AT4G05020

External alternative NAD(P)H-ubiquinone oxidoreductase

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
Physical Location & Seq
Forward (+)
2572427 .. 2576599
4173 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G05020.1

Sequence Viewer

Length: 1749 bp
ATGAGAAATTTCAGTGTCTTCGAGAGATTCTCTAAAGCTTTTAAAGATCATCCTTCTCTCACCAGGATTCTCGTCGTCTCCACGATCAGTGGTGGTGGACTTATAGCGTATTCTGAGGCAAACGCATCTTATGGAGCAAATGGTGGTGCTGTTGTTGAAACTGGAACCAAGAAGAAGAAGGTGGTGCTGCTCGGAACTGGATGGGCTGGAACTAGTTTCTTGAAGAATTTGAACAATTCTCAATATGAGGTTCAGATTATATCGCCTCGGAACTACTTTGCTTTCACTCCTTTACTACCTAGTGTTACTTGTGGAACTGTTGAAGCTCGTAGTGTTGTTGAGCCTATTCGAAACATTGGAAGAAAGAATGTTGATACTTCTTACTTGGAGGCAGAATGTTTCAAAATTGATCCAGCTAGCAAGAAGGTTTACTGCCGATCCAAACAAGGCCTTAGTTCAAATGGAAAGAAAGAATTTTCTGTTGACTATGACTACCTTGTAATTGCTACTGGAGCTCAGTCTAACACCTTTAACATACCCGGAGTGGAGGAGAACTGTCATTTTCTGAAAGAGGTTGAAGATGCTCAGAGAATCCGTAAAACTGTAATTGATTCCTTTGAGAAGGCAAGTCTACCAGAACTAAGCGATGAAGAGAGAAAGAGAATCCTGCATTTTGTGGTTGTTGGTGGTGGGCCAACAGGTGTTGAGTTTGCCGCTGAGCTACATGATTTTGTTACTGAGGATCTAGTCAGTCTCTATCCTAGAGCCAAGGGTTCAGTGCGAATCACGCTTCTGGAGGCCGCAGACCACATCCTGACCATGTTTGACAAGAGAATCACTGAGTTTGCCGAAGAAAAGTTTAGCAGAGATGGAATTGATGTGAAACTTGGCTCGATGGTAACTAAAGTGAATGAGAAAGATATATCTGCTAAAACCAAAGGAGGAGAGGTTTCCTCGATTCCTTATGGAATGATTGTCTGGTCAACTGGTATTGGAACTCGTCCTGTGATAAAAGATTTTATGAAACAAATTGGTCAGGGTAATAGACGAGCTCTGGCAACTGATGAATGGCTTCGCGTAGAAGGAACTGATAATATATATGCCCTTGGTGATTGCGCAACCATTAACCAGCGCAAAGTCATGGAAGATGTTTCTGCTATTTTTAGCAAAGCAGACAAAGACAAGTCTGGGACACTGACTCTCAAAGAGTTCCAAGAAGCAATGGATGACATTTGTGTTAGATACCCTCAAGTGGAGCTCTACTTGAAGAGTAAACGTATGCGTGGCATTGCAGATCTTCTTAAAGAAGCCGAAACTGATGATGTATCTAAGAATAACATTGAACTGAAGATCGAAGAGTTCAAATCGGCTCTATCTCAGGTTGACTCACAAGTGAAGTTTCTTCCAGCTACTGCACAGGTTGCTGCGCAGCAAGGTGCTTACCTAGCTAAATGCTTTGACCGTATGGAAGAGTGTGAGAAGAGTCCAGAAGGTCCCATTAGGATGAGAGGAGAAGGTCGTCACCGTTTCCGCCCCTTCAGGTATAGGCATCTGGGACAATTTGCACCACTGGGAGGGGAGCAAACGGCAGCACAACTTCCAGGAGATTGGGTTTCTATTGGACACAGCAGCCAGTGGCTCTGGTACTCCGTCTACGCCAGTAAGCAAGTGAGCTGGCGTACGAGAGTGCTTGTGGTTTCAGATTGGATGAGGCGTTTCATCTTTGGTAGAGATTCCAGTAGCATCTGA

Protein Analysis

582

Amino Acids

65.06

Weight (kDa)

8.54

Isoelectric Point (pI)

34.17

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pyr_redox_2 PF07992 59 - 380 6.1e-61 Pyridine nucleotide-disulphide oxidoreductase
Pyr_redox PF00070 224 - 307 1.5e-10 Pyridine nucleotide-disulphide oxidoreductase
EF-hand_1 PF00036 384 - 409 6.6e-06 EF hand domain
NDH2_C PF22366 517 - 578 2e-15 NDH2 C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 2 cut(s) 1117, 1428
AccI GTMKAC 2 cut(s) 631, 1653
AccII CGCG 1 cut(s) 1077
AciI CCGC 3 cut(s) 714, 801, 1531
AclWI GGATC 3 cut(s) 404, 432, 750
AcsI RAATTY 3 cut(s) 7, 226, 473
AcuI CTGAAG 2 cut(s) 1367, 1522
AfaI GTAC 2 cut(s) 1646, 1681
AfiI CCNNNNNNNGG 2 cut(s) 1252, 1574
AhlI ACTAGT 1 cut(s) 212
AjnI CCWGG 2 cut(s) 62, 1600
Alw21I GWGCWC 3 cut(s) 517, 1054, 1260
Alw26I GTCTC 2 cut(s) 82, 758
AlwI GGATC 3 cut(s) 404, 432, 750
AlwNI CAGNNNCTG 1 cut(s) 1412
AoxI GGCC 3 cut(s) 448, 692, 798
ApeKI GCWGC 5 cut(s) 187, 1424, 1429, 1589, 1629
ApoI RAATTY 3 cut(s) 7, 226, 473
Asp700I GAANNNNTTC 1 cut(s) 1071
AspLEI GCGC 3 cut(s) 1118, 1134, 1429
AspS9I GGNCC 2 cut(s) 692, 1493
AsuC2I CCSGG 1 cut(s) 540
AsuHPI GGTGA 3 cut(s) 52, 1121, 1514
AsuII TTCGAA 1 cut(s) 349
AsuNHI GCTAGC 1 cut(s) 416
AvaII GGWCC 1 cut(s) 1493
BanII GRGCYC 3 cut(s) 517, 1054, 1260
BbsI GAAGAC 1 cut(s) 10
Bbv12I GWGCWC 3 cut(s) 517, 1054, 1260
BbvI GCAGC 5 cut(s) 174, 1411, 1441, 1601, 1641
BccI CCATC 3 cut(s) 195, 863, 889
BceAI ACGGC 1 cut(s) 1602
BciT130I CCWGG 2 cut(s) 64, 1602
BcnI CCSGG 1 cut(s) 540
BcoDI GTCTC 2 cut(s) 82, 758
BcuI ACTAGT 1 cut(s) 212
BfaI CTAG 6 cut(s) 213, 300, 417, 746, 762, 1445
BglII AGATCT 1 cut(s) 1294
BisI GCNGC 7 cut(s) 188, 714, 801, 1425, 1430, 1590, 1630
BlpI GCTNAGC 1 cut(s) 717
BlsI GCNGC 7 cut(s) 189, 715, 802, 1426, 1431, 1591, 1631
Bme1390I CCNGG 3 cut(s) 64, 540, 1602
Bme18I GGWCC 1 cut(s) 1493
BmgT120I GGNCC 2 cut(s) 692, 1493
BmiI GGNNCC 2 cut(s) 166, 1495
BmrFI CCNGG 3 cut(s) 64, 540, 1602
BmrI ACTGGG 1 cut(s) 1580
BmsI GCATC 3 cut(s) 134, 571, 1558
BmtI GCTAGC 1 cut(s) 420
BmuI ACTGGG 1 cut(s) 1580
BpiI GAAGAC 1 cut(s) 10
BplI GAGNNNNNCTC 4 cut(s) 14, 46, 938, 970
BpmI CTGGAG 2 cut(s) 531, 815
Bpu1102I GCTNAGC 1 cut(s) 717
Bpu14I TTCGAA 1 cut(s) 349
BpuEI CTTGAG 1 cut(s) 1233
BpuMI CCSGG 1 cut(s) 540
BsaJI CCNNGG 3 cut(s) 266, 768, 1105
BsaXI ACNNNNNCTCC 4 cut(s) 933, 963, 1596, 1626
Bsc4I CCNNNNNNNGG 2 cut(s) 1252, 1574
Bse1I ACTGG 8 cut(s) 166, 202, 514, 991, 1575, 1633, 1659, 1737
Bse3DI GCAATG 2 cut(s) 1227, 1287
BseBI CCWGG 2 cut(s) 64, 1602
BseDI CCNNGG 3 cut(s) 266, 768, 1105
BseGI GGATG 6 cut(s) 49, 206, 810, 1231, 1509, 1713
BseLI CCNNNNNNNGG 2 cut(s) 1252, 1574
BseMI GCAATG 2 cut(s) 1227, 1287
BseMII CTCAG 7 cut(s) 105, 530, 599, 708, 729, 831, 1391
BseNI ACTGG 8 cut(s) 166, 202, 514, 991, 1575, 1633, 1659, 1737
BseRI GAGGAG 3 cut(s) 563, 957, 1524
BseXI GCAGC 5 cut(s) 174, 1411, 1441, 1601, 1641
BsgI GTGCAG 1 cut(s) 1398
Bsh1236I CGCG 1 cut(s) 1077
BshFI GGCC 3 cut(s) 450, 694, 800
BsiHKAI GWGCWC 3 cut(s) 517, 1054, 1260
BsiSI CCGG 1 cut(s) 540
BsiWI CGTACG 1 cut(s) 1679
BslFI GGGAC 3 cut(s) 1204, 1479, 1569
BslI CCNNNNNNNGG 2 cut(s) 1252, 1574
BsmAI GTCTC 2 cut(s) 82, 758
BsmBI CGTCTC 1 cut(s) 82
BsmFI GGGAC 3 cut(s) 1204, 1479, 1569
BsnI GGCC 3 cut(s) 450, 694, 800
Bsp119I TTCGAA 1 cut(s) 349
Bsp1286I GDGCHC 3 cut(s) 517, 1054, 1260
Bsp143I GATC 7 cut(s) 46, 84, 409, 437, 742, 1294, 1350
Bsp1720I GCTNAGC 1 cut(s) 717
BspACI CCGC 3 cut(s) 714, 801, 1531
BspANI GGCC 3 cut(s) 450, 694, 800
BspCNI CTCAG 7 cut(s) 106, 529, 598, 709, 730, 832, 1390
BspFNI CGCG 1 cut(s) 1077
BspLI GGNNCC 2 cut(s) 166, 1495
BspOI GCTAGC 1 cut(s) 420
BspPI GGATC 3 cut(s) 404, 432, 750
BspT104I TTCGAA 1 cut(s) 349
BsrDI GCAATG 2 cut(s) 1227, 1287
BsrI ACTGG 8 cut(s) 166, 202, 514, 991, 1575, 1633, 1659, 1737
BssECI CCNNGG 3 cut(s) 266, 768, 1105
BssMI GATC 7 cut(s) 46, 84, 409, 437, 742, 1294, 1350
BssT1I CCWWGG 2 cut(s) 768, 1105
Bst2UI CCWGG 2 cut(s) 64, 1602
Bst4CI ACNGT 5 cut(s) 319, 557, 604, 1463, 1526
Bst6I CTCTTC 5 cut(s) 645, 1262, 1350, 1464, 1475
BstAPI GCANNNNNTGC 1 cut(s) 1421
BstBI TTCGAA 1 cut(s) 349
BstC8I GCNNGC 2 cut(s) 418, 1676
BstF5I GGATG 6 cut(s) 49, 206, 810, 1231, 1509, 1713
BstFNI CGCG 1 cut(s) 1077
BstHHI GCGC 3 cut(s) 1118, 1134, 1429
BstKTI GATC 7 cut(s) 49, 87, 412, 440, 745, 1297, 1353
BstMAI GTCTC 2 cut(s) 82, 758
BstMBI GATC 7 cut(s) 46, 84, 409, 437, 742, 1294, 1350
BstMWI GCNNNNNNNGC 4 cut(s) 512, 787, 1421, 1445
BstNI CCWGG 2 cut(s) 64, 1602
BstSCI CCNGG 3 cut(s) 62, 538, 1600
BstUI CGCG 1 cut(s) 1077
BstV1I GCAGC 5 cut(s) 174, 1411, 1441, 1601, 1641
BstV2I GAAGAC 1 cut(s) 10
BstX2I RGATCY 2 cut(s) 742, 1294
BstXI CCANNNNNNTGG 1 cut(s) 1608
BstYI RGATCY 2 cut(s) 742, 1294
BsuRI GGCC 3 cut(s) 450, 694, 800
BtgZI GCGATG 1 cut(s) 660
BtsCI GGATG 6 cut(s) 49, 206, 810, 1231, 1509, 1713
BtsIMutI CAGTG 7 cut(s) 19, 94, 783, 837, 1193, 1568, 1640
Cac8I GCNNGC 2 cut(s) 418, 1676
CaiI CAGNNNCTG 1 cut(s) 1412
CfoI GCGC 3 cut(s) 1118, 1134, 1429
Cfr13I GGNCC 2 cut(s) 692, 1493
Csp6I GTAC 2 cut(s) 1645, 1680
CviAII CATG 3 cut(s) 725, 820, 1141
CviQI GTAC 2 cut(s) 1645, 1680
DpnI GATC 7 cut(s) 48, 86, 411, 439, 744, 1296, 1352
DpnII GATC 7 cut(s) 46, 84, 409, 437, 742, 1294, 1350
DraI TTTAAA 1 cut(s) 43
Eam1104I CTCTTC 5 cut(s) 645, 1262, 1350, 1464, 1475
EarI CTCTTC 5 cut(s) 645, 1262, 1350, 1464, 1475
EciI GGCGGA 1 cut(s) 1520
Ecl136II GAGCTC 3 cut(s) 515, 1052, 1258
Eco130I CCWWGG 2 cut(s) 768, 1105
Eco147I AGGCCT 1 cut(s) 450
Eco24I GRGCYC 3 cut(s) 517, 1054, 1260
Eco47I GGWCC 1 cut(s) 1493
Eco53kI GAGCTC 3 cut(s) 515, 1052, 1258
Eco57I CTGAAG 2 cut(s) 1367, 1522
EcoICRI GAGCTC 3 cut(s) 515, 1052, 1258
EcoO109I RGGNCCY 1 cut(s) 1493
EcoRII CCWGG 2 cut(s) 62, 1600
EcoT14I CCWWGG 2 cut(s) 768, 1105
EcoT38I GRGCYC 3 cut(s) 517, 1054, 1260
ErhI CCWWGG 2 cut(s) 768, 1105
Esp3I CGTCTC 1 cut(s) 82
FaeI CATG 3 cut(s) 728, 823, 1144
FaqI GGGAC 3 cut(s) 1204, 1479, 1569
FatI CATG 3 cut(s) 724, 819, 1140
FblI GTMKAC 2 cut(s) 631, 1653
Fnu4HI GCNGC 7 cut(s) 188, 714, 801, 1425, 1430, 1590, 1630
FokI GGATG 6 cut(s) 36, 213, 797, 1238, 1516, 1720
FriOI GRGCYC 3 cut(s) 517, 1054, 1260
Fsp4HI GCNGC 7 cut(s) 188, 714, 801, 1425, 1430, 1590, 1630
FspBI CTAG 6 cut(s) 213, 300, 417, 746, 762, 1445
FspI TGCGCA 2 cut(s) 1117, 1428
GlaI GCGC 3 cut(s) 1117, 1133, 1428
GluI GCNGC 7 cut(s) 188, 714, 801, 1425, 1430, 1590, 1630
GsuI CTGGAG 2 cut(s) 531, 815
HaeIII GGCC 3 cut(s) 450, 694, 800
HapII CCGG 1 cut(s) 540
HhaI GCGC 3 cut(s) 1118, 1134, 1429
Hin1II CATG 3 cut(s) 728, 823, 1144
Hin6I GCGC 3 cut(s) 1116, 1132, 1427
HinP1I GCGC 3 cut(s) 1116, 1132, 1427
HincII GTYRAC 3 cut(s) 484, 984, 1384
HindII GTYRAC 3 cut(s) 484, 984, 1384
HindIII AAGCTT 1 cut(s) 36
HpaII CCGG 1 cut(s) 540
HphI GGTGA 3 cut(s) 52, 1121, 1514
Hpy166II GTNNAC 8 cut(s) 98, 430, 484, 632, 984, 1274, 1384, 1654
Hpy188I TCNGA 8 cut(s) 115, 194, 255, 270, 567, 588, 1702, 1748
Hpy188III TCNNGA 5 cut(s) 22, 220, 794, 814, 1487
Hpy8I GTNNAC 8 cut(s) 98, 430, 484, 632, 984, 1274, 1384, 1654
Hpy99I CGWCG 1 cut(s) 77
HpyAV CCTTC 8 cut(s) 63, 172, 418, 616, 1076, 1484, 1508, 1546
HpyCH4III ACNGT 5 cut(s) 319, 557, 604, 1463, 1526
HpyCH4IV ACGT 1 cut(s) 1276
HpyCH4V TGCA 4 cut(s) 670, 1292, 1415, 1565
HpyF10VI GCNNNNNNNGC 4 cut(s) 512, 787, 1421, 1445
HpySE526I ACGT 1 cut(s) 1276
Hsp92II CATG 3 cut(s) 728, 823, 1144
HspAI GCGC 3 cut(s) 1116, 1132, 1427
Kzo9I GATC 7 cut(s) 46, 84, 409, 437, 742, 1294, 1350
LmnI GCTCC 4 cut(s) 134, 512, 1255, 1579
Lsp1109I GCAGC 5 cut(s) 174, 1411, 1441, 1601, 1641
LweI GCATC 3 cut(s) 134, 571, 1558
MaeI CTAG 6 cut(s) 213, 300, 417, 746, 762, 1445
MaeII ACGT 1 cut(s) 1276
MaeIII GTNAC 4 cut(s) 304, 733, 898, 1520
MalI GATC 7 cut(s) 48, 86, 411, 439, 744, 1296, 1352
MboI GATC 7 cut(s) 46, 84, 409, 437, 742, 1294, 1350
MflI RGATCY 2 cut(s) 742, 1294
MhlI GDGCHC 3 cut(s) 517, 1054, 1260
MlyI GAGTC 3 cut(s) 1192, 1379, 1492
MroXI GAANNNNTTC 1 cut(s) 1071
MseI TTAA 4 cut(s) 42, 531, 1125, 1302
MslI CAYNNNNRTG 1 cut(s) 1502
MspA1I CMGCKG 1 cut(s) 716
MspI CCGG 1 cut(s) 540
MspR9I CCNGG 3 cut(s) 64, 540, 1602
MvaI CCWGG 2 cut(s) 64, 1602
MvnI CGCG 1 cut(s) 1077
MwoI GCNNNNNNNGC 4 cut(s) 512, 787, 1421, 1445
NciI CCSGG 1 cut(s) 540
NdeII GATC 7 cut(s) 46, 84, 409, 437, 742, 1294, 1350
NheI GCTAGC 1 cut(s) 416
NlaIII CATG 3 cut(s) 728, 823, 1144
NlaIV GGNNCC 2 cut(s) 166, 1495
NmuCI GTSAC 1 cut(s) 1520
NsbI TGCGCA 2 cut(s) 1117, 1428
NspV TTCGAA 1 cut(s) 349
PceI AGGCCT 1 cut(s) 450
PdmI GAANNNNTTC 1 cut(s) 1071
PfeI GAWTC 9 cut(s) 27, 67, 591, 611, 663, 783, 834, 958, 1733
Pfl23II CGTACG 1 cut(s) 1679
PfoI TCCNGGA 1 cut(s) 1600
PkrI GCNGC 7 cut(s) 189, 715, 802, 1426, 1431, 1591, 1631
PleI GAGTC 3 cut(s) 1192, 1379, 1491
PpsI GAGTC 3 cut(s) 1192, 1379, 1491
PpuMI RGGWCCY 1 cut(s) 1493
Psp124BI GAGCTC 3 cut(s) 517, 1054, 1260
Psp5II RGGWCCY 1 cut(s) 1493
Psp6I CCWGG 2 cut(s) 62, 1600
PspGI CCWGG 2 cut(s) 62, 1600
PspLI CGTACG 1 cut(s) 1679
PspN4I GGNNCC 2 cut(s) 166, 1495
PspPI GGNCC 2 cut(s) 692, 1493
PspPPI RGGWCCY 1 cut(s) 1493
PstNI CAGNNNCTG 1 cut(s) 1412
PsuI RGATCY 2 cut(s) 742, 1294
RsaI GTAC 2 cut(s) 1646, 1681
RsaNI GTAC 2 cut(s) 1645, 1680
RseI CAYNNNNRTG 1 cut(s) 1502
SacI GAGCTC 3 cut(s) 517, 1054, 1260
SaqAI TTAA 4 cut(s) 42, 531, 1125, 1302
SatI GCNGC 7 cut(s) 188, 714, 801, 1425, 1430, 1590, 1630
Sau3AI GATC 7 cut(s) 46, 84, 409, 437, 742, 1294, 1350
Sau96I GGNCC 2 cut(s) 692, 1493
SchI GAGTC 3 cut(s) 1192, 1379, 1492
ScrFI CCNGG 3 cut(s) 64, 540, 1602
SduI GDGCHC 3 cut(s) 517, 1054, 1260
SfaNI GCATC 3 cut(s) 134, 571, 1558
SfuI TTCGAA 1 cut(s) 349
SinI GGWCC 1 cut(s) 1493
SmiMI CAYNNNNRTG 1 cut(s) 1502
SmlI CTYRAG 1 cut(s) 1248
SmoI CTYRAG 1 cut(s) 1248
SpeI ACTAGT 1 cut(s) 212
SseBI AGGCCT 1 cut(s) 450
SsiI CCGC 3 cut(s) 714, 801, 1531
SspMI CTAG 6 cut(s) 213, 300, 417, 746, 762, 1445
SstI GAGCTC 3 cut(s) 517, 1054, 1260
StuI AGGCCT 1 cut(s) 450
StyD4I CCNGG 3 cut(s) 62, 538, 1600
StyI CCWWGG 2 cut(s) 768, 1105
TaaI ACNGT 5 cut(s) 319, 557, 604, 1463, 1526
TaiI ACGT 1 cut(s) 1279
TaqI TCGA 5 cut(s) 21, 349, 893, 956, 1353
TauI GCSGC 2 cut(s) 716, 803
TfiI GAWTC 9 cut(s) 27, 67, 591, 611, 663, 783, 834, 958, 1733
Tru1I TTAA 4 cut(s) 42, 531, 1125, 1302
Tru9I TTAA 4 cut(s) 42, 531, 1125, 1302
TscAI CASTG 7 cut(s) 19, 94, 783, 844, 1200, 1575, 1640
TseFI GTSAC 1 cut(s) 1520
TseI GCWGC 5 cut(s) 187, 1424, 1429, 1589, 1629
Tsp45I GTSAC 1 cut(s) 1520
TspDTI ATGAA 4 cut(s) 663, 1037, 1080, 1708
TspGWI ACGGA 2 cut(s) 584, 1639
TspRI CASTG 7 cut(s) 19, 94, 783, 844, 1200, 1575, 1640
VpaK11BI GGWCC 1 cut(s) 1493
XapI RAATTY 3 cut(s) 7, 226, 473
XmiI GTMKAC 2 cut(s) 631, 1653
XmnI GAANNNNTTC 1 cut(s) 1071
XspI CTAG 6 cut(s) 213, 300, 417, 746, 762, 1445
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.