Rmu_sc0004020.1_g000002

Protein of unknown function (DUF789)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004020.1
OG0012257
Physical Location & Seq
Reverse (-)
14931 .. 17230
2300 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0004020.1_g000002.1.cds

Sequence Viewer

Length: 957 bp
atgcagtcaaaccttgaatgcttcctccatggtacaaccccagtgctccaaccgcaattcttgcccaagtctgagattaggaaccttaatcggctatggcacccgtgggagagagaaaaggttgagtatttcacattgagtgatctgtggaattgttttgatgaatggagtgcttatggtgccggagttccgatcaccttggacagcggtgagacccttgtgcagtactatgtgccttacctctctgctatccaaatcttcaccagcaattcatctgtaaatagcttcagggaagaaaccgagtcaggtgattgtgagacgagggattcgtttagtgattcatgcagtttcgagagtgaaagtgataagttatggagatgggatggatgctcctcagaggaaggtggatttgagcaagacaataatctgtggcatctgaatgatagattaggccatctatattttgattattttgagagatcaactccgtatggaagagttcctctcatggataagattaatggattagctcaaagataccctggcttgatgtcattgaggagtgttgatctttcaccagctagttggatgtctgttgcttggtacccaatttatcatattccaatgggaagaactataaaggacctctccacatccttcctcacttaccacacgctttcatcttcttttcaagacatggaccttgaggatgatatggagagtgacgagcaacggaagagaaagaaaggagaaggcatctcactgcctccatttgggttggccacttacaagatgcaagggaatttgtgggtctcgggcaactgcggccgggaccaagagaggctcatgtcgctgttgagtgtggcggattcatggctaaagcagctaagggtccaacaccatgacttcaactacttcacctcaattaggcgtggaggccagtgccactacctctga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF789

Protein Analysis

318

Amino Acids

36.94

Weight (kDa)

5.02

Isoelectric Point (pI)

57.88

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012257)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G03420
fragaria_vesca FvH4_6g45060 FvH4_6g45060
malus_domestica MD09G1090400.v1.1 MD17G1079500.v1.1
prunus_persica Prupe.3G235200_v2.0.a1 Prupe.3G235200_v2.0.a1
pyrus_communis pycom09g01510 pycom17g07850
rosa_chinensis RchiOBHm_Chr2g0162411
rosa_laevigata RLG00000021345
rosa_multiflora Rmu_sc0004020.1_g000002
rosa_roxburghii Rroxscaffold_2G00087950
rosa_rugosa Rorug02G0497800
rosa_samantha Rh2AG563500 Rh2BG576200 Rh2CG546300 Rh2DG586200
rosa_wichuraiana Rw2G046640

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 603
AccB1I GGYRCC 3 cut(s) 99, 179, 603
AciI CCGC 4 cut(s) 53, 207, 825, 866
AcoI YGGCCR 2 cut(s) 780, 826
AcsI RAATTY 1 cut(s) 802
AcuI CTGAAG 1 cut(s) 271
AfaI GTAC 3 cut(s) 34, 227, 605
AfiI CCNNNNNNNGG 2 cut(s) 773, 927
AgsI TTSAA 3 cut(s) 17, 692, 910
AjnI CCWGG 1 cut(s) 541
AluBI AGCT 4 cut(s) 285, 530, 581, 886
AluI AGCT 4 cut(s) 285, 530, 581, 886
Alw21I GWGCWC 1 cut(s) 48
Alw26I GTCTC 3 cut(s) 206, 311, 817
Ama87I CYCGRG 1 cut(s) 814
AoxI GGCC 4 cut(s) 451, 780, 826, 937
ApeKI GCWGC 1 cut(s) 883
ApoI RAATTY 1 cut(s) 802
ArsI GACNNNNNNTTYG 2 cut(s) 310, 342
AseI ATTAAT 1 cut(s) 519
Asp718I GGTACC 1 cut(s) 603
AspS9I GGNCC 4 cut(s) 643, 700, 832, 892
AsuC2I CCSGG 1 cut(s) 830
AsuHPI GGTGA 6 cut(s) 187, 221, 253, 320, 567, 910
AvaI CYCGRG 1 cut(s) 814
AvaII GGWCC 4 cut(s) 643, 700, 832, 892
BalI TGGCCA 1 cut(s) 782
BanI GGYRCC 3 cut(s) 99, 179, 603
Bbv12I GWGCWC 1 cut(s) 48
BbvI GCAGC 1 cut(s) 895
BccI CCATC 3 cut(s) 372, 377, 462
BciT130I CCWGG 1 cut(s) 543
BcnI CCSGG 1 cut(s) 830
BcoDI GTCTC 3 cut(s) 206, 311, 817
BfaI CTAG 1 cut(s) 582
BisI GCNGC 2 cut(s) 826, 884
BlsI GCNGC 2 cut(s) 827, 885
BmcAI AGTACT 1 cut(s) 227
Bme1390I CCNGG 2 cut(s) 543, 830
Bme18I GGWCC 4 cut(s) 643, 700, 832, 892
BmeT110I CYCGRG 1 cut(s) 814
BmgT120I GGNCC 4 cut(s) 643, 700, 832, 892
BmiI GGNNCC 6 cut(s) 83, 101, 181, 605, 833, 893
BmrFI CCNGG 2 cut(s) 543, 830
BmrI ACTGGG 1 cut(s) 35
BmsI GCATC 4 cut(s) 377, 442, 765, 783
BmuI ACTGGG 1 cut(s) 35
BplI GAGNNNNNCTC 4 cut(s) 469, 501, 489, 521
Bpu10I CCTNAGC 1 cut(s) 887
BpuEI CTTGAG 1 cut(s) 725
BpuMI CCSGG 1 cut(s) 830
BsaI GGTCTC 2 cut(s) 206, 817
BsaJI CCNNGG 4 cut(s) 28, 104, 198, 541
Bsc4I CCNNNNNNNGG 2 cut(s) 773, 927
Bse1I ACTGG 2 cut(s) 41, 940
BseBI CCWGG 1 cut(s) 543
BseDI CCNNGG 4 cut(s) 28, 104, 198, 541
BseGI GGATG 5 cut(s) 388, 392, 594, 653, 715
BseLI CCNNNNNNNGG 2 cut(s) 773, 927
BseMII CTCAG 2 cut(s) 63, 408
BseNI ACTGG 2 cut(s) 41, 940
BseRI GAGGAG 2 cut(s) 382, 574
BseX3I CGGCCG 1 cut(s) 826
BseXI GCAGC 1 cut(s) 895
BsgI GTGCAG 1 cut(s) 242
Bsh1285I CGRYCG 1 cut(s) 829
BshFI GGCC 4 cut(s) 453, 782, 828, 939
BshNI GGYRCC 3 cut(s) 99, 179, 603
BsiEI CGRYCG 1 cut(s) 829
BsiHKAI GWGCWC 1 cut(s) 48
BsiHKCI CYCGRG 1 cut(s) 814
BsiSI CCGG 2 cut(s) 183, 829
BslFI GGGAC 1 cut(s) 845
BslI CCNNNNNNNGG 2 cut(s) 773, 927
BsmAI GTCTC 3 cut(s) 206, 311, 817
BsmBI CGTCTC 1 cut(s) 311
BsmFI GGGAC 1 cut(s) 845
BsmI GAATGC 1 cut(s) 23
BsnI GGCC 4 cut(s) 453, 782, 828, 939
Bso31I GGTCTC 2 cut(s) 206, 817
BsoBI CYCGRG 1 cut(s) 814
Bsp1286I GDGCHC 1 cut(s) 48
Bsp143I GATC 4 cut(s) 142, 192, 479, 568
Bsp19I CCATGG 1 cut(s) 28
BspACI CCGC 4 cut(s) 53, 207, 825, 866
BspANI GGCC 4 cut(s) 453, 782, 828, 939
BspCNI CTCAG 2 cut(s) 64, 407
BspLI GGNNCC 6 cut(s) 83, 101, 181, 605, 833, 893
BspT107I GGYRCC 3 cut(s) 99, 179, 603
BspTNI GGTCTC 2 cut(s) 206, 817
BsrI ACTGG 2 cut(s) 41, 940
BssECI CCNNGG 4 cut(s) 28, 104, 198, 541
BssMI GATC 4 cut(s) 142, 192, 479, 568
BssT1I CCWWGG 2 cut(s) 28, 198
Bst2UI CCWGG 1 cut(s) 543
Bst6I CTCTTC 2 cut(s) 490, 731
BstAPI GCANNNNNTGC 1 cut(s) 61
BstDEI CTNAG 3 cut(s) 72, 394, 887
BstDSI CCRYGG 2 cut(s) 28, 104
BstENI CCTNNNNNAGG 1 cut(s) 925
BstF5I GGATG 5 cut(s) 388, 392, 594, 653, 715
BstKTI GATC 4 cut(s) 145, 195, 482, 571
BstMAI GTCTC 3 cut(s) 206, 311, 817
BstMBI GATC 4 cut(s) 142, 192, 479, 568
BstMCI CGRYCG 1 cut(s) 829
BstMWI GCNNNNNNNGC 6 cut(s) 52, 61, 179, 825, 850, 883
BstNI CCWGG 1 cut(s) 543
BstSCI CCNGG 2 cut(s) 541, 828
BstV1I GCAGC 1 cut(s) 895
BstXI CCANNNNNNTGG 1 cut(s) 585
BstZI CGGCCG 1 cut(s) 826
BsuRI GGCC 4 cut(s) 453, 782, 828, 939
BtgI CCRYGG 2 cut(s) 28, 104
BtsCI GGATG 5 cut(s) 388, 392, 594, 653, 715
BtsI GCAGTG 1 cut(s) 761
BtsIMutI CAGTG 3 cut(s) 48, 761, 947
Cfr13I GGNCC 4 cut(s) 643, 700, 832, 892
Csp6I GTAC 3 cut(s) 33, 226, 604
CviAII CATG 7 cut(s) 29, 342, 508, 697, 847, 873, 902
CviQI GTAC 3 cut(s) 33, 226, 604
DdeI CTNAG 3 cut(s) 72, 394, 887
DpnI GATC 4 cut(s) 144, 194, 481, 570
DpnII GATC 4 cut(s) 142, 192, 479, 568
EaeI YGGCCR 2 cut(s) 780, 826
EagI CGGCCG 1 cut(s) 826
Eam1104I CTCTTC 2 cut(s) 490, 731
EarI CTCTTC 2 cut(s) 490, 731
EciI GGCGGA 1 cut(s) 881
EclXI CGGCCG 1 cut(s) 826
Eco130I CCWWGG 2 cut(s) 28, 198
Eco31I GGTCTC 2 cut(s) 206, 817
Eco47I GGWCC 4 cut(s) 643, 700, 832, 892
Eco52I CGGCCG 1 cut(s) 826
Eco57I CTGAAG 1 cut(s) 271
Eco88I CYCGRG 1 cut(s) 814
EcoNI CCTNNNNNAGG 1 cut(s) 925
EcoO109I RGGNCCY 1 cut(s) 643
EcoRII CCWGG 1 cut(s) 541
EcoT14I CCWWGG 2 cut(s) 28, 198
ErhI CCWWGG 2 cut(s) 28, 198
Esp3I CGTCTC 1 cut(s) 311
FaeI CATG 7 cut(s) 32, 345, 511, 700, 850, 876, 905
FaqI GGGAC 1 cut(s) 845
FatI CATG 7 cut(s) 28, 341, 507, 696, 846, 872, 901
Fnu4HI GCNGC 2 cut(s) 826, 884
FokI GGATG 5 cut(s) 395, 399, 601, 640, 722
Fsp4HI GCNGC 2 cut(s) 826, 884
FspBI CTAG 1 cut(s) 582
GluI GCNGC 2 cut(s) 826, 884
HaeIII GGCC 4 cut(s) 453, 782, 828, 939
HapII CCGG 2 cut(s) 183, 829
Hin1II CATG 7 cut(s) 32, 345, 511, 700, 850, 876, 905
HinfI GANTC 4 cut(s) 302, 326, 338, 869
HpaII CCGG 2 cut(s) 183, 829
HphI GGTGA 6 cut(s) 187, 221, 253, 320, 567, 910
Hpy188I TCNGA 5 cut(s) 73, 192, 397, 438, 956
Hpy188III TCNNGA 2 cut(s) 352, 692
HpyAV CCTTC 3 cut(s) 395, 667, 746
HpyCH4V TGCA 4 cut(s) 4, 223, 345, 796
HpyF10VI GCNNNNNNNGC 6 cut(s) 52, 61, 179, 825, 850, 883
HpyF3I CTNAG 3 cut(s) 72, 394, 887
Hsp92II CATG 7 cut(s) 32, 345, 511, 700, 850, 876, 905
KpnI GGTACC 1 cut(s) 607
Kzo9I GATC 4 cut(s) 142, 192, 479, 568
LmnI GCTCC 2 cut(s) 51, 395
Lsp1109I GCAGC 1 cut(s) 895
LweI GCATC 4 cut(s) 377, 442, 765, 783
MaeI CTAG 1 cut(s) 582
MaeIII GTNAC 1 cut(s) 722
MalI GATC 4 cut(s) 144, 194, 481, 570
MboI GATC 4 cut(s) 142, 192, 479, 568
MboII GAAGA 6 cut(s) 250, 305, 507, 642, 675, 748
MhlI GDGCHC 1 cut(s) 48
MlsI TGGCCA 1 cut(s) 782
MluCI AATT 6 cut(s) 56, 151, 268, 609, 802, 924
MluNI TGGCCA 1 cut(s) 782
MlyI GAGTC 1 cut(s) 311
MmeI TCCRAC 3 cut(s) 73, 566, 919
Mox20I TGGCCA 1 cut(s) 782
MscI TGGCCA 1 cut(s) 782
MseI TTAA 2 cut(s) 87, 519
MslI CAYNNNNRTG 1 cut(s) 438
Msp20I TGGCCA 1 cut(s) 782
MspA1I CMGCKG 1 cut(s) 207
MspI CCGG 2 cut(s) 183, 829
MspR9I CCNGG 2 cut(s) 543, 830
Mva1269I GAATGC 1 cut(s) 23
MvaI CCWGG 1 cut(s) 543
MwoI GCNNNNNNNGC 6 cut(s) 52, 61, 179, 825, 850, 883
NciI CCSGG 1 cut(s) 830
NcoI CCATGG 1 cut(s) 28
NdeII GATC 4 cut(s) 142, 192, 479, 568
NlaIII CATG 7 cut(s) 32, 345, 511, 700, 850, 876, 905
NlaIV GGNNCC 6 cut(s) 83, 101, 181, 605, 833, 893
NmuCI GTSAC 1 cut(s) 722
PcsI WCGNNNNNNNCGW 1 cut(s) 326
PctI GAATGC 1 cut(s) 23
PfeI GAWTC 3 cut(s) 326, 338, 869
PkrI GCNGC 2 cut(s) 827, 885
PleI GAGTC 1 cut(s) 310
PpsI GAGTC 1 cut(s) 310
PpuMI RGGWCCY 1 cut(s) 643
PshBI ATTAAT 1 cut(s) 519
Psp5II RGGWCCY 1 cut(s) 643
Psp6I CCWGG 1 cut(s) 541
PspGI CCWGG 1 cut(s) 541
PspN4I GGNNCC 6 cut(s) 83, 101, 181, 605, 833, 893
PspPI GGNCC 4 cut(s) 643, 700, 832, 892
PspPPI RGGWCCY 1 cut(s) 643
RsaI GTAC 3 cut(s) 34, 227, 605
RsaNI GTAC 3 cut(s) 33, 226, 604
RseI CAYNNNNRTG 1 cut(s) 438
SaqAI TTAA 2 cut(s) 87, 519
SatI GCNGC 2 cut(s) 826, 884
Sau3AI GATC 4 cut(s) 142, 192, 479, 568
Sau96I GGNCC 4 cut(s) 643, 700, 832, 892
ScaI AGTACT 1 cut(s) 227
SchI GAGTC 1 cut(s) 311
ScrFI CCNGG 2 cut(s) 543, 830
SduI GDGCHC 1 cut(s) 48
SfaNI GCATC 4 cut(s) 377, 442, 765, 783
SinI GGWCC 4 cut(s) 643, 700, 832, 892
SmiMI CAYNNNNRTG 1 cut(s) 438
SmlI CTYRAG 1 cut(s) 704
SmoI CTYRAG 1 cut(s) 704
Sse9I AATT 6 cut(s) 56, 151, 268, 609, 802, 924
SsiI CCGC 4 cut(s) 53, 207, 825, 866
SspMI CTAG 1 cut(s) 582
StyD4I CCNGG 2 cut(s) 541, 828
StyI CCWWGG 2 cut(s) 28, 198
TaqI TCGA 1 cut(s) 351
TasI AATT 6 cut(s) 56, 151, 268, 609, 802, 924
TatI WGTACW 1 cut(s) 225
TauI GCSGC 1 cut(s) 828
TfiI GAWTC 3 cut(s) 326, 338, 869
Tru1I TTAA 2 cut(s) 87, 519
Tru9I TTAA 2 cut(s) 87, 519
TscAI CASTG 3 cut(s) 48, 768, 947
TseFI GTSAC 1 cut(s) 722
TseI GCWGC 1 cut(s) 883
Tsp45I GTSAC 1 cut(s) 722
TspDTI ATGAA 5 cut(s) 177, 261, 330, 669, 861
TspGWI ACGGA 2 cut(s) 477, 748
TspRI CASTG 3 cut(s) 48, 768, 947
VpaK11BI GGWCC 4 cut(s) 643, 700, 832, 892
VspI ATTAAT 1 cut(s) 519
XagI CCTNNNNNAGG 1 cut(s) 925
XapI RAATTY 1 cut(s) 802
XspI CTAG 1 cut(s) 582
ZrmI AGTACT 1 cut(s) 227
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.