Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8473947.1

Orthogroup ID

OG0008547

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 1472

Gene Structure 1472 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8473947.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1221 bp

gatggtaagattgctgataaattggaaggtgcagatccatctagtttggccaataaagttgctaaggttgctgggtcagttaaccctggagaacctgcagctcctgccagccttgggatggctgctggtgcgactatccttgaaaccattaaagagttggcaaaagaaaatgggtcttcccaggaaaagattggagccagtgatacattgaaaaagcggctgcagcagctgattgaatctaatccaatcatgcttttcatgaaaggaaaccccgaagagcccaaatgtggattcagccaaaaagttgtcgacattttgaaggaagagaaggtcaaatttggaagtttcgatattctatcagacaatgaagttagggaaggtttaaagaagttctctaactggccaacatttcctcagctttactgcaaaggggagcttcttggtgggtgtgacattgcaatttcaatgcgcgaaagtggtgaactaaaggaagttttcagagaccatggtatcgatacatttgattcttctggggcaaaagtgactgaagctggaagtggaaaaggtggaacctcagcagctaccggtttgagttcaactcttacctctcggcttgaaagcctcattcattcaagcccagttatgctgtttatgaagggaaaaccggaagaacccaagtgtgggttcagccggaaggtagttgatatccttgcacaagaaaaggtggagtttcagacctttgatattctttctgatgaggaagttcgtcaagggctcaaagttcattcaaactggtccagttatcctcaactatatattaagggtgaacttattggtggatcagacattgtgttggagatgcagaaaagtggagaactcaaaaaggttttggcagagaaagggattgttcagaaagatactctggaagatcgtttaaagaaattgatttcttcttcaccagtgatgctcttcatgaagggcacaccggatgctccgaaatgtggttttagttccaaagtagttaatgcccttacagaagatggtgttagttttgggtcatttgatattttaactgatgaggaggtgaggcaggggcttaaagtcttctcaaactggccaaccttccctcagctgtattacaaaggtgagctaataggaggaagcgatattatactggaactgaagaacaatggagagcttaaggctactctgacggagtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006810 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0009266 GO:0009408 GO:0009628 GO:0009914 GO:0009926 GO:0009987 GO:0010817 GO:0033554 GO:0044237 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0051716 GO:0051726 GO:0060918 GO:0065007 GO:0065008 GO:0072593

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glutaredoxin Thioredoxin

Protein Analysis

406

Amino Acids

43.98

Weight (kDa)

5.33

Isoelectric Point (pI)

31.45

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008547)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G04950
fragaria_vesca	FvH4_3g09370
malus_domestica	MD00G1095700.v1.1 MD05G1313900.v1.1
prunus_persica	Prupe.1G187000_v2.0.a1 Prupe.1G187000_v2.0.a1 Prupe.1G187400_v2.0.a1 Prupe.4G042200_v2.0.a1 Prupe.4G045800_v2.0.a1
pyrus_communis	pycom05g29170 pycom10g17420 pycom10g24760
rosa_chinensis	RchiOBHm_Chr5g0008221
rosa_laevigata	RLG00000031550
rosa_multiflora	Rmu_co8473947.1_g000001 Rmu_sc0001626.1_g000022
rosa_roxburghii	Rroxscaffold_1G00068260
rosa_rugosa	Rorug04G0434500
rosa_samantha	Rh5AG062800 Rh5BG059100 Rh5CG069700 Rh5DG058700
rosa_wichuraiana	Rw5G005820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	103
AccI	GTMKAC	1 cut(s)	309
AccII	CGCG	1 cut(s)	471
AciI	CCGC	1 cut(s)	217
AclWI	GGATC	2 cut(s)	29, 847
AcoI	YGGCCR	3 cut(s)	48, 401, 1115
AcsI	RAATTY	1 cut(s)	335
AcuI	CTGAAG	2 cut(s)	567, 1202
AfiI	CCNNNNNNNGG	6 cut(s)	114, 118, 287, 680, 681, 1001
AflII	CTTAAG	1 cut(s)	1199
AgeI	ACCGGT	1 cut(s)	584
AgsI	TTSAA	9 cut(s)	143, 211, 236, 319, 465, 597, 617, 633, 789
AjnI	CCWGG	2 cut(s)	85, 180
AjuI	GAANNNNNNNTTGG	4 cut(s)	275, 307, 668, 700
AluBI	AGCT	9 cut(s)	101, 229, 418, 436, 551, 581, 1132, 1150, 1198
AluI	AGCT	9 cut(s)	101, 229, 418, 436, 551, 581, 1132, 1150, 1198
Alw26I	GTCTC	1 cut(s)	495
AlwI	GGATC	2 cut(s)	29, 847
AlwNI	CAGNNNCTG	2 cut(s)	104, 229
AoxI	GGCC	3 cut(s)	48, 401, 1115
ApeKI	GCWGC	6 cut(s)	98, 122, 220, 223, 226, 578
ApoI	RAATTY	1 cut(s)	335
AsiGI	ACCGGT	1 cut(s)	584
AspLEI	GCGC	1 cut(s)	471
AspS9I	GGNCC	1 cut(s)	795
AsuHPI	GGTGA	5 cut(s)	491, 836, 948, 1096, 1157
AvaII	GGWCC	1 cut(s)	795
BaeGI	GKGCMC	1 cut(s)	983
BaeI	ACNNNNGTAYC	2 cut(s)	493, 526
BalI	TGGCCA	3 cut(s)	50, 403, 1117
BanII	GRGCYC	2 cut(s)	282, 777
BbsI	GAAGAC	2 cut(s)	168, 1096
BbvCI	CCTCAGC	3 cut(s)	414, 574, 1128
BbvI	GCAGC	6 cut(s)	109, 110, 207, 235, 238, 590
BccI	CCATC	3 cut(s)	46, 112, 1034
BciT130I	CCWGG	2 cut(s)	87, 182
BcoDI	GTCTC	1 cut(s)	495
BfaI	CTAG	1 cut(s)	42
BfmI	CTRYAG	2 cut(s)	96, 221
BfrI	CTTAAG	1 cut(s)	1199
BfuAI	ACCTGC	1 cut(s)	103
BisI	GCNGC	7 cut(s)	99, 123, 218, 221, 224, 227, 579
BlsI	GCNGC	7 cut(s)	100, 124, 219, 222, 225, 228, 580
Bme1390I	CCNGG	2 cut(s)	87, 182
Bme18I	GGWCC	1 cut(s)	795
BmgT120I	GGNCC	1 cut(s)	795
BmiI	GGNNCC	2 cut(s)	196, 571
BmrFI	CCNGG	2 cut(s)	87, 182
BmrI	ACTGGG	1 cut(s)	632
BmsI	GCATC	3 cut(s)	849, 954, 979
BmuI	ACTGGG	1 cut(s)	632
BpiI	GAAGAC	2 cut(s)	168, 1096
BplI	GAGNNNNNCTC	2 cut(s)	583, 615
BpmI	CTGGAG	1 cut(s)	108
Bpu10I	CCTNAGC	4 cut(s)	63, 414, 574, 1128
Bsa29I	ATCGAT	1 cut(s)	513
BsaI	GGTCTC	1 cut(s)	495
BsaJI	CCNNGG	4 cut(s)	85, 112, 180, 505
BsaWI	WCCGGW	3 cut(s)	584, 664, 985
Bsc4I	CCNNNNNNNGG	6 cut(s)	114, 118, 287, 680, 681, 1001
Bse118I	RCCGGY	1 cut(s)	584
Bse1I	ACTGG	8 cut(s)	198, 404, 638, 797, 798, 959, 1118, 1179
Bse3DI	GCAATG	1 cut(s)	453
BseBI	CCWGG	2 cut(s)	87, 182
BseCI	ATCGAT	1 cut(s)	513
BseDI	CCNNGG	4 cut(s)	85, 112, 180, 505
BseGI	GGATG	2 cut(s)	123, 994
BseLI	CCNNNNNNNGG	6 cut(s)	114, 118, 287, 680, 681, 1001
BseMI	GCAATG	1 cut(s)	453
BseMII	CTCAG	3 cut(s)	428, 588, 1142
BseNI	ACTGG	8 cut(s)	198, 404, 638, 797, 798, 959, 1118, 1179
BseRI	GAGGAG	1 cut(s)	1094
BseSI	GKGCMC	1 cut(s)	983
BseXI	GCAGC	6 cut(s)	109, 110, 207, 235, 238, 590
BseYI	CCCAGC	1 cut(s)	71
BsgI	GTGCAG	1 cut(s)	51
Bsh1236I	CGCG	1 cut(s)	471
BshFI	GGCC	3 cut(s)	50, 403, 1117
BshTI	ACCGGT	1 cut(s)	584
BshVI	ATCGAT	1 cut(s)	513
BsiSI	CCGG	4 cut(s)	585, 665, 691, 986
BslI	CCNNNNNNNGG	6 cut(s)	114, 118, 287, 680, 681, 1001
BsmAI	GTCTC	1 cut(s)	495
BsnI	GGCC	3 cut(s)	50, 403, 1117
Bso31I	GGTCTC	1 cut(s)	495
Bsp1286I	GDGCHC	3 cut(s)	282, 777, 983
Bsp143I	GATC	3 cut(s)	34, 839, 928
Bsp19I	CCATGG	1 cut(s)	505
BspACI	CCGC	1 cut(s)	217
BspANI	GGCC	3 cut(s)	50, 403, 1117
BspCNI	CTCAG	3 cut(s)	427, 587, 1141
BspDI	ATCGAT	1 cut(s)	513
BspFNI	CGCG	1 cut(s)	471
BspHI	TCATGA	2 cut(s)	258, 972
BspLI	GGNNCC	2 cut(s)	196, 571
BspMAI	CTGCAG	2 cut(s)	100, 225
BspMI	ACCTGC	1 cut(s)	103
BspPI	GGATC	2 cut(s)	29, 847
BspQI	GCTCTTC	2 cut(s)	270, 974
BspTI	CTTAAG	1 cut(s)	1199
BspTNI	GGTCTC	1 cut(s)	495
BsrDI	GCAATG	1 cut(s)	453
BsrFI	RCCGGY	1 cut(s)	584
BsrI	ACTGG	8 cut(s)	198, 404, 638, 797, 798, 959, 1118, 1179
BssAI	RCCGGY	1 cut(s)	584
BssECI	CCNNGG	4 cut(s)	85, 112, 180, 505
BssMI	GATC	3 cut(s)	34, 839, 928
BssT1I	CCWWGG	2 cut(s)	112, 505
Bst2UI	CCWGG	2 cut(s)	87, 182
Bst6I	CTCTTC	3 cut(s)	270, 318, 974
BstAFI	CTTAAG	1 cut(s)	1199
BstAPI	GCANNNNNTGC	1 cut(s)	104
BstC8I	GCNNGC	1 cut(s)	109
BstDEI	CTNAG	4 cut(s)	63, 414, 574, 1128
BstDSI	CCRYGG	1 cut(s)	505
BstF5I	GGATG	2 cut(s)	123, 994
BstFNI	CGCG	1 cut(s)	471
BstHHI	GCGC	1 cut(s)	471
BstKTI	GATC	3 cut(s)	37, 842, 931
BstMAI	GTCTC	1 cut(s)	495
BstMBI	GATC	3 cut(s)	34, 839, 928
BstMWI	GCNNNNNNNGC	5 cut(s)	68, 104, 128, 223, 226
BstNI	CCWGG	2 cut(s)	87, 182
BstSCI	CCNGG	2 cut(s)	85, 180
BstSFI	CTRYAG	2 cut(s)	96, 221
BstSLI	GKGCMC	1 cut(s)	983
BstUI	CGCG	1 cut(s)	471
BstV1I	GCAGC	6 cut(s)	109, 110, 207, 235, 238, 590
BstV2I	GAAGAC	2 cut(s)	168, 1096
BstX2I	RGATCY	1 cut(s)	34
BstYI	RGATCY	1 cut(s)	34
Bsu15I	ATCGAT	1 cut(s)	513
BsuRI	GGCC	3 cut(s)	50, 403, 1117
BsuTUI	ATCGAT	1 cut(s)	513
BtgI	CCRYGG	1 cut(s)	505
BtsCI	GGATG	2 cut(s)	123, 994
BtsIMutI	CAGTG	2 cut(s)	205, 966
BveI	ACCTGC	1 cut(s)	103
Cac8I	GCNNGC	1 cut(s)	109
CaiI	CAGNNNCTG	2 cut(s)	104, 229
CciI	TCATGA	2 cut(s)	258, 972
CfoI	GCGC	1 cut(s)	471
Cfr10I	RCCGGY	1 cut(s)	584
Cfr13I	GGNCC	1 cut(s)	795
ClaI	ATCGAT	1 cut(s)	513
CspAI	ACCGGT	1 cut(s)	584
CviAII	CATG	4 cut(s)	250, 259, 506, 973
DdeI	CTNAG	4 cut(s)	63, 414, 574, 1128
DpnI	GATC	3 cut(s)	36, 841, 930
DpnII	GATC	3 cut(s)	34, 839, 928
DraI	TTTAAA	2 cut(s)	384, 936
EaeI	YGGCCR	3 cut(s)	48, 401, 1115
Eam1104I	CTCTTC	3 cut(s)	270, 318, 974
EarI	CTCTTC	3 cut(s)	270, 318, 974
Eco130I	CCWWGG	2 cut(s)	112, 505
Eco24I	GRGCYC	2 cut(s)	282, 777
Eco31I	GGTCTC	1 cut(s)	495
Eco32I	GATATC	1 cut(s)	706
Eco47I	GGWCC	1 cut(s)	795
Eco57I	CTGAAG	2 cut(s)	567, 1202
EcoRII	CCWGG	2 cut(s)	85, 180
EcoRV	GATATC	1 cut(s)	706
EcoT14I	CCWWGG	2 cut(s)	112, 505
EcoT38I	GRGCYC	2 cut(s)	282, 777
ErhI	CCWWGG	2 cut(s)	112, 505
FaeI	CATG	4 cut(s)	253, 262, 509, 976
FaiI	YATR	9 cut(s)	251, 260, 507, 644, 653, 814, 816, 974, 1172
FalI	AAGNNNNNCTT	2 cut(s)	420, 452
FatI	CATG	4 cut(s)	249, 258, 505, 972
FblI	GTMKAC	1 cut(s)	309
Fnu4HI	GCNGC	7 cut(s)	99, 123, 218, 221, 224, 227, 579
FokI	GGATG	2 cut(s)	130, 1001
FriOI	GRGCYC	2 cut(s)	282, 777
Fsp4HI	GCNGC	7 cut(s)	99, 123, 218, 221, 224, 227, 579
FspBI	CTAG	1 cut(s)	42
GlaI	GCGC	1 cut(s)	470
GluI	GCNGC	7 cut(s)	99, 123, 218, 221, 224, 227, 579
GsaI	CCCAGC	1 cut(s)	75
GsuI	CTGGAG	1 cut(s)	108
HaeIII	GGCC	3 cut(s)	50, 403, 1117
HapII	CCGG	4 cut(s)	585, 665, 691, 986
HhaI	GCGC	1 cut(s)	471
Hin1II	CATG	4 cut(s)	253, 262, 509, 976
Hin6I	GCGC	1 cut(s)	469
HinP1I	GCGC	1 cut(s)	469
HincII	GTYRAC	2 cut(s)	82, 310
HindII	GTYRAC	2 cut(s)	82, 310
HinfI	GANTC	3 cut(s)	236, 291, 524
HpaI	GTTAAC	1 cut(s)	82
HpaII	CCGG	4 cut(s)	585, 665, 691, 986
HphI	GGTGA	5 cut(s)	491, 836, 948, 1096, 1157
Hpy166II	GTNNAC	4 cut(s)	82, 310, 482, 827
Hpy188I	TCNGA	8 cut(s)	361, 500, 735, 754, 844, 912, 996, 1212
Hpy188III	TCNNGA	3 cut(s)	259, 923, 973
Hpy8I	GTNNAC	4 cut(s)	82, 310, 482, 827
HpyAV	CCTTC	8 cut(s)	20, 313, 322, 371, 649, 688, 970, 1132
HpyCH4V	TGCA	7 cut(s)	32, 98, 223, 426, 458, 713, 862
HpyF10VI	GCNNNNNNNGC	5 cut(s)	68, 104, 128, 223, 226
HpyF3I	CTNAG	4 cut(s)	63, 414, 574, 1128
Hsp92II	CATG	4 cut(s)	253, 262, 509, 976
HspAI	GCGC	1 cut(s)	469
KspAI	GTTAAC	1 cut(s)	82
Kzo9I	GATC	3 cut(s)	34, 839, 928
LguI	GCTCTTC	2 cut(s)	270, 974
LmnI	GCTCC	4 cut(s)	106, 194, 433, 997
Lsp1109I	GCAGC	6 cut(s)	109, 110, 207, 235, 238, 590
LweI	GCATC	3 cut(s)	849, 954, 979
MaeI	CTAG	1 cut(s)	42
MaeIII	GTNAC	2 cut(s)	449, 541
MalI	GATC	3 cut(s)	36, 841, 930
MboI	GATC	3 cut(s)	34, 839, 928
MflI	RGATCY	1 cut(s)	34
MhlI	GDGCHC	3 cut(s)	282, 777, 983
MlsI	TGGCCA	3 cut(s)	50, 403, 1117
MluCI	AATT	4 cut(s)	20, 335, 459, 941
MluNI	TGGCCA	3 cut(s)	50, 403, 1117
MmeI	TCCRAC	1 cut(s)	834
Mox20I	TGGCCA	3 cut(s)	50, 403, 1117
MscI	TGGCCA	3 cut(s)	50, 403, 1117
MseI	TTAA	9 cut(s)	81, 150, 383, 819, 935, 1023, 1070, 1098, 1200
Msp20I	TGGCCA	3 cut(s)	50, 403, 1117
MspA1I	CMGCKG	2 cut(s)	229, 1132
MspCI	CTTAAG	1 cut(s)	1199
MspI	CCGG	4 cut(s)	585, 665, 691, 986
MspR9I	CCNGG	2 cut(s)	87, 182
MvaI	CCWGG	2 cut(s)	87, 182
MvnI	CGCG	1 cut(s)	471
MwoI	GCNNNNNNNGC	5 cut(s)	68, 104, 128, 223, 226
NcoI	CCATGG	1 cut(s)	505
NdeII	GATC	3 cut(s)	34, 839, 928
NlaIII	CATG	4 cut(s)	253, 262, 509, 976
NlaIV	GGNNCC	2 cut(s)	196, 571
NmeAIII	GCCGAG	1 cut(s)	589
NmuCI	GTSAC	2 cut(s)	449, 541
PagI	TCATGA	2 cut(s)	258, 972
PciSI	GCTCTTC	2 cut(s)	270, 974
PfeI	GAWTC	3 cut(s)	236, 291, 524
PinAI	ACCGGT	1 cut(s)	584
PkrI	GCNGC	7 cut(s)	100, 124, 219, 222, 225, 228, 580
Psp6I	CCWGG	2 cut(s)	85, 180
PspFI	CCCAGC	1 cut(s)	71
PspGI	CCWGG	2 cut(s)	85, 180
PspN4I	GGNNCC	2 cut(s)	196, 571
PspPI	GGNCC	1 cut(s)	795
PstI	CTGCAG	2 cut(s)	100, 225
PstNI	CAGNNNCTG	2 cut(s)	104, 229
PsuI	RGATCY	1 cut(s)	34
PvuII	CAGCTG	2 cut(s)	229, 1132
SalI	GTCGAC	1 cut(s)	308
SapI	GCTCTTC	2 cut(s)	270, 974
SaqAI	TTAA	9 cut(s)	81, 150, 383, 819, 935, 1023, 1070, 1098, 1200
SatI	GCNGC	7 cut(s)	99, 123, 218, 221, 224, 227, 579
Sau3AI	GATC	3 cut(s)	34, 839, 928
Sau96I	GGNCC	1 cut(s)	795
ScrFI	CCNGG	2 cut(s)	87, 182
SduI	GDGCHC	3 cut(s)	282, 777, 983
SfaNI	GCATC	3 cut(s)	849, 954, 979
SfcI	CTRYAG	2 cut(s)	96, 221
SinI	GGWCC	1 cut(s)	795
SmlI	CTYRAG	1 cut(s)	1199
SmoI	CTYRAG	1 cut(s)	1199
Sse9I	AATT	4 cut(s)	20, 335, 459, 941
SsiI	CCGC	1 cut(s)	217
SspMI	CTAG	1 cut(s)	42
StyD4I	CCNGG	2 cut(s)	85, 180
StyI	CCWWGG	2 cut(s)	112, 505
TaqI	TCGA	3 cut(s)	309, 348, 513
TasI	AATT	4 cut(s)	20, 335, 459, 941
TauI	GCSGC	1 cut(s)	220
TfiI	GAWTC	3 cut(s)	236, 291, 524
Tru1I	TTAA	9 cut(s)	81, 150, 383, 819, 935, 1023, 1070, 1098, 1200
Tru9I	TTAA	9 cut(s)	81, 150, 383, 819, 935, 1023, 1070, 1098, 1200
TscAI	CASTG	2 cut(s)	205, 966
TseFI	GTSAC	2 cut(s)	449, 541
TseI	GCWGC	6 cut(s)	98, 122, 220, 223, 226, 578
Tsp45I	GTSAC	2 cut(s)	449, 541
TspDTI	ATGAA	8 cut(s)	247, 275, 381, 617, 668, 773, 961, 989
TspRI	CASTG	2 cut(s)	205, 966
Vha464I	CTTAAG	1 cut(s)	1199
VpaK11BI	GGWCC	1 cut(s)	795
XapI	RAATTY	1 cut(s)	335
XcmI	CCANNNNNNNNNTGG	3 cut(s)	115, 154, 188
XmiI	GTMKAC	1 cut(s)	309
XspI	CTAG	1 cut(s)	42

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.