Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0008547

Physical Location & Seq

Genomic Coordinates Forward (+)

17169994 .. 17177514

Gene Structure 7521 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G187400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 567 bp

ATGGACGAGATTGAAGCTGAAGAACAGCCTGAGCGTTATTCGGTTTCTGATGTGTCTGTCTTTGTGAAGGATGGAAAGGTCGTTGATACATCAGAAGGTGTAGATCCACCTAGTTTGGCCACTAAAGTTGCTAGGGTTGTTGGGTCAGTTAAGGCTGGAGAACCTGCTGCTCCTGCCAGCCTTGACACAGTCCAAGAGTTAGCAAAAGAAACTGGATCTTCTAAGGAGCAAATTCAAGCTCAAAATGGCCTTGATGATGCCTTGAAAAGGCGACTGCAGAAGCTGATTGACTCTAATCGAGTCATGCTTTTCATGAAAGGAACCCCTGAGGAGCCCAAATGTAGATTTAGCAAAATGGCTGTTAACATTTTAAAGAAACATAAGGTCGAATTTGGAAGTTTCGATCTTCTTACGGACAATGAAGTCCTGGAGGGGATACAGAAGTATTCTAACTGGTCTCTATTACCACAGATTTACTTCCAAGGGAGAGCTCGTGGTTTCCGTCACATAGGAACCTTAATGAAAGGTTGCCCAAGTGAAAGCACAAGAAAAGAATTTTTTTATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006810 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0009266 GO:0009408 GO:0009628 GO:0009914 GO:0009926 GO:0009987 GO:0010817 GO:0033554 GO:0044237 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0051716 GO:0051726 GO:0060918 GO:0065007 GO:0065008 GO:0072593

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glutaredoxin Thioredoxin

Protein Analysis

189

Amino Acids

20.99

Weight (kDa)

6.19

Isoelectric Point (pI)

45.96

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008547)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G04950
fragaria_vesca	FvH4_3g09370
malus_domestica	MD00G1095700.v1.1 MD05G1313900.v1.1
prunus_persica	Prupe.1G187000_v2.0.a1 Prupe.1G187000_v2.0.a1 Prupe.1G187400_v2.0.a1 Prupe.4G042200_v2.0.a1 Prupe.4G045800_v2.0.a1
pyrus_communis	pycom05g29170 pycom10g17420 pycom10g24760
rosa_chinensis	RchiOBHm_Chr5g0008221
rosa_laevigata	RLG00000031550
rosa_multiflora	Rmu_co8473947.1_g000001 Rmu_sc0001626.1_g000022
rosa_roxburghii	Rroxscaffold_1G00068260
rosa_rugosa	Rorug04G0434500
rosa_samantha	Rh5AG062800 Rh5BG059100 Rh5CG069700 Rh5DG058700
rosa_wichuraiana	Rw5G005820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	422
Acc36I	ACCTGC	1 cut(s)	172
AclWI	GGATC	2 cut(s)	98, 223
AcoI	YGGCCR	1 cut(s)	117
AcsI	RAATTY	3 cut(s)	231, 389, 554
AcuI	CTGAAG	1 cut(s)	39
AfiI	CCNNNNNNNGG	1 cut(s)	267
AgsI	TTSAA	3 cut(s)	14, 236, 265
AjnI	CCWGG	1 cut(s)	426
AluBI	AGCT	4 cut(s)	17, 239, 283, 491
AluI	AGCT	4 cut(s)	17, 239, 283, 491
Alw21I	GWGCWC	1 cut(s)	493
Alw26I	GTCTC	1 cut(s)	462
AlwI	GGATC	2 cut(s)	98, 223
AlwNI	CAGNNNCTG	1 cut(s)	283
AoxI	GGCC	2 cut(s)	117, 247
ApeKI	GCWGC	1 cut(s)	167
ApoI	RAATTY	3 cut(s)	231, 389, 554
AxyI	CCTNAGG	1 cut(s)	327
BaeI	ACNNNNGTAYC	2 cut(s)	428, 461
BalI	TGGCCA	1 cut(s)	119
BanII	GRGCYC	2 cut(s)	336, 493
BauI	CACGAG	1 cut(s)	492
Bbv12I	GWGCWC	1 cut(s)	493
BbvI	GCAGC	1 cut(s)	154
BccI	CCATC	1 cut(s)	65
BciT130I	CCWGG	1 cut(s)	428
BciVI	GTATCC	1 cut(s)	429
BcoDI	GTCTC	1 cut(s)	462
BfaI	CTAG	2 cut(s)	111, 132
BfmI	CTRYAG	1 cut(s)	275
BfuAI	ACCTGC	1 cut(s)	172
BfuI	GTATCC	1 cut(s)	429
BisI	GCNGC	1 cut(s)	168
BlsI	GCNGC	1 cut(s)	169
Bme1390I	CCNGG	1 cut(s)	428
BmiI	GGNNCC	3 cut(s)	322, 333, 514
BmrFI	CCNGG	1 cut(s)	428
BmsI	GCATC	1 cut(s)	247
BpmI	CTGGAG	2 cut(s)	177, 449
Bpu10I	CCTNAGC	1 cut(s)	30
BsaI	GGTCTC	1 cut(s)	462
BsaJI	CCNNGG	1 cut(s)	481
BsaXI	ACNNNNNCTCC	2 cut(s)	478, 508
Bsc4I	CCNNNNNNNGG	1 cut(s)	267
Bse1I	ACTGG	2 cut(s)	217, 458
Bse21I	CCTNAGG	1 cut(s)	327
BseBI	CCWGG	1 cut(s)	428
BseDI	CCNNGG	1 cut(s)	481
BseGI	GGATG	1 cut(s)	76
BseLI	CCNNNNNNNGG	1 cut(s)	267
BseMII	CTCAG	2 cut(s)	21, 318
BseNI	ACTGG	2 cut(s)	217, 458
BseRI	GAGGAG	1 cut(s)	344
BseXI	GCAGC	1 cut(s)	154
BshFI	GGCC	2 cut(s)	119, 249
BsiHKAI	GWGCWC	1 cut(s)	493
BslI	CCNNNNNNNGG	1 cut(s)	267
BsmAI	GTCTC	1 cut(s)	462
BsnI	GGCC	2 cut(s)	119, 249
Bso31I	GGTCTC	1 cut(s)	462
Bsp1286I	GDGCHC	2 cut(s)	336, 493
Bsp143I	GATC	3 cut(s)	103, 215, 403
BspANI	GGCC	2 cut(s)	119, 249
BspCNI	CTCAG	2 cut(s)	22, 319
BspHI	TCATGA	1 cut(s)	312
BspLI	GGNNCC	3 cut(s)	322, 333, 514
BspMAI	CTGCAG	1 cut(s)	279
BspMI	ACCTGC	1 cut(s)	172
BspPI	GGATC	2 cut(s)	98, 223
BspTNI	GGTCTC	1 cut(s)	462
BsrI	ACTGG	2 cut(s)	217, 458
BssECI	CCNNGG	1 cut(s)	481
BssMI	GATC	3 cut(s)	103, 215, 403
BssSI	CACGAG	1 cut(s)	492
BssT1I	CCWWGG	1 cut(s)	481
Bst2BI	CACGAG	1 cut(s)	492
Bst2UI	CCWGG	1 cut(s)	428
Bst4CI	ACNGT	1 cut(s)	190
BstC8I	GCNNGC	1 cut(s)	178
BstDEI	CTNAG	3 cut(s)	30, 222, 327
BstENI	CCTNNNNNAGG	1 cut(s)	265
BstF5I	GGATG	1 cut(s)	76
BstKTI	GATC	3 cut(s)	106, 218, 406
BstMAI	GTCTC	1 cut(s)	462
BstMBI	GATC	3 cut(s)	103, 215, 403
BstMWI	GCNNNNNNNGC	1 cut(s)	173
BstNI	CCWGG	1 cut(s)	428
BstSCI	CCNGG	1 cut(s)	426
BstSFI	CTRYAG	1 cut(s)	275
BstV1I	GCAGC	1 cut(s)	154
BstX2I	RGATCY	2 cut(s)	103, 215
BstYI	RGATCY	2 cut(s)	103, 215
Bsu36I	CCTNAGG	1 cut(s)	327
BsuI	GTATCC	1 cut(s)	429
BsuRI	GGCC	2 cut(s)	119, 249
BtsCI	GGATG	1 cut(s)	76
BveI	ACCTGC	1 cut(s)	172
Cac8I	GCNNGC	1 cut(s)	178
CaiI	CAGNNNCTG	1 cut(s)	283
CciI	TCATGA	1 cut(s)	312
CspCI	CAANNNNNGTGG	4 cut(s)	96, 109, 131, 144
CviAII	CATG	2 cut(s)	304, 313
DdeI	CTNAG	3 cut(s)	30, 222, 327
DpnI	GATC	3 cut(s)	105, 217, 405
DpnII	GATC	3 cut(s)	103, 215, 403
DraI	TTTAAA	1 cut(s)	372
DrdI	GACNNNNNNGTC	1 cut(s)	422
DseDI	GACNNNNNNGTC	1 cut(s)	422
EaeI	YGGCCR	1 cut(s)	117
Ecl136II	GAGCTC	1 cut(s)	491
Eco130I	CCWWGG	1 cut(s)	481
Eco24I	GRGCYC	2 cut(s)	336, 493
Eco31I	GGTCTC	1 cut(s)	462
Eco53kI	GAGCTC	1 cut(s)	491
Eco57I	CTGAAG	1 cut(s)	39
Eco81I	CCTNAGG	1 cut(s)	327
EcoICRI	GAGCTC	1 cut(s)	491
EcoNI	CCTNNNNNAGG	1 cut(s)	265
EcoRII	CCWGG	1 cut(s)	426
EcoT14I	CCWWGG	1 cut(s)	481
EcoT38I	GRGCYC	2 cut(s)	336, 493
ErhI	CCWWGG	1 cut(s)	481
FaeI	CATG	2 cut(s)	307, 316
FaiI	YATR	4 cut(s)	305, 314, 381, 509
FatI	CATG	2 cut(s)	303, 312
Fnu4HI	GCNGC	1 cut(s)	168
FokI	GGATG	1 cut(s)	83
FriOI	GRGCYC	2 cut(s)	336, 493
Fsp4HI	GCNGC	1 cut(s)	168
FspBI	CTAG	2 cut(s)	111, 132
GluI	GCNGC	1 cut(s)	168
GsuI	CTGGAG	2 cut(s)	177, 449
HaeIII	GGCC	2 cut(s)	119, 249
Hin1II	CATG	2 cut(s)	307, 316
HincII	GTYRAC	1 cut(s)	364
HindII	GTYRAC	1 cut(s)	364
HinfI	GANTC	2 cut(s)	290, 300
HpaI	GTTAAC	1 cut(s)	364
Hpy166II	GTNNAC	1 cut(s)	364
Hpy188I	TCNGA	2 cut(s)	49, 94
Hpy188III	TCNNGA	1 cut(s)	313
Hpy8I	GTNNAC	1 cut(s)	364
HpyAV	CCTTC	2 cut(s)	61, 89
HpyCH4III	ACNGT	1 cut(s)	190
HpyCH4V	TGCA	1 cut(s)	277
HpyF10VI	GCNNNNNNNGC	1 cut(s)	173
HpyF3I	CTNAG	3 cut(s)	30, 222, 327
Hsp92II	CATG	2 cut(s)	307, 316
KspAI	GTTAAC	1 cut(s)	364
Kzo9I	GATC	3 cut(s)	103, 215, 403
LmnI	GCTCC	3 cut(s)	175, 226, 331
Lsp1109I	GCAGC	1 cut(s)	154
LweI	GCATC	1 cut(s)	247
MaeI	CTAG	2 cut(s)	111, 132
MaeIII	GTNAC	1 cut(s)	503
MalI	GATC	3 cut(s)	105, 217, 405
MboI	GATC	3 cut(s)	103, 215, 403
MboII	GAAGA	3 cut(s)	32, 210, 398
MflI	RGATCY	2 cut(s)	103, 215
MhlI	GDGCHC	2 cut(s)	336, 493
MlsI	TGGCCA	1 cut(s)	119
MluCI	AATT	3 cut(s)	231, 389, 554
MluNI	TGGCCA	1 cut(s)	119
MlyI	GAGTC	2 cut(s)	284, 309
MnlI	CCTC	2 cut(s)	322, 424
Mox20I	TGGCCA	1 cut(s)	119
MscI	TGGCCA	1 cut(s)	119
MseI	TTAA	4 cut(s)	150, 363, 371, 518
Msp20I	TGGCCA	1 cut(s)	119
MspR9I	CCNGG	1 cut(s)	428
MvaI	CCWGG	1 cut(s)	428
MwoI	GCNNNNNNNGC	1 cut(s)	173
NdeII	GATC	3 cut(s)	103, 215, 403
NlaIII	CATG	2 cut(s)	307, 316
NlaIV	GGNNCC	3 cut(s)	322, 333, 514
NmuCI	GTSAC	1 cut(s)	503
PagI	TCATGA	1 cut(s)	312
PcsI	WCGNNNNNNNCGW	1 cut(s)	499
PflFI	GACNNNGTC	1 cut(s)	188
PfoI	TCCNGGA	1 cut(s)	426
PkrI	GCNGC	1 cut(s)	169
PleI	GAGTC	2 cut(s)	284, 308
PpsI	GAGTC	2 cut(s)	284, 308
Psp124BI	GAGCTC	1 cut(s)	493
Psp6I	CCWGG	1 cut(s)	426
PspGI	CCWGG	1 cut(s)	426
PspN4I	GGNNCC	3 cut(s)	322, 333, 514
PstI	CTGCAG	1 cut(s)	279
PstNI	CAGNNNCTG	1 cut(s)	283
PsuI	RGATCY	2 cut(s)	103, 215
PsyI	GACNNNGTC	1 cut(s)	188
SacI	GAGCTC	1 cut(s)	493
SaqAI	TTAA	4 cut(s)	150, 363, 371, 518
SatI	GCNGC	1 cut(s)	168
Sau3AI	GATC	3 cut(s)	103, 215, 403
SchI	GAGTC	2 cut(s)	284, 309
ScrFI	CCNGG	1 cut(s)	428
SduI	GDGCHC	2 cut(s)	336, 493
SfaNI	GCATC	1 cut(s)	247
SfcI	CTRYAG	1 cut(s)	275
Sse9I	AATT	3 cut(s)	231, 389, 554
SspMI	CTAG	2 cut(s)	111, 132
SstI	GAGCTC	1 cut(s)	493
StyD4I	CCNGG	1 cut(s)	426
StyI	CCWWGG	1 cut(s)	481
TaaI	ACNGT	1 cut(s)	190
TaqI	TCGA	3 cut(s)	298, 387, 402
TasI	AATT	3 cut(s)	231, 389, 554
Tru1I	TTAA	4 cut(s)	150, 363, 371, 518
Tru9I	TTAA	4 cut(s)	150, 363, 371, 518
TseFI	GTSAC	1 cut(s)	503
TseI	GCWGC	1 cut(s)	167
Tsp45I	GTSAC	1 cut(s)	503
TspDTI	ATGAA	4 cut(s)	301, 329, 435, 536
TspGWI	ACGGA	2 cut(s)	428, 491
Tth111I	GACNNNGTC	1 cut(s)	188
XagI	CCTNNNNNAGG	1 cut(s)	265
XapI	RAATTY	3 cut(s)	231, 389, 554
XspI	CTAG	2 cut(s)	111, 132

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.