Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0008547

Physical Location & Seq

Genomic Coordinates Forward (+)

4941725 .. 4944788

Gene Structure 3064 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG058700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1104 bp

ATGGCTGCTGGTGCGACTATCCTTGAAACCATTAAAGAGTTGGCAAAAGAAAATGGGTCTTCCCAGGAAAAGATTGGAGCCAGTGATACATTGAAAAAGCGGCTGCAGCAGCTGATTGAATCTAATCCAATCATGCTTTTCATGAAAGGAAACCCCGAAGAGCCCAAATGTGGATTCAGCCAAAAAGTTGTCGACATTTTGAAGGAAGAGAAGGTCAAATTTGGAAGTTTCGATATTCTATCAGACAATGAAGTTAGGGAAGGTTTAAAGAAGTTCTCTAACTGGCCAACATTTCCTCAGCTTTACTGCAAAGGGGAGCTTCTTGGTGGGTGTGACATTGCAATTTCAATGCACGAAAGTGGTGAACTAAAGGAAGTTTTCAGAGACCATGGTATCGATACATTTGATTCTTCTGGGGCAAAAGTGACTGAAGCTGGAAGTGGAAAAGGTGGAACCTCAGCAGCTACCGGTTTGAGTTCAACTCTTACCTCTCGGCTTGAAAGCCTCATTCATTCAAGCCCAGTTATGCTGTTTATGAAGGGAAAACCGGAAGAACCCAAGTGTGGGTTCAGCCGGAAGGTAGTTGATATCCTTGCACAAGAAAAGGTGGAGTTTCAGACCTTTGATATTCTTTCTGATGAGGAAGTTCGTCAAGGGCTCAAAGTTCATTCAAACTGGTCCAGTTATCCTCAACTATATATTAAGGGTGAACTTATTGGTGGATCAGACATTGTGTTGGAGATGCAGAAAAGTGGAGAACTCAAAAAGGTTTTGGCAGAGAAAGGGATTGTTCAGAAAGATACTCTGGAAGATCGTTTAAAGAAATTGATTTCTTCTTCACCAGTGATGCTCTTCATGAAGGGCACACCGGATGCTCCGAAATGTGGTTTTAGTTCCAAAGTTGTTAATGCCCTTACAGAAGATGGTGTTAGTTTTGGGTCATTTGATATTTTAACTGATGAGGAGGTGAGGCAGGGGCTTAAAGTCTTCTCAAACTGGCCAACCTTCCCTCAGCTGTATTACAAAGGTGAGCTAATAGGAGGAAGCGATATTATACTGGAACTGAAGAACAATGGAGAGCTTAAGGCTACTCTGACGGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006810 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0009266 GO:0009408 GO:0009628 GO:0009914 GO:0009926 GO:0009987 GO:0010817 GO:0033554 GO:0044237 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0051716 GO:0051726 GO:0060918 GO:0065007 GO:0065008 GO:0072593

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glutaredoxin Thioredoxin

Protein Analysis

367

Amino Acids

40.28

Weight (kDa)

5.37

Isoelectric Point (pI)

34.06

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glutaredoxin	PF00462	44 - 107	3e-18	Glutaredoxin
Glutaredoxin	PF00462	175 - 239	6.3e-18	Glutaredoxin
Glutaredoxin	PF00462	282 - 346	7.7e-18	Glutaredoxin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008547)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G04950
fragaria_vesca	FvH4_3g09370
malus_domestica	MD00G1095700.v1.1 MD05G1313900.v1.1
prunus_persica	Prupe.1G187000_v2.0.a1 Prupe.1G187000_v2.0.a1 Prupe.1G187400_v2.0.a1 Prupe.4G042200_v2.0.a1 Prupe.4G045800_v2.0.a1
pyrus_communis	pycom05g29170 pycom10g17420 pycom10g24760
rosa_chinensis	RchiOBHm_Chr5g0008221
rosa_laevigata	RLG00000031550
rosa_multiflora	Rmu_co8473947.1_g000001 Rmu_sc0001626.1_g000022
rosa_roxburghii	Rroxscaffold_1G00068260
rosa_rugosa	Rorug04G0434500
rosa_samantha	Rh5AG062800 Rh5BG059100 Rh5CG069700 Rh5DG058700
rosa_wichuraiana	Rw5G005820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	192
AciI	CCGC	1 cut(s)	100
AclWI	GGATC	1 cut(s)	730
AcoI	YGGCCR	2 cut(s)	284, 998
AcsI	RAATTY	1 cut(s)	218
AcuI	CTGAAG	2 cut(s)	450, 1085
AfiI	CCNNNNNNNGG	4 cut(s)	170, 563, 564, 884
AflII	CTTAAG	1 cut(s)	1082
AgeI	ACCGGT	1 cut(s)	467
AgsI	TTSAA	9 cut(s)	26, 94, 119, 202, 348, 480, 500, 516, 672
AjnI	CCWGG	1 cut(s)	63
AjuI	GAANNNNNNNTTGG	4 cut(s)	158, 190, 551, 583
AleI	CACNNNNGTG	1 cut(s)	357
AluBI	AGCT	8 cut(s)	112, 301, 319, 434, 464, 1015, 1033, 1081
AluI	AGCT	8 cut(s)	112, 301, 319, 434, 464, 1015, 1033, 1081
Alw26I	GTCTC	1 cut(s)	378
AlwI	GGATC	1 cut(s)	730
AlwNI	CAGNNNCTG	1 cut(s)	112
AoxI	GGCC	2 cut(s)	284, 998
ApeKI	GCWGC	5 cut(s)	5, 103, 106, 109, 461
ApoI	RAATTY	1 cut(s)	218
AsiGI	ACCGGT	1 cut(s)	467
AspS9I	GGNCC	1 cut(s)	678
AsuHPI	GGTGA	5 cut(s)	374, 719, 831, 979, 1040
AvaII	GGWCC	1 cut(s)	678
BaeGI	GKGCMC	1 cut(s)	866
BaeI	ACNNNNGTAYC	2 cut(s)	376, 409
BalI	TGGCCA	2 cut(s)	286, 1000
BanII	GRGCYC	2 cut(s)	165, 660
BbsI	GAAGAC	2 cut(s)	51, 979
BbvCI	CCTCAGC	3 cut(s)	297, 457, 1011
BbvI	GCAGC	4 cut(s)	90, 118, 121, 473
BccI	CCATC	1 cut(s)	917
BciT130I	CCWGG	1 cut(s)	65
BcoDI	GTCTC	1 cut(s)	378
BfmI	CTRYAG	1 cut(s)	104
BfrI	CTTAAG	1 cut(s)	1082
BisI	GCNGC	6 cut(s)	6, 101, 104, 107, 110, 462
BlsI	GCNGC	6 cut(s)	7, 102, 105, 108, 111, 463
Bme1390I	CCNGG	1 cut(s)	65
Bme18I	GGWCC	1 cut(s)	678
BmgT120I	GGNCC	1 cut(s)	678
BmiI	GGNNCC	2 cut(s)	79, 454
BmrFI	CCNGG	1 cut(s)	65
BmrI	ACTGGG	1 cut(s)	515
BmsI	GCATC	3 cut(s)	732, 837, 862
BmuI	ACTGGG	1 cut(s)	515
BpiI	GAAGAC	2 cut(s)	51, 979
BplI	GAGNNNNNCTC	2 cut(s)	466, 498
Bpu10I	CCTNAGC	3 cut(s)	297, 457, 1011
Bsa29I	ATCGAT	1 cut(s)	396
BsaI	GGTCTC	1 cut(s)	378
BsaJI	CCNNGG	2 cut(s)	63, 388
BsaWI	WCCGGW	3 cut(s)	467, 547, 868
Bsc4I	CCNNNNNNNGG	4 cut(s)	170, 563, 564, 884
Bse118I	RCCGGY	1 cut(s)	467
Bse1I	ACTGG	8 cut(s)	81, 287, 521, 680, 681, 842, 1001, 1062
Bse3DI	GCAATG	1 cut(s)	336
BseBI	CCWGG	1 cut(s)	65
BseCI	ATCGAT	1 cut(s)	396
BseDI	CCNNGG	2 cut(s)	63, 388
BseGI	GGATG	1 cut(s)	877
BseLI	CCNNNNNNNGG	4 cut(s)	170, 563, 564, 884
BseMI	GCAATG	1 cut(s)	336
BseMII	CTCAG	3 cut(s)	311, 471, 1025
BseNI	ACTGG	8 cut(s)	81, 287, 521, 680, 681, 842, 1001, 1062
BseRI	GAGGAG	1 cut(s)	977
BseSI	GKGCMC	1 cut(s)	866
BseXI	GCAGC	4 cut(s)	90, 118, 121, 473
BshFI	GGCC	2 cut(s)	286, 1000
BshTI	ACCGGT	1 cut(s)	467
BshVI	ATCGAT	1 cut(s)	396
BsiSI	CCGG	4 cut(s)	468, 548, 574, 869
BslI	CCNNNNNNNGG	4 cut(s)	170, 563, 564, 884
BsmAI	GTCTC	1 cut(s)	378
BsnI	GGCC	2 cut(s)	286, 1000
Bso31I	GGTCTC	1 cut(s)	378
Bsp1286I	GDGCHC	3 cut(s)	165, 660, 866
Bsp143I	GATC	2 cut(s)	722, 811
Bsp19I	CCATGG	1 cut(s)	388
BspACI	CCGC	1 cut(s)	100
BspANI	GGCC	2 cut(s)	286, 1000
BspCNI	CTCAG	3 cut(s)	310, 470, 1024
BspDI	ATCGAT	1 cut(s)	396
BspHI	TCATGA	2 cut(s)	141, 855
BspLI	GGNNCC	2 cut(s)	79, 454
BspMAI	CTGCAG	1 cut(s)	108
BspPI	GGATC	1 cut(s)	730
BspQI	GCTCTTC	2 cut(s)	153, 857
BspTI	CTTAAG	1 cut(s)	1082
BspTNI	GGTCTC	1 cut(s)	378
BsrDI	GCAATG	1 cut(s)	336
BsrFI	RCCGGY	1 cut(s)	467
BsrI	ACTGG	8 cut(s)	81, 287, 521, 680, 681, 842, 1001, 1062
BssAI	RCCGGY	1 cut(s)	467
BssECI	CCNNGG	2 cut(s)	63, 388
BssMI	GATC	2 cut(s)	722, 811
BssT1I	CCWWGG	1 cut(s)	388
Bst2UI	CCWGG	1 cut(s)	65
Bst6I	CTCTTC	3 cut(s)	153, 201, 857
BstAFI	CTTAAG	1 cut(s)	1082
BstDEI	CTNAG	3 cut(s)	297, 457, 1011
BstDSI	CCRYGG	1 cut(s)	388
BstF5I	GGATG	1 cut(s)	877
BstKTI	GATC	2 cut(s)	725, 814
BstMAI	GTCTC	1 cut(s)	378
BstMBI	GATC	2 cut(s)	722, 811
BstMWI	GCNNNNNNNGC	3 cut(s)	11, 106, 109
BstNI	CCWGG	1 cut(s)	65
BstSCI	CCNGG	1 cut(s)	63
BstSFI	CTRYAG	1 cut(s)	104
BstSLI	GKGCMC	1 cut(s)	866
BstV1I	GCAGC	4 cut(s)	90, 118, 121, 473
BstV2I	GAAGAC	2 cut(s)	51, 979
Bsu15I	ATCGAT	1 cut(s)	396
BsuRI	GGCC	2 cut(s)	286, 1000
BsuTUI	ATCGAT	1 cut(s)	396
BtgI	CCRYGG	1 cut(s)	388
BtsCI	GGATG	1 cut(s)	877
BtsIMutI	CAGTG	2 cut(s)	88, 849
CaiI	CAGNNNCTG	1 cut(s)	112
CciI	TCATGA	2 cut(s)	141, 855
Cfr10I	RCCGGY	1 cut(s)	467
Cfr13I	GGNCC	1 cut(s)	678
ClaI	ATCGAT	1 cut(s)	396
CspAI	ACCGGT	1 cut(s)	467
CviAII	CATG	4 cut(s)	133, 142, 389, 856
DdeI	CTNAG	3 cut(s)	297, 457, 1011
DpnI	GATC	2 cut(s)	724, 813
DpnII	GATC	2 cut(s)	722, 811
DraI	TTTAAA	2 cut(s)	267, 819
EaeI	YGGCCR	2 cut(s)	284, 998
Eam1104I	CTCTTC	3 cut(s)	153, 201, 857
EarI	CTCTTC	3 cut(s)	153, 201, 857
Eco130I	CCWWGG	1 cut(s)	388
Eco24I	GRGCYC	2 cut(s)	165, 660
Eco31I	GGTCTC	1 cut(s)	378
Eco32I	GATATC	1 cut(s)	589
Eco47I	GGWCC	1 cut(s)	678
Eco57I	CTGAAG	2 cut(s)	450, 1085
EcoRII	CCWGG	1 cut(s)	63
EcoRV	GATATC	1 cut(s)	589
EcoT14I	CCWWGG	1 cut(s)	388
EcoT38I	GRGCYC	2 cut(s)	165, 660
ErhI	CCWWGG	1 cut(s)	388
FaeI	CATG	4 cut(s)	136, 145, 392, 859
FaiI	YATR	9 cut(s)	134, 143, 390, 527, 536, 697, 699, 857, 1055
FalI	AAGNNNNNCTT	2 cut(s)	303, 335
FatI	CATG	4 cut(s)	132, 141, 388, 855
FblI	GTMKAC	1 cut(s)	192
Fnu4HI	GCNGC	6 cut(s)	6, 101, 104, 107, 110, 462
FokI	GGATG	1 cut(s)	884
FriOI	GRGCYC	2 cut(s)	165, 660
Fsp4HI	GCNGC	6 cut(s)	6, 101, 104, 107, 110, 462
GluI	GCNGC	6 cut(s)	6, 101, 104, 107, 110, 462
HaeIII	GGCC	2 cut(s)	286, 1000
HapII	CCGG	4 cut(s)	468, 548, 574, 869
Hin1II	CATG	4 cut(s)	136, 145, 392, 859
HincII	GTYRAC	1 cut(s)	193
HindII	GTYRAC	1 cut(s)	193
HinfI	GANTC	3 cut(s)	119, 174, 407
HpaII	CCGG	4 cut(s)	468, 548, 574, 869
HphI	GGTGA	5 cut(s)	374, 719, 831, 979, 1040
Hpy166II	GTNNAC	3 cut(s)	193, 365, 710
Hpy188I	TCNGA	8 cut(s)	244, 383, 618, 637, 727, 795, 879, 1095
Hpy188III	TCNNGA	3 cut(s)	142, 806, 856
Hpy8I	GTNNAC	3 cut(s)	193, 365, 710
HpyAV	CCTTC	7 cut(s)	196, 205, 254, 532, 571, 853, 1015
HpyCH4V	TGCA	6 cut(s)	106, 309, 341, 352, 596, 745
HpyF10VI	GCNNNNNNNGC	3 cut(s)	11, 106, 109
HpyF3I	CTNAG	3 cut(s)	297, 457, 1011
Hsp92II	CATG	4 cut(s)	136, 145, 392, 859
Kzo9I	GATC	2 cut(s)	722, 811
LguI	GCTCTTC	2 cut(s)	153, 857
LmnI	GCTCC	3 cut(s)	77, 316, 880
Lsp1109I	GCAGC	4 cut(s)	90, 118, 121, 473
LweI	GCATC	3 cut(s)	732, 837, 862
MaeIII	GTNAC	2 cut(s)	332, 424
MalI	GATC	2 cut(s)	724, 813
MboI	GATC	2 cut(s)	722, 811
MhlI	GDGCHC	3 cut(s)	165, 660, 866
MlsI	TGGCCA	2 cut(s)	286, 1000
MluCI	AATT	3 cut(s)	218, 342, 824
MluNI	TGGCCA	2 cut(s)	286, 1000
MmeI	TCCRAC	1 cut(s)	717
Mox20I	TGGCCA	2 cut(s)	286, 1000
MscI	TGGCCA	2 cut(s)	286, 1000
MseI	TTAA	8 cut(s)	33, 266, 702, 818, 906, 953, 981, 1083
MslI	CAYNNNNRTG	1 cut(s)	357
Msp20I	TGGCCA	2 cut(s)	286, 1000
MspA1I	CMGCKG	2 cut(s)	112, 1015
MspCI	CTTAAG	1 cut(s)	1082
MspI	CCGG	4 cut(s)	468, 548, 574, 869
MspR9I	CCNGG	1 cut(s)	65
MvaI	CCWGG	1 cut(s)	65
MwoI	GCNNNNNNNGC	3 cut(s)	11, 106, 109
NcoI	CCATGG	1 cut(s)	388
NdeII	GATC	2 cut(s)	722, 811
NlaIII	CATG	4 cut(s)	136, 145, 392, 859
NlaIV	GGNNCC	2 cut(s)	79, 454
NmeAIII	GCCGAG	1 cut(s)	472
NmuCI	GTSAC	2 cut(s)	332, 424
OliI	CACNNNNGTG	1 cut(s)	357
PagI	TCATGA	2 cut(s)	141, 855
PciSI	GCTCTTC	2 cut(s)	153, 857
PfeI	GAWTC	3 cut(s)	119, 174, 407
PinAI	ACCGGT	1 cut(s)	467
PkrI	GCNGC	6 cut(s)	7, 102, 105, 108, 111, 463
Psp6I	CCWGG	1 cut(s)	63
PspGI	CCWGG	1 cut(s)	63
PspN4I	GGNNCC	2 cut(s)	79, 454
PspPI	GGNCC	1 cut(s)	678
PstI	CTGCAG	1 cut(s)	108
PstNI	CAGNNNCTG	1 cut(s)	112
PvuII	CAGCTG	2 cut(s)	112, 1015
RseI	CAYNNNNRTG	1 cut(s)	357
SalI	GTCGAC	1 cut(s)	191
SapI	GCTCTTC	2 cut(s)	153, 857
SaqAI	TTAA	8 cut(s)	33, 266, 702, 818, 906, 953, 981, 1083
SatI	GCNGC	6 cut(s)	6, 101, 104, 107, 110, 462
Sau3AI	GATC	2 cut(s)	722, 811
Sau96I	GGNCC	1 cut(s)	678
ScrFI	CCNGG	1 cut(s)	65
SduI	GDGCHC	3 cut(s)	165, 660, 866
SfaNI	GCATC	3 cut(s)	732, 837, 862
SfcI	CTRYAG	1 cut(s)	104
SinI	GGWCC	1 cut(s)	678
SmiMI	CAYNNNNRTG	1 cut(s)	357
SmlI	CTYRAG	1 cut(s)	1082
SmoI	CTYRAG	1 cut(s)	1082
Sse9I	AATT	3 cut(s)	218, 342, 824
SsiI	CCGC	1 cut(s)	100
StyD4I	CCNGG	1 cut(s)	63
StyI	CCWWGG	1 cut(s)	388
TaqI	TCGA	3 cut(s)	192, 231, 396
TasI	AATT	3 cut(s)	218, 342, 824
TauI	GCSGC	1 cut(s)	103
TfiI	GAWTC	3 cut(s)	119, 174, 407
Tru1I	TTAA	8 cut(s)	33, 266, 702, 818, 906, 953, 981, 1083
Tru9I	TTAA	8 cut(s)	33, 266, 702, 818, 906, 953, 981, 1083
TscAI	CASTG	2 cut(s)	88, 849
TseFI	GTSAC	2 cut(s)	332, 424
TseI	GCWGC	5 cut(s)	5, 103, 106, 109, 461
Tsp45I	GTSAC	2 cut(s)	332, 424
TspDTI	ATGAA	8 cut(s)	130, 158, 264, 500, 551, 656, 844, 872
TspRI	CASTG	2 cut(s)	88, 849
Vha464I	CTTAAG	1 cut(s)	1082
VpaK11BI	GGWCC	1 cut(s)	678
XapI	RAATTY	1 cut(s)	218
XcmI	CCANNNNNNNNNTGG	2 cut(s)	37, 71
XmiI	GTMKAC	1 cut(s)	192

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.