
Hin6I GCGC 2 cut(s) 201, 548
HinP1I GCGC 2 cut(s) 201, 548
HinfI GANTC 5 cut(s) 235, 323, 347, 359, 887
HpaII CCGG 2 cut(s) 62, 204
HphI GGTGA 3 cut(s) 76, 341, 585
Hpy166II GTNNAC 2 cut(s) 301, 669
Hpy188I TCNGA 3 cut(s) 94, 418, 642
Hpy188III TCNNGA 2 cut(s) 169, 710
Hpy8I GTNNAC 2 cut(s) 301, 669
HpyAV CCTTC 4 cut(s) 642, 685, 764, 840
HpyCH4III ACNGT 1 cut(s) 842
HpyCH4V TGCA 5 cut(s) 25, 244, 366, 451, 814
HpyF10VI GCNNNNNNNGC 5 cut(s) 200, 363, 375, 754, 868
HpyF3I CTNAG 3 cut(s) 93, 321, 832
Hsp92I GRCGYC 1 cut(s) 201
Hsp92II CATG 7 cut(s) 129, 223, 455, 529, 718, 868, 923
HspAI GCGC 2 cut(s) 201, 548
KasI GGCGCC 1 cut(s) 200
KpnI GGTACC 2 cut(s) 475, 625
Kzo9I GATC 7 cut(s) 66, 163, 270, 497, 534, 586, 661
LguI GCTCTTC 2 cut(s) 309, 418
Lsp1109I GCAGC 1 cut(s) 378
LweI GCATC 4 cut(s) 130, 398, 783, 801
MaeI CTAG 3 cut(s) 285, 342, 600
MaeIII GTNAC 1 cut(s) 329
MalI GATC 7 cut(s) 68, 165, 272, 499, 536, 588, 663
MboI GATC 7 cut(s) 66, 163, 270, 497, 534, 586, 661
MboII GAAGA 5 cut(s) 326, 405, 431, 525, 693
MflI RGATCY 1 cut(s) 661
MlsI TGGCCA 2 cut(s) 800, 954
MluCI AATT 5 cut(s) 77, 172, 276, 289, 627
MluNI TGGCCA 2 cut(s) 800, 954
Mly113I GGCGCC 1 cut(s) 201
MlyI GAGTC 2 cut(s) 229, 332
MmeI TCCRAC 2 cut(s) 94, 584
MnlI CCTC 9 cut(s) 56, 93, 116, 272, 531, 689, 718, 795, 852
Mox20I TGGCCA 2 cut(s) 800, 954
MroXI GAANNNNTTC 1 cut(s) 305
MscI TGGCCA 2 cut(s) 800, 954
MseI TTAA 3 cut(s) 575, 906, 970
MslI CAYNNNNRTG 2 cut(s) 456, 641
Msp20I TGGCCA 2 cut(s) 800, 954
MspCI CTTAAG 1 cut(s) 905
MspI CCGG 2 cut(s) 62, 204
MspR9I CCNGG 2 cut(s) 62, 561
MvaI CCWGG 1 cut(s) 561
MwoI GCNNNNNNNGC 5 cut(s) 200, 363, 375, 754, 868
NarI GGCGCC 1 cut(s) 201
NciI CCSGG 1 cut(s) 62
NcoI CCATGG 1 cut(s) 125
NdeII GATC 7 cut(s) 66, 163, 270, 497, 534, 586, 661
NlaIII CATG 7 cut(s) 129, 223, 455, 529, 718, 868, 923
NlaIV GGNNCC 5 cut(s) 104, 202, 473, 623, 851
NmuCI GTSAC 1 cut(s) 329
NspI RCATGY 1 cut(s) 455
PasI CCCWGGG 1 cut(s) 560
PciSI GCTCTTC 2 cut(s) 309, 418
PdmI GAANNNNTTC 1 cut(s) 305
PfeI GAWTC 3 cut(s) 347, 359, 887
PkrI GCNGC 2 cut(s) 230, 368
PleI GAGTC 2 cut(s) 229, 331
PluTI GGCGCC 1 cut(s) 204
PpsI GAGTC 2 cut(s) 229, 331
Psp6I CCWGG 1 cut(s) 559
PspGI CCWGG 1 cut(s) 559
PspN4I GGNNCC 5 cut(s) 104, 202, 473, 623, 851
PspPI GGNCC 3 cut(s) 718, 850, 910
PsuI RGATCY 1 cut(s) 661
RsaI GTAC 5 cut(s) 248, 431, 473, 488, 623
RsaNI GTAC 5 cut(s) 247, 430, 472, 487, 622
RseI CAYNNNNRTG 2 cut(s) 456, 641
SapI GCTCTTC 2 cut(s) 309, 418
SaqAI TTAA 3 cut(s) 575, 906, 970
SatI GCNGC 2 cut(s) 229, 367
Sau3AI GATC 7 cut(s) 66, 163, 270, 497, 534, 586, 661
Sau96I GGNCC 3 cut(s) 718, 850, 910
ScaI AGTACT 2 cut(s) 248, 488
SchI GAGTC 2 cut(s) 229, 332
ScrFI CCNGG 2 cut(s) 62, 561
SfaNI GCATC 4 cut(s) 130, 398, 783, 801
SfoI GGCGCC 1 cut(s) 202
SinI GGWCC 3 cut(s) 718, 850, 910
SmiMI CAYNNNNRTG 2 cut(s) 456, 641
SmlI CTYRAG 2 cut(s) 722, 905
SmoI CTYRAG 2 cut(s) 722, 905
Sse9I AATT 5 cut(s) 77, 172, 276, 289, 627
SsiI CCGC 3 cut(s) 228, 426, 884
SspDI GGCGCC 1 cut(s) 200
SspMI CTAG 3 cut(s) 285, 342, 600
StyD4I CCNGG 2 cut(s) 60, 559
StyI CCWWGG 1 cut(s) 125
TaaI ACNGT 1 cut(s) 842
TasI AATT 5 cut(s) 77, 172, 276, 289, 627
TatI WGTACW 2 cut(s) 246, 486
TauI GCSGC 1 cut(s) 231
TfiI GAWTC 3 cut(s) 347, 359, 887
Tru1I TTAA 3 cut(s) 575, 906, 970
Tru9I TTAA 3 cut(s) 575, 906, 970
TscAI CASTG 1 cut(s) 962
TseFI GTSAC 1 cut(s) 329
TseI GCWGC 1 cut(s) 366
Tsp45I GTSAC 1 cut(s) 329
TspDTI ATGAA 4 cut(s) 198, 282, 687, 693
TspGWI ACGGA 1 cut(s) 766
TspRI CASTG 1 cut(s) 962
Vha464I CTTAAG 1 cut(s) 905
VpaK11BI GGWCC 3 cut(s) 718, 850, 910
XapI RAATTY 1 cut(s) 276
XceI RCATGY 1 cut(s) 455
XmnI GAANNNNTTC 1 cut(s) 305
XspI CTAG 3 cut(s) 285, 342, 600
ZrmI AGTACT 2 cut(s) 248, 488
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.