Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0008547

Physical Location & Seq

Genomic Coordinates Forward (+)

59261754 .. 59264155

Gene Structure 2402 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0434500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 690 bp

ATGATAATTTGCAGATCATCACCAGACCGCCCTCCTCCACTTACATTCTCCATACTCCGCAGATTCTTCTTGCTTGCCTTCCTTGCATGTTCAGGGCAGATATTTGGATTATTTATTGGTATAGACCACAGCTCTCCCACGCTTGGTACCGCCATGCTTAACCTCATTCCTGCATTCACTTTCATACTTGCTCTTATTTTCAGGATGGAAAATGTGTACTGGAGAAGGTTAAATAGTCAAGCCAAAGTTTTGGGGACCATCGTTTCAATTACAGGAGCATTTGTGGTCACATTCTACAAAGCAGATATTTTCACCAGTTCCCTATGGTACATTCTGCAGGCATCGATCCTTCAGAAGTACCCGGCAGTAGTGTTCGTAGTATTTTTCCAATGCTTCTTCGCAACCGTTCAGTCTACGGTGTTTACTTTGGTCGCAGTTAAAGATGCAAATGCTTGGGAGTTGAGACCAGATATGGGGCTGATTATCTTATACACTGGAATTGTTTCAACTGTTATCCGATACATTTTGATCAGCTGGTGCGTGTGGAAGGCTGGAGCTCTTTATTGCTCTATGTTCAAGCCTCTTGGGATCATGTTTGGCGTGATCATGGGTGCGTGTCATCTTTTTGGGAGATCCATTCTATTTTGGAAGGTAATGCGCGCTGCAATGTATATTTGTATAATCGTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006810 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0009266 GO:0009408 GO:0009628 GO:0009914 GO:0009926 GO:0009987 GO:0010817 GO:0033554 GO:0044237 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0051716 GO:0051726 GO:0060918 GO:0065007 GO:0065008 GO:0072593

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glutaredoxin Thioredoxin

Protein Analysis

229

Amino Acids

25.86

Weight (kDa)

9.61

Isoelectric Point (pI)

43.29

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008547)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G04950
fragaria_vesca	FvH4_3g09370
malus_domestica	MD00G1095700.v1.1 MD05G1313900.v1.1
prunus_persica	Prupe.1G187000_v2.0.a1 Prupe.1G187000_v2.0.a1 Prupe.1G187400_v2.0.a1 Prupe.4G042200_v2.0.a1 Prupe.4G045800_v2.0.a1
pyrus_communis	pycom05g29170 pycom10g17420 pycom10g24760
rosa_chinensis	RchiOBHm_Chr5g0008221
rosa_laevigata	RLG00000031550
rosa_multiflora	Rmu_co8473947.1_g000001 Rmu_sc0001626.1_g000022
rosa_roxburghii	Rroxscaffold_1G00068260
rosa_rugosa	Rorug04G0434500
rosa_samantha	Rh5AG062800 Rh5BG059100 Rh5CG069700 Rh5DG058700
rosa_wichuraiana	Rw5G005820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	146
AccB1I	GGYRCC	1 cut(s)	146
AccI	GTMKAC	1 cut(s)	413
AccII	CGCG	1 cut(s)	660
AciI	CCGC	3 cut(s)	28, 58, 150
AclWI	GGATC	3 cut(s)	340, 596, 627
AcuI	CTGAAG	1 cut(s)	335
AfaI	GTAC	4 cut(s)	148, 218, 329, 359
AfiI	CCNNNNNNNGG	2 cut(s)	143, 473
AgsI	TTSAA	3 cut(s)	267, 507, 577
AluBI	AGCT	3 cut(s)	132, 534, 557
AluI	AGCT	3 cut(s)	132, 534, 557
Alw21I	GWGCWC	1 cut(s)	559
Alw26I	GTCTC	1 cut(s)	457
AlwI	GGATC	3 cut(s)	340, 596, 627
ApeKI	GCWGC	1 cut(s)	662
Asp700I	GAANNNNTTC	1 cut(s)	502
Asp718I	GGTACC	1 cut(s)	146
AspLEI	GCGC	2 cut(s)	660, 662
AspS9I	GGNCC	1 cut(s)	255
AsuC2I	CCSGG	1 cut(s)	362
AsuHPI	GGTGA	2 cut(s)	12, 304
AvaII	GGWCC	1 cut(s)	255
BanI	GGYRCC	1 cut(s)	146
BanII	GRGCYC	1 cut(s)	559
Bbv12I	GWGCWC	1 cut(s)	559
BbvI	GCAGC	1 cut(s)	649
BccI	CCATC	2 cut(s)	199, 266
BclI	TGATCA	2 cut(s)	528, 603
BcnI	CCSGG	1 cut(s)	362
BcoDI	GTCTC	1 cut(s)	457
BfmI	CTRYAG	1 cut(s)	335
BisI	GCNGC	1 cut(s)	663
BlsI	GCNGC	1 cut(s)	664
Bme1390I	CCNGG	1 cut(s)	362
Bme18I	GGWCC	1 cut(s)	255
BmgT120I	GGNCC	1 cut(s)	255
BmiI	GGNNCC	2 cut(s)	148, 256
BmrFI	CCNGG	1 cut(s)	362
BmsI	GCATC	2 cut(s)	350, 433
BpmI	CTGGAG	2 cut(s)	241, 573
BpuMI	CCSGG	1 cut(s)	362
Bsa29I	ATCGAT	1 cut(s)	344
BsaI	GGTCTC	1 cut(s)	457
BsaXI	ACNNNNNCTCC	2 cut(s)	267, 297
Bsc4I	CCNNNNNNNGG	2 cut(s)	143, 473
Bse1I	ACTGG	3 cut(s)	224, 315, 499
Bse3DI	GCAATG	1 cut(s)	672
BseCI	ATCGAT	1 cut(s)	344
BseGI	GGATG	1 cut(s)	210
BseLI	CCNNNNNNNGG	2 cut(s)	143, 473
BseMI	GCAATG	1 cut(s)	672
BseNI	ACTGG	3 cut(s)	224, 315, 499
BsePI	GCGCGC	1 cut(s)	658
BseRI	GAGGAG	1 cut(s)	24
BseXI	GCAGC	1 cut(s)	649
Bsh1236I	CGCG	1 cut(s)	660
BshNI	GGYRCC	1 cut(s)	146
BshVI	ATCGAT	1 cut(s)	344
BsiHKAI	GWGCWC	1 cut(s)	559
BsiSI	CCGG	1 cut(s)	362
BslFI	GGGAC	1 cut(s)	268
BslI	CCNNNNNNNGG	2 cut(s)	143, 473
BsmAI	GTCTC	1 cut(s)	457
BsmFI	GGGAC	1 cut(s)	268
BsmI	GAATGC	1 cut(s)	173
Bso31I	GGTCTC	1 cut(s)	457
Bsp1286I	GDGCHC	1 cut(s)	559
Bsp143I	GATC	6 cut(s)	14, 345, 528, 588, 603, 632
BspACI	CCGC	3 cut(s)	28, 58, 150
BspDI	ATCGAT	1 cut(s)	344
BspFNI	CGCG	1 cut(s)	660
BspLI	GGNNCC	2 cut(s)	148, 256
BspMAI	CTGCAG	1 cut(s)	339
BspPI	GGATC	3 cut(s)	340, 596, 627
BspT107I	GGYRCC	1 cut(s)	146
BspTNI	GGTCTC	1 cut(s)	457
BsrDI	GCAATG	1 cut(s)	672
BsrI	ACTGG	3 cut(s)	224, 315, 499
BssHII	GCGCGC	1 cut(s)	658
BssMI	GATC	6 cut(s)	14, 345, 528, 588, 603, 632
Bst4CI	ACNGT	3 cut(s)	406, 418, 511
BstC8I	GCNNGC	3 cut(s)	75, 339, 660
BstF5I	GGATG	1 cut(s)	210
BstFNI	CGCG	1 cut(s)	660
BstHHI	GCGC	2 cut(s)	660, 662
BstKTI	GATC	6 cut(s)	17, 348, 531, 591, 606, 635
BstMAI	GTCTC	1 cut(s)	457
BstMBI	GATC	6 cut(s)	14, 345, 528, 588, 603, 632
BstMWI	GCNNNNNNNGC	1 cut(s)	83
BstNSI	RCATGY	1 cut(s)	90
BstSCI	CCNGG	1 cut(s)	360
BstSFI	CTRYAG	1 cut(s)	335
BstUI	CGCG	1 cut(s)	660
BstV1I	GCAGC	1 cut(s)	649
BstX2I	RGATCY	1 cut(s)	632
BstXI	CCANNNNNNTGG	1 cut(s)	250
BstYI	RGATCY	1 cut(s)	632
Bsu15I	ATCGAT	1 cut(s)	344
BsuTUI	ATCGAT	1 cut(s)	344
BtsCI	GGATG	1 cut(s)	210
BtsIMutI	CAGTG	1 cut(s)	492
Cac8I	GCNNGC	3 cut(s)	75, 339, 660
CfoI	GCGC	2 cut(s)	660, 662
Cfr13I	GGNCC	1 cut(s)	255
ClaI	ATCGAT	1 cut(s)	344
Csp6I	GTAC	4 cut(s)	147, 217, 328, 358
CviAII	CATG	4 cut(s)	87, 154, 592, 607
CviJI	RGCY	7 cut(s)	132, 242, 478, 534, 551, 557, 580
CviKI_1	RGCY	7 cut(s)	132, 242, 478, 534, 551, 557, 580
CviQI	GTAC	4 cut(s)	147, 217, 328, 358
DpnI	GATC	6 cut(s)	16, 347, 530, 590, 605, 634
DpnII	GATC	6 cut(s)	14, 345, 528, 588, 603, 632
Ecl136II	GAGCTC	1 cut(s)	557
Eco24I	GRGCYC	1 cut(s)	559
Eco31I	GGTCTC	1 cut(s)	457
Eco47I	GGWCC	1 cut(s)	255
Eco53kI	GAGCTC	1 cut(s)	557
Eco57I	CTGAAG	1 cut(s)	335
EcoICRI	GAGCTC	1 cut(s)	557
EcoT38I	GRGCYC	1 cut(s)	559
FaeI	CATG	4 cut(s)	90, 157, 595, 610
FaqI	GGGAC	1 cut(s)	268
FatI	CATG	4 cut(s)	86, 153, 591, 606
FbaI	TGATCA	2 cut(s)	528, 603
FblI	GTMKAC	1 cut(s)	413
Fnu4HI	GCNGC	1 cut(s)	663
FokI	GGATG	1 cut(s)	217
FriOI	GRGCYC	1 cut(s)	559
Fsp4HI	GCNGC	1 cut(s)	663
GlaI	GCGC	2 cut(s)	659, 661
GluI	GCNGC	1 cut(s)	663
GsuI	CTGGAG	2 cut(s)	241, 573
HapII	CCGG	1 cut(s)	362
HhaI	GCGC	2 cut(s)	660, 662
Hin1II	CATG	4 cut(s)	90, 157, 595, 610
Hin6I	GCGC	2 cut(s)	658, 660
HinP1I	GCGC	2 cut(s)	658, 660
HinfI	GANTC	1 cut(s)	63
HpaII	CCGG	1 cut(s)	362
HphI	GGTGA	2 cut(s)	12, 304
Hpy166II	GTNNAC	3 cut(s)	217, 414, 423
Hpy188I	TCNGA	2 cut(s)	354, 518
Hpy188III	TCNNGA	1 cut(s)	202
Hpy8I	GTNNAC	3 cut(s)	217, 414, 423
HpyAV	CCTTC	5 cut(s)	88, 219, 359, 541, 643
HpyCH4III	ACNGT	3 cut(s)	406, 418, 511
HpyCH4V	TGCA	6 cut(s)	12, 86, 173, 337, 446, 665
HpyF10VI	GCNNNNNNNGC	1 cut(s)	83
Hsp92II	CATG	4 cut(s)	90, 157, 595, 610
HspAI	GCGC	2 cut(s)	658, 660
KpnI	GGTACC	1 cut(s)	150
Ksp22I	TGATCA	2 cut(s)	528, 603
Kzo9I	GATC	6 cut(s)	14, 345, 528, 588, 603, 632
LmnI	GCTCC	2 cut(s)	275, 554
Lsp1109I	GCAGC	1 cut(s)	649
LweI	GCATC	2 cut(s)	350, 433
MaeIII	GTNAC	1 cut(s)	286
MalI	GATC	6 cut(s)	16, 347, 530, 590, 605, 634
MboI	GATC	6 cut(s)	14, 345, 528, 588, 603, 632
MboII	GAAGA	2 cut(s)	58, 388
MflI	RGATCY	1 cut(s)	632
MhlI	GDGCHC	1 cut(s)	559
MluCI	AATT	3 cut(s)	6, 267, 498
MnlI	CCTC	4 cut(s)	42, 45, 173, 591
MroXI	GAANNNNTTC	1 cut(s)	502
MseI	TTAA	3 cut(s)	159, 230, 438
MspA1I	CMGCKG	1 cut(s)	534
MspI	CCGG	1 cut(s)	362
MspR9I	CCNGG	1 cut(s)	362
Mva1269I	GAATGC	1 cut(s)	173
MvnI	CGCG	1 cut(s)	660
MwoI	GCNNNNNNNGC	1 cut(s)	83
NciI	CCSGG	1 cut(s)	362
NdeII	GATC	6 cut(s)	14, 345, 528, 588, 603, 632
NlaIII	CATG	4 cut(s)	90, 157, 595, 610
NlaIV	GGNNCC	2 cut(s)	148, 256
NmuCI	GTSAC	1 cut(s)	286
NspI	RCATGY	1 cut(s)	90
PauI	GCGCGC	1 cut(s)	658
PctI	GAATGC	1 cut(s)	173
PdmI	GAANNNNTTC	1 cut(s)	502
PfeI	GAWTC	1 cut(s)	63
PkrI	GCNGC	1 cut(s)	664
Psp124BI	GAGCTC	1 cut(s)	559
PspN4I	GGNNCC	2 cut(s)	148, 256
PspPI	GGNCC	1 cut(s)	255
PstI	CTGCAG	1 cut(s)	339
PsuI	RGATCY	1 cut(s)	632
PteI	GCGCGC	1 cut(s)	658
PvuII	CAGCTG	1 cut(s)	534
RsaI	GTAC	4 cut(s)	148, 218, 329, 359
RsaNI	GTAC	4 cut(s)	147, 217, 328, 358
SacI	GAGCTC	1 cut(s)	559
SaqAI	TTAA	3 cut(s)	159, 230, 438
SatI	GCNGC	1 cut(s)	663
Sau3AI	GATC	6 cut(s)	14, 345, 528, 588, 603, 632
Sau96I	GGNCC	1 cut(s)	255
ScrFI	CCNGG	1 cut(s)	362
SduI	GDGCHC	1 cut(s)	559
SetI	ASST	6 cut(s)	134, 165, 230, 536, 559, 654
SfaNI	GCATC	2 cut(s)	350, 433
SfcI	CTRYAG	1 cut(s)	335
SinI	GGWCC	1 cut(s)	255
Sse9I	AATT	3 cut(s)	6, 267, 498
SsiI	CCGC	3 cut(s)	28, 58, 150
SstI	GAGCTC	1 cut(s)	559
StyD4I	CCNGG	1 cut(s)	360
TaaI	ACNGT	3 cut(s)	406, 418, 511
TaqI	TCGA	1 cut(s)	344
TasI	AATT	3 cut(s)	6, 267, 498
TatI	WGTACW	1 cut(s)	216
TfiI	GAWTC	1 cut(s)	63
Tru1I	TTAA	3 cut(s)	159, 230, 438
Tru9I	TTAA	3 cut(s)	159, 230, 438
TscAI	CASTG	1 cut(s)	499
TseFI	GTSAC	1 cut(s)	286
TseI	GCWGC	1 cut(s)	662
Tsp45I	GTSAC	1 cut(s)	286
TspDTI	ATGAA	1 cut(s)	172
TspRI	CASTG	1 cut(s)	499
VpaK11BI	GGWCC	1 cut(s)	255
XceI	RCATGY	1 cut(s)	90
XmiI	GTMKAC	1 cut(s)	413
XmnI	GAANNNNTTC	1 cut(s)	502

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.