Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0008547

Physical Location & Seq

Genomic Coordinates Forward (+)

1992465 .. 1994084

Gene Structure 1620 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G042200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 531 bp

ATGGGTGGATCAGTGAAGGTTTCGCAATCCAAGAAGGTGGTCTGGCCCTCGAGTTGTGAGGCTTCGAAGCACATGGACGAGGATGGAAAGGTGGCTGATACATTAGAAGGTGCAGATCCATCTAGTTTGGCTAATAAAGTTGCAGTTGAGCCTGAAGAACCTGCTCCAGAGTTGACAAAAGAAAATGAATCTTCCCAAGAGCAAATTCAAGTGCAAGATGGCCTTGATGATGCCTTGAAAAGGCGGCTGCAACAGCTGATTGAATCCAATCGAGTCATGCTTTTCATGAAAGGAACCCCTGAGGATCCCAAATGTGAATTTAGCAAAATGGCTGTTAACATGTTGAAGATATATGAGGTCGAATTTGGAAGTTTTGATCTTCTCACGGACAATGAAGTTATGGAGGGGATACAAAAGTATTCTAACTGGCCACTATTACCACATATCTACTTTGAAGGGAGGGCTTGTGGTTTTCGTCACATAGGAACTCTAATGAAAGGTTGCCCATCTGATCCAACTGCGTTTGGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006810 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0009266 GO:0009408 GO:0009628 GO:0009914 GO:0009926 GO:0009987 GO:0010817 GO:0033554 GO:0044237 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0051716 GO:0051726 GO:0060918 GO:0065007 GO:0065008 GO:0072593

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glutaredoxin Thioredoxin

Protein Analysis

177

Amino Acids

19.54

Weight (kDa)

4.81

Isoelectric Point (pI)

56.34

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008547)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G04950
fragaria_vesca	FvH4_3g09370
malus_domestica	MD00G1095700.v1.1 MD05G1313900.v1.1
prunus_persica	Prupe.1G187000_v2.0.a1 Prupe.1G187000_v2.0.a1 Prupe.1G187400_v2.0.a1 Prupe.4G042200_v2.0.a1 Prupe.4G045800_v2.0.a1
pyrus_communis	pycom05g29170 pycom10g17420 pycom10g24760
rosa_chinensis	RchiOBHm_Chr5g0008221
rosa_laevigata	RLG00000031550
rosa_multiflora	Rmu_co8473947.1_g000001 Rmu_sc0001626.1_g000022
rosa_roxburghii	Rroxscaffold_1G00068260
rosa_rugosa	Rorug04G0434500
rosa_samantha	Rh5AG062800 Rh5BG059100 Rh5CG069700 Rh5DG058700
rosa_wichuraiana	Rw5G005820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	169
AciI	CCGC	1 cut(s)	244
AclWI	GGATC	5 cut(s)	16, 110, 299, 312, 506
AcoI	YGGCCR	1 cut(s)	428
AcsI	RAATTY	3 cut(s)	204, 317, 362
AcuI	CTGAAG	1 cut(s)	174
AfiI	CCNNNNNNNGG	1 cut(s)	240
AflIII	ACRYGT	1 cut(s)	339
AgsI	TTSAA	5 cut(s)	209, 238, 263, 346, 455
AjuI	GAANNNNNNNTTGG	2 cut(s)	189, 221
AluBI	AGCT	1 cut(s)	256
AluI	AGCT	1 cut(s)	256
AlwI	GGATC	5 cut(s)	16, 110, 299, 312, 506
Ama87I	CYCGRG	1 cut(s)	49
AoxI	GGCC	3 cut(s)	44, 220, 428
ApeKI	GCWGC	1 cut(s)	247
ApoI	RAATTY	3 cut(s)	204, 317, 362
AspS9I	GGNCC	1 cut(s)	45
AsuII	TTCGAA	1 cut(s)	65
AvaI	CYCGRG	1 cut(s)	49
AxyI	CCTNAGG	1 cut(s)	300
BaeI	ACNNNNGTAYC	2 cut(s)	401, 434
BalI	TGGCCA	1 cut(s)	430
BamHI	GGATCC	1 cut(s)	304
BbvI	GCAGC	1 cut(s)	234
BccI	CCATC	4 cut(s)	77, 127, 212, 514
BciVI	GTATCC	1 cut(s)	402
BfaI	CTAG	1 cut(s)	123
BfuAI	ACCTGC	1 cut(s)	169
BfuI	GTATCC	1 cut(s)	402
BisI	GCNGC	2 cut(s)	245, 248
BlsI	GCNGC	2 cut(s)	246, 249
BmeT110I	CYCGRG	1 cut(s)	49
BmgT120I	GGNCC	1 cut(s)	45
BmiI	GGNNCC	2 cut(s)	295, 306
BmsI	GCATC	1 cut(s)	220
BpmI	CTGGAG	1 cut(s)	150
Bpu14I	TTCGAA	1 cut(s)	65
BsaXI	ACNNNNNCTCC	2 cut(s)	451, 481
Bsc4I	CCNNNNNNNGG	1 cut(s)	240
Bse1I	ACTGG	1 cut(s)	431
Bse21I	CCTNAGG	1 cut(s)	300
BseGI	GGATG	1 cut(s)	88
BseLI	CCNNNNNNNGG	1 cut(s)	240
BseMII	CTCAG	1 cut(s)	291
BseNI	ACTGG	1 cut(s)	431
BseXI	GCAGC	1 cut(s)	234
BsgI	GTGCAG	1 cut(s)	132
BshFI	GGCC	3 cut(s)	46, 222, 430
BsiHKCI	CYCGRG	1 cut(s)	49
BslI	CCNNNNNNNGG	1 cut(s)	240
BsnI	GGCC	3 cut(s)	46, 222, 430
BsoBI	CYCGRG	1 cut(s)	49
Bsp119I	TTCGAA	1 cut(s)	65
Bsp143I	GATC	5 cut(s)	8, 115, 304, 376, 511
BspACI	CCGC	1 cut(s)	244
BspANI	GGCC	3 cut(s)	46, 222, 430
BspCNI	CTCAG	1 cut(s)	292
BspHI	TCATGA	1 cut(s)	285
BspLI	GGNNCC	2 cut(s)	295, 306
BspMI	ACCTGC	1 cut(s)	169
BspPI	GGATC	5 cut(s)	16, 110, 299, 312, 506
BspT104I	TTCGAA	1 cut(s)	65
BsrI	ACTGG	1 cut(s)	431
BssMI	GATC	5 cut(s)	8, 115, 304, 376, 511
BstBI	TTCGAA	1 cut(s)	65
BstDEI	CTNAG	1 cut(s)	300
BstENI	CCTNNNNNAGG	1 cut(s)	238
BstF5I	GGATG	1 cut(s)	88
BstKTI	GATC	5 cut(s)	11, 118, 307, 379, 514
BstMBI	GATC	5 cut(s)	8, 115, 304, 376, 511
BstMWI	GCNNNNNNNGC	1 cut(s)	253
BstNSI	RCATGY	1 cut(s)	343
BstV1I	GCAGC	1 cut(s)	234
BstX2I	RGATCY	2 cut(s)	115, 304
BstXI	CCANNNNNNTGG	1 cut(s)	37
BstYI	RGATCY	2 cut(s)	115, 304
Bsu36I	CCTNAGG	1 cut(s)	300
BsuI	GTATCC	1 cut(s)	402
BsuRI	GGCC	3 cut(s)	46, 222, 430
BtsCI	GGATG	1 cut(s)	88
BtsIMutI	CAGTG	1 cut(s)	18
BveI	ACCTGC	1 cut(s)	169
CciI	TCATGA	1 cut(s)	285
Cfr13I	GGNCC	1 cut(s)	45
CviAII	CATG	4 cut(s)	73, 277, 286, 340
DdeI	CTNAG	1 cut(s)	300
DpnI	GATC	5 cut(s)	10, 117, 306, 378, 513
DpnII	GATC	5 cut(s)	8, 115, 304, 376, 511
EaeI	YGGCCR	1 cut(s)	428
Eco57I	CTGAAG	1 cut(s)	174
Eco81I	CCTNAGG	1 cut(s)	300
Eco88I	CYCGRG	1 cut(s)	49
EcoNI	CCTNNNNNAGG	1 cut(s)	238
FaeI	CATG	4 cut(s)	76, 280, 289, 343
FaiI	YATR	9 cut(s)	74, 278, 287, 341, 352, 354, 401, 444, 482
FalI	AAGNNNNNCTT	2 cut(s)	207, 239
FatI	CATG	4 cut(s)	72, 276, 285, 339
Fnu4HI	GCNGC	2 cut(s)	245, 248
FokI	GGATG	1 cut(s)	95
Fsp4HI	GCNGC	2 cut(s)	245, 248
FspBI	CTAG	1 cut(s)	123
GluI	GCNGC	2 cut(s)	245, 248
GsuI	CTGGAG	1 cut(s)	150
HaeIII	GGCC	3 cut(s)	46, 222, 430
Hin1II	CATG	4 cut(s)	76, 280, 289, 343
HincII	GTYRAC	2 cut(s)	174, 337
HindII	GTYRAC	2 cut(s)	174, 337
HinfI	GANTC	3 cut(s)	188, 263, 273
HpaI	GTTAAC	1 cut(s)	337
Hpy166II	GTNNAC	2 cut(s)	174, 337
Hpy188I	TCNGA	1 cut(s)	511
Hpy188III	TCNNGA	2 cut(s)	167, 286
Hpy8I	GTNNAC	2 cut(s)	174, 337
HpyAV	CCTTC	4 cut(s)	10, 28, 101, 449
HpyCH4V	TGCA	4 cut(s)	113, 143, 214, 250
HpyF10VI	GCNNNNNNNGC	1 cut(s)	253
HpyF3I	CTNAG	1 cut(s)	300
Hsp92II	CATG	4 cut(s)	76, 280, 289, 343
KspAI	GTTAAC	1 cut(s)	337
Kzo9I	GATC	5 cut(s)	8, 115, 304, 376, 511
LmnI	GCTCC	1 cut(s)	169
LpnPI	CCDG	6 cut(s)	28, 165, 174, 180, 312, 412
Lsp1109I	GCAGC	1 cut(s)	234
LweI	GCATC	1 cut(s)	220
MaeI	CTAG	1 cut(s)	123
MaeIII	GTNAC	1 cut(s)	476
MalI	GATC	5 cut(s)	10, 117, 306, 378, 513
MboI	GATC	5 cut(s)	8, 115, 304, 376, 511
MboII	GAAGA	4 cut(s)	167, 183, 358, 371
MflI	RGATCY	2 cut(s)	115, 304
MlsI	TGGCCA	1 cut(s)	430
MluCI	AATT	3 cut(s)	204, 317, 362
MluNI	TGGCCA	1 cut(s)	430
MlyI	GAGTC	1 cut(s)	282
MnlI	CCTC	7 cut(s)	52, 58, 73, 295, 349, 397, 453
Mox20I	TGGCCA	1 cut(s)	430
MscI	TGGCCA	1 cut(s)	430
MseI	TTAA	1 cut(s)	336
Msp20I	TGGCCA	1 cut(s)	430
MspA1I	CMGCKG	1 cut(s)	256
MwoI	GCNNNNNNNGC	1 cut(s)	253
NdeII	GATC	5 cut(s)	8, 115, 304, 376, 511
NlaIII	CATG	4 cut(s)	76, 280, 289, 343
NlaIV	GGNNCC	2 cut(s)	295, 306
NmuCI	GTSAC	1 cut(s)	476
NspI	RCATGY	1 cut(s)	343
NspV	TTCGAA	1 cut(s)	65
PaeR7I	CTCGAG	1 cut(s)	49
PagI	TCATGA	1 cut(s)	285
PciI	ACATGT	1 cut(s)	339
PfeI	GAWTC	2 cut(s)	188, 263
PkrI	GCNGC	2 cut(s)	246, 249
PleI	GAGTC	1 cut(s)	281
PpsI	GAGTC	1 cut(s)	281
PscI	ACATGT	1 cut(s)	339
PspN4I	GGNNCC	2 cut(s)	295, 306
PspPI	GGNCC	1 cut(s)	45
PspXI	VCTCGAGB	1 cut(s)	49
PsuI	RGATCY	2 cut(s)	115, 304
PvuII	CAGCTG	1 cut(s)	256
SaqAI	TTAA	1 cut(s)	336
SatI	GCNGC	2 cut(s)	245, 248
Sau3AI	GATC	5 cut(s)	8, 115, 304, 376, 511
Sau96I	GGNCC	1 cut(s)	45
SchI	GAGTC	1 cut(s)	282
SetI	ASST	8 cut(s)	21, 39, 93, 112, 163, 258, 360, 502
SfaNI	GCATC	1 cut(s)	220
Sfr274I	CTCGAG	1 cut(s)	49
SfuI	TTCGAA	1 cut(s)	65
SlaI	CTCGAG	1 cut(s)	49
SmlI	CTYRAG	1 cut(s)	49
SmoI	CTYRAG	1 cut(s)	49
Sse9I	AATT	3 cut(s)	204, 317, 362
SsiI	CCGC	1 cut(s)	244
SspMI	CTAG	1 cut(s)	123
TaqI	TCGA	4 cut(s)	50, 65, 271, 360
TasI	AATT	3 cut(s)	204, 317, 362
TauI	GCSGC	1 cut(s)	247
TfiI	GAWTC	2 cut(s)	188, 263
Tru1I	TTAA	1 cut(s)	336
Tru9I	TTAA	1 cut(s)	336
TscAI	CASTG	1 cut(s)	18
TseFI	GTSAC	1 cut(s)	476
TseI	GCWGC	1 cut(s)	247
Tsp45I	GTSAC	1 cut(s)	476
TspDTI	ATGAA	5 cut(s)	201, 274, 302, 408, 509
TspGWI	ACGGA	1 cut(s)	401
TspRI	CASTG	1 cut(s)	18
XagI	CCTNNNNNAGG	1 cut(s)	238
XapI	RAATTY	3 cut(s)	204, 317, 362
XceI	RCATGY	1 cut(s)	343
XhoI	CTCGAG	1 cut(s)	49
XspI	CTAG	1 cut(s)	123

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.