AT4G04950

Thioredoxin family

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
Physical Location & Seq
Reverse (-)
2517596 .. 2520062
2467 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G04950.1

Sequence Viewer

Length: 1467 bp
ATGAGCGGTACGGTGAAGGATATCGTTTCAAAGGCGGAGCTTGATAACTTGCGCCAGAGCGGCGCACCAGTCGTGCTTCACTTCTGGGCTTCTTGGTGTGATGCTTCGAAGCAGATGGATCAAGTTTTCTCTCATCTCGCTACTGATTTCCCTCGTGCTCACTTCTTTAGGGTTGAAGCTGAGGAACATCCTGAGATATCTGAGGCTTACTCTGTTGCTGCTGTGCCTTATTTCGTCTTCTTCAAGGATGGTAAAACTGTGGATACACTTGAGGGTGCAGATCCATCAAGTTTAGCTAATAAGGTTGGCAAAGTTGCTGGTTCTAGTACTTCTGCGGAGCCTGCTGCTCCTGCAAGCTTAGGGTTGGCTGCTGGGCCAACGATTCTTGAAACTGTGAAGGAGAATGCGAAAGCTTCTTTACAAGACCGAGCTCAGCCTGTATCTACCGCCGATGCTCTCAAGAGCCGTTTGGAAAAGCTCACTAATTCTCACCCTGTCATGTTATTCATGAAAGGTATTCCTGAAGAGCCTAGGTGTGGGTTTAGCAGGAAAGTAGTTGACATTTTGAAAGAGGTTAACGTTGATTTTGGAAGTTTTGACATACTATCGGATAACGAAGTGCGAGAGGGTTTGAAGAAATTCTCTAACTGGCCAACGTTTCCTCAGCTGTACTGCAACGGAGAGCTTCTTGGTGGAGCTGATATCGCAATAGCGATGCACGAGAGCGGTGAACTAAAAGATGCTTTCAAAGATCTTGGGATCACGACAGTTGGTTCAAAAGAAAGTCAGGATGAAGCTGGAAAAGGAGGAGGGGTTAGTTCAGGAAACACAGGCTTAAGTGAGACCCTCCGAGCTCGGCTCGAAGGTCTGGTCAATTCCAAACCAGTTATGCTGTTCATGAAAGGAAGACCAGAAGAACCAAAGTGTGGGTTCAGTGGGAAAGTGGTTGAAATCCTCAACCAAGAAAAAATCGAGTTTGGGAGTTTCGATATCCTCTTAGATGACGAAGTTCGCCAAGGCCTTAAAGTGTATTCAAACTGGTCAAGCTATCCTCAGCTTTACGTGAAAGGCGAGCTTATGGGTGGATCAGACATTGTCTTGGAGATGCAAAAGAGCGGTGAGCTGAAAAAGGTCTTGACCGAGAAAGGGATCACTGGAGAACAGAGTCTTGAAGATAGATTGAAGGCACTGATCAATTCCTCGGAAGTAATGCTATTCATGAAAGGTTCACCAGATGAACCGAAATGCGGATTTAGCTCCAAAGTTGTGAAAGCATTGAGAGGAGAAAACGTGAGTTTCGGATCGTTTGATATCTTGACTGATGAAGAAGTAAGGCAAGGGATTAAGAATTTCTCAAACTGGCCAACTTTTCCTCAGCTATACTACAAAGGTGAGTTAATTGGAGGATGTGATATCATTATGGAGCTAAGTGAGAGTGGTGATCTCAAAGCAACTCTATCCGAGTAA

Protein Analysis

488

Amino Acids

53.11

Weight (kDa)

5.01

Isoelectric Point (pI)

31.8

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Thioredoxin PF00085 16 - 102 3.9e-15 Thioredoxin
Glutaredoxin PF00462 166 - 229 9.4e-19 Glutaredoxin
Glutaredoxin PF00462 296 - 359 3.8e-16 Glutaredoxin
Glutaredoxin PF00462 403 - 467 5.2e-18 Glutaredoxin
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 926
AccBSI CCGCTC 4 cut(s) 6, 60, 726, 1116
AciI CCGC 8 cut(s) 6, 35, 60, 335, 447, 726, 1116, 1248
AclI AACGTT 2 cut(s) 579, 656
AclWI GGATC 6 cut(s) 126, 275, 767, 1093, 1157, 1309
AcoI YGGCCR 2 cut(s) 650, 1361
AcsI RAATTY 2 cut(s) 638, 1348
AcuI CTGAAG 1 cut(s) 543
AfaI GTAC 3 cut(s) 10, 328, 671
AfiI CCNNNNNNNGG 4 cut(s) 536, 926, 1146, 1247
AflII CTTAAG 1 cut(s) 835
Alw21I GWGCWC 3 cut(s) 160, 433, 856
Alw26I GTCTC 1 cut(s) 836
AlwI GGATC 6 cut(s) 126, 275, 767, 1093, 1157, 1309
AoxI GGCC 4 cut(s) 374, 650, 1018, 1361
ApeKI GCWGC 3 cut(s) 218, 344, 368
ApoI RAATTY 2 cut(s) 638, 1348
ArsI GACNNNNNNTTYG 2 cut(s) 855, 887
Asp700I GAANNNNTTC 1 cut(s) 638
AspA2I CCTAGG 1 cut(s) 530
AspLEI GCGC 2 cut(s) 54, 65
AspS9I GGNCC 1 cut(s) 374
AsuHPI GGTGA 7 cut(s) 25, 482, 740, 1130, 1221, 1403, 1451
AsuII TTCGAA 1 cut(s) 107
AvrII CCTAGG 1 cut(s) 530
BalI TGGCCA 2 cut(s) 652, 1363
BanII GRGCYC 2 cut(s) 433, 856
BauI CACGAG 2 cut(s) 153, 719
BbsI GAAGAC 2 cut(s) 229, 913
Bbv12I GWGCWC 3 cut(s) 160, 433, 856
BbvCI CCTCAGC 4 cut(s) 180, 663, 1053, 1374
BbvI GCAGC 3 cut(s) 205, 331, 355
BccI CCATC 3 cut(s) 109, 242, 292
BceAI ACGGC 1 cut(s) 450
BciVI GTATCC 1 cut(s) 256
BclI TGATCA 1 cut(s) 1191
BcoDI GTCTC 1 cut(s) 836
BfaI CTAG 2 cut(s) 324, 531
BfrI CTTAAG 1 cut(s) 835
BfuI GTATCC 1 cut(s) 256
BglI GCCNNNNNGGC 1 cut(s) 60
BglII AGATCT 1 cut(s) 751
BisI GCNGC 4 cut(s) 61, 219, 345, 369
BlnI CCTAGG 1 cut(s) 530
BlpI GCTNAGC 1 cut(s) 432
BlsI GCNGC 4 cut(s) 62, 220, 346, 370
BmcAI AGTACT 1 cut(s) 328
BmgT120I GGNCC 1 cut(s) 374
BmiI GGNNCC 1 cut(s) 339
BmsI GCATC 5 cut(s) 91, 442, 705, 730, 1095
BpiI GAAGAC 2 cut(s) 229, 913
BplI GAGNNNNNCTC 4 cut(s) 194, 226, 843, 875
BpmI CTGGAG 1 cut(s) 1176
Bpu10I CCTNAGC 5 cut(s) 180, 358, 663, 1053, 1374
Bpu1102I GCTNAGC 1 cut(s) 432
Bpu14I TTCGAA 1 cut(s) 107
BpuEI CTTGAG 2 cut(s) 290, 443
BsaAI YACGTR 1 cut(s) 1063
BsaI GGTCTC 1 cut(s) 836
BsaJI CCNNGG 3 cut(s) 530, 1015, 1200
BsaXI ACNNNNNCTCC 4 cut(s) 798, 828, 1275, 1305
Bsc4I CCNNNNNNNGG 4 cut(s) 536, 926, 1146, 1247
Bse1I ACTGG 6 cut(s) 68, 653, 884, 1043, 1159, 1364
BseDI CCNNGG 3 cut(s) 530, 1015, 1200
BseGI GGATG 4 cut(s) 187, 253, 796, 1412
BseLI CCNNNNNNNGG 4 cut(s) 536, 926, 1146, 1247
BseMII CTCAG 7 cut(s) 171, 183, 192, 446, 677, 1067, 1388
BseNI ACTGG 6 cut(s) 68, 653, 884, 1043, 1159, 1364
BseRI GAGGAG 2 cut(s) 822, 1296
BseXI GCAGC 3 cut(s) 205, 331, 355
BseYI CCCAGC 1 cut(s) 371
BsgI GTGCAG 1 cut(s) 297
BshFI GGCC 4 cut(s) 376, 652, 1020, 1363
BsiHKAI GWGCWC 3 cut(s) 160, 433, 856
BslI CCNNNNNNNGG 4 cut(s) 536, 926, 1146, 1247
BsmAI GTCTC 1 cut(s) 836
BsmI GAATGC 1 cut(s) 409
BsnI GGCC 4 cut(s) 376, 652, 1020, 1363
Bso31I GGTCTC 1 cut(s) 836
Bsp119I TTCGAA 1 cut(s) 107
Bsp1286I GDGCHC 3 cut(s) 160, 433, 856
Bsp143I GATC 9 cut(s) 118, 280, 751, 759, 1085, 1149, 1191, 1301, 1441
Bsp1720I GCTNAGC 1 cut(s) 432
BspACI CCGC 8 cut(s) 6, 35, 60, 335, 447, 726, 1116, 1248
BspANI GGCC 4 cut(s) 376, 652, 1020, 1363
BspCNI CTCAG 7 cut(s) 172, 184, 193, 445, 676, 1066, 1387
BspHI TCATGA 3 cut(s) 507, 897, 1218
BspLI GGNNCC 1 cut(s) 339
BspPI GGATC 6 cut(s) 126, 275, 767, 1093, 1157, 1309
BspQI GCTCTTC 1 cut(s) 519
BspT104I TTCGAA 1 cut(s) 107
BspTI CTTAAG 1 cut(s) 835
BspTNI GGTCTC 1 cut(s) 836
BsrBI CCGCTC 4 cut(s) 6, 60, 726, 1116
BsrI ACTGG 6 cut(s) 68, 653, 884, 1043, 1159, 1364
BssECI CCNNGG 3 cut(s) 530, 1015, 1200
BssMI GATC 9 cut(s) 118, 280, 751, 759, 1085, 1149, 1191, 1301, 1441
BssSI CACGAG 2 cut(s) 153, 719
BssT1I CCWWGG 2 cut(s) 530, 1015
Bst2BI CACGAG 2 cut(s) 153, 719
Bst4CI ACNGT 4 cut(s) 13, 259, 394, 769
Bst6I CTCTTC 1 cut(s) 519
BstAFI CTTAAG 1 cut(s) 835
BstBAI YACGTR 1 cut(s) 1063
BstBI TTCGAA 1 cut(s) 107
BstC8I GCNNGC 3 cut(s) 342, 355, 1073
BstF5I GGATG 4 cut(s) 187, 253, 796, 1412
BstHHI GCGC 2 cut(s) 54, 65
BstKTI GATC 9 cut(s) 121, 283, 754, 762, 1088, 1152, 1194, 1304, 1444
BstMAI GTCTC 1 cut(s) 836
BstMBI GATC 9 cut(s) 118, 280, 751, 759, 1085, 1149, 1191, 1301, 1441
BstMWI GCNNNNNNNGC 5 cut(s) 60, 341, 350, 704, 1254
BstV1I GCAGC 3 cut(s) 205, 331, 355
BstV2I GAAGAC 2 cut(s) 229, 913
BstX2I RGATCY 2 cut(s) 280, 751
BstYI RGATCY 2 cut(s) 280, 751
BsuI GTATCC 1 cut(s) 256
BsuRI GGCC 4 cut(s) 376, 652, 1020, 1363
BtgZI GCGATG 1 cut(s) 728
BtsCI GGATG 4 cut(s) 187, 253, 796, 1412
BtsIMutI CAGTG 3 cut(s) 940, 1152, 1187
Cac8I GCNNGC 3 cut(s) 342, 355, 1073
CciI TCATGA 3 cut(s) 507, 897, 1218
CfoI GCGC 2 cut(s) 54, 65
Cfr13I GGNCC 1 cut(s) 374
Csp6I GTAC 3 cut(s) 9, 327, 670
CviAII CATG 4 cut(s) 499, 508, 898, 1219
CviQI GTAC 3 cut(s) 9, 327, 670
DpnI GATC 9 cut(s) 120, 282, 753, 761, 1087, 1151, 1193, 1303, 1443
DpnII GATC 9 cut(s) 118, 280, 751, 759, 1085, 1149, 1191, 1301, 1441
EaeI YGGCCR 2 cut(s) 650, 1361
Eam1104I CTCTTC 1 cut(s) 519
EarI CTCTTC 1 cut(s) 519
EciI GGCGGA 1 cut(s) 50
Ecl136II GAGCTC 2 cut(s) 431, 854
Eco130I CCWWGG 2 cut(s) 530, 1015
Eco147I AGGCCT 1 cut(s) 1020
Eco24I GRGCYC 2 cut(s) 433, 856
Eco31I GGTCTC 1 cut(s) 836
Eco32I GATATC 6 cut(s) 22, 198, 703, 991, 1312, 1414
Eco53kI GAGCTC 2 cut(s) 431, 854
Eco57I CTGAAG 1 cut(s) 543
EcoICRI GAGCTC 2 cut(s) 431, 854
EcoRV GATATC 6 cut(s) 22, 198, 703, 991, 1312, 1414
EcoT14I CCWWGG 2 cut(s) 530, 1015
EcoT38I GRGCYC 2 cut(s) 433, 856
ErhI CCWWGG 2 cut(s) 530, 1015
FaeI CATG 4 cut(s) 502, 511, 901, 1222
FaiI YATR 9 cut(s) 500, 509, 602, 890, 899, 1079, 1220, 1381, 1421
FalI AAGNNNNNCTT 2 cut(s) 1059, 1091
FatI CATG 4 cut(s) 498, 507, 897, 1218
FbaI TGATCA 1 cut(s) 1191
Fnu4HI GCNGC 4 cut(s) 61, 219, 345, 369
FokI GGATG 4 cut(s) 174, 260, 803, 1419
FriOI GRGCYC 2 cut(s) 433, 856
Fsp4HI GCNGC 4 cut(s) 61, 219, 345, 369
FspBI CTAG 2 cut(s) 324, 531
GlaI GCGC 2 cut(s) 53, 64
GluI GCNGC 4 cut(s) 61, 219, 345, 369
GsaI CCCAGC 1 cut(s) 375
GsuI CTGGAG 1 cut(s) 1176
HaeIII GGCC 4 cut(s) 376, 652, 1020, 1363
HhaI GCGC 2 cut(s) 54, 65
Hin1II CATG 4 cut(s) 502, 511, 901, 1222
Hin6I GCGC 2 cut(s) 52, 63
HinP1I GCGC 2 cut(s) 52, 63
HincII GTYRAC 2 cut(s) 559, 577
HindII GTYRAC 2 cut(s) 559, 577
HindIII AAGCTT 2 cut(s) 355, 411
HinfI GANTC 2 cut(s) 382, 1165
HpaI GTTAAC 1 cut(s) 577
HphI GGTGA 7 cut(s) 25, 482, 740, 1130, 1221, 1403, 1451
Hpy166II GTNNAC 4 cut(s) 559, 577, 731, 1229
Hpy188I TCNGA 7 cut(s) 202, 610, 851, 1090, 1204, 1301, 1462
Hpy8I GTNNAC 4 cut(s) 559, 577, 731, 1229
HpyAV CCTTC 4 cut(s) 10, 391, 857, 1177
HpyCH4III ACNGT 4 cut(s) 13, 259, 394, 769
HpyCH4IV ACGT 4 cut(s) 579, 656, 1062, 1290
HpyCH4V TGCA 5 cut(s) 278, 353, 675, 718, 1108
HpyF10VI GCNNNNNNNGC 5 cut(s) 60, 341, 350, 704, 1254
HpySE526I ACGT 4 cut(s) 579, 656, 1062, 1290
Hsp92II CATG 4 cut(s) 502, 511, 901, 1222
HspAI GCGC 2 cut(s) 52, 63
Ksp22I TGATCA 1 cut(s) 1191
KspAI GTTAAC 1 cut(s) 577
Kzo9I GATC 9 cut(s) 118, 280, 751, 759, 1085, 1149, 1191, 1301, 1441
LguI GCTCTTC 1 cut(s) 519
LmnI GCTCC 6 cut(s) 37, 337, 352, 695, 1262, 1423
Lsp1109I GCAGC 3 cut(s) 205, 331, 355
LweI GCATC 5 cut(s) 91, 442, 705, 730, 1095
MaeI CTAG 2 cut(s) 324, 531
MaeII ACGT 4 cut(s) 579, 656, 1062, 1290
MalI GATC 9 cut(s) 120, 282, 753, 761, 1087, 1151, 1193, 1303, 1443
MbiI CCGCTC 4 cut(s) 6, 60, 726, 1116
MboI GATC 9 cut(s) 118, 280, 751, 759, 1085, 1149, 1191, 1301, 1441
MboII GAAGA 8 cut(s) 229, 232, 536, 646, 918, 926, 1184, 1337
MflI RGATCY 2 cut(s) 280, 751
MhlI GDGCHC 3 cut(s) 160, 433, 856
MlsI TGGCCA 2 cut(s) 652, 1363
MluCI AATT 6 cut(s) 484, 638, 874, 1195, 1348, 1398
MluNI TGGCCA 2 cut(s) 652, 1363
MlyI GAGTC 1 cut(s) 1174
Mox20I TGGCCA 2 cut(s) 652, 1363
MroXI GAANNNNTTC 1 cut(s) 638
MscI TGGCCA 2 cut(s) 652, 1363
MseI TTAA 5 cut(s) 576, 836, 1023, 1344, 1397
Msp20I TGGCCA 2 cut(s) 652, 1363
MspA1I CMGCKG 1 cut(s) 667
MspCI CTTAAG 1 cut(s) 835
Mva1269I GAATGC 1 cut(s) 409
MwoI GCNNNNNNNGC 5 cut(s) 60, 341, 350, 704, 1254
NdeII GATC 9 cut(s) 118, 280, 751, 759, 1085, 1149, 1191, 1301, 1441
NlaIII CATG 4 cut(s) 502, 511, 901, 1222
NlaIV GGNNCC 1 cut(s) 339
NmeAIII GCCGAG 1 cut(s) 835
NspV TTCGAA 1 cut(s) 107
PagI TCATGA 3 cut(s) 507, 897, 1218
PceI AGGCCT 1 cut(s) 1020
PciSI GCTCTTC 1 cut(s) 519
PcsI WCGNNNNNNNCGW 1 cut(s) 1068
PctI GAATGC 1 cut(s) 409
PdmI GAANNNNTTC 1 cut(s) 638
PfeI GAWTC 1 cut(s) 382
PflFI GACNNNGTC 1 cut(s) 1094
PflMI CCANNNNNTGG 1 cut(s) 926
PkrI GCNGC 4 cut(s) 62, 220, 346, 370
PleI GAGTC 1 cut(s) 1173
PpsI GAGTC 1 cut(s) 1173
Ppu21I YACGTR 1 cut(s) 1063
Psp124BI GAGCTC 2 cut(s) 433, 856
Psp1406I AACGTT 2 cut(s) 579, 656
PspFI CCCAGC 1 cut(s) 371
PspN4I GGNNCC 1 cut(s) 339
PspPI GGNCC 1 cut(s) 374
PsuI RGATCY 2 cut(s) 280, 751
PsyI GACNNNGTC 1 cut(s) 1094
PvuII CAGCTG 1 cut(s) 667
RsaI GTAC 3 cut(s) 10, 328, 671
RsaNI GTAC 3 cut(s) 9, 327, 670
SacI GAGCTC 2 cut(s) 433, 856
SapI GCTCTTC 1 cut(s) 519
SaqAI TTAA 5 cut(s) 576, 836, 1023, 1344, 1397
SatI GCNGC 4 cut(s) 61, 219, 345, 369
Sau3AI GATC 9 cut(s) 118, 280, 751, 759, 1085, 1149, 1191, 1301, 1441
Sau96I GGNCC 1 cut(s) 374
ScaI AGTACT 1 cut(s) 328
SchI GAGTC 1 cut(s) 1174
SduI GDGCHC 3 cut(s) 160, 433, 856
SfaNI GCATC 5 cut(s) 91, 442, 705, 730, 1095
SfuI TTCGAA 1 cut(s) 107
SmlI CTYRAG 3 cut(s) 269, 458, 835
SmoI CTYRAG 3 cut(s) 269, 458, 835
Sse9I AATT 6 cut(s) 484, 638, 874, 1195, 1348, 1398
SseBI AGGCCT 1 cut(s) 1020
SsiI CCGC 8 cut(s) 6, 35, 60, 335, 447, 726, 1116, 1248
SspMI CTAG 2 cut(s) 324, 531
SstI GAGCTC 2 cut(s) 433, 856
StuI AGGCCT 1 cut(s) 1020
StyI CCWWGG 2 cut(s) 530, 1015
TaaI ACNGT 4 cut(s) 13, 259, 394, 769
TaiI ACGT 4 cut(s) 582, 659, 1065, 1293
TaqI TCGA 4 cut(s) 107, 861, 972, 987
TaqII GACCGA 2 cut(s) 441, 1154
TasI AATT 6 cut(s) 484, 638, 874, 1195, 1348, 1398
TatI WGTACW 2 cut(s) 326, 669
TauI GCSGC 1 cut(s) 63
TfiI GAWTC 1 cut(s) 382
Tru1I TTAA 5 cut(s) 576, 836, 1023, 1344, 1397
Tru9I TTAA 5 cut(s) 576, 836, 1023, 1344, 1397
TscAI CASTG 3 cut(s) 940, 1159, 1194
TseI GCWGC 3 cut(s) 218, 344, 368
TspDTI ATGAA 9 cut(s) 496, 524, 807, 886, 914, 1207, 1235, 1251, 1338
TspGWI ACGGA 1 cut(s) 693
TspRI CASTG 3 cut(s) 940, 1159, 1194
Tth111I GACNNNGTC 1 cut(s) 1094
Van91I CCANNNNNTGG 1 cut(s) 926
Vha464I CTTAAG 1 cut(s) 835
XapI RAATTY 2 cut(s) 638, 1348
XmaJI CCTAGG 1 cut(s) 530
XmnI GAANNNNTTC 1 cut(s) 638
XspI CTAG 2 cut(s) 324, 531
ZrmI AGTACT 1 cut(s) 328
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.