Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0007619

Physical Location & Seq

Genomic Coordinates Forward (+)

47491378 .. 47492428

Gene Structure 1051 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ20155

Sequence Viewer

CDS Protein Promoter (2k)

Length: 351 bp

ATGCTGGCTTGGTTTCTAGAATCTAGGTCTTACTGTAAAAAGATTGTCTTTCAATTCACCGAAGCTGAGTGTCTCAAGATTGATGTAAAAGAGAAGAAAGTCTATTGCCAATCTAATTTAGAGAATGGGGAAAAAGAAATTTTAGTGGACTACGACTACCTTGTAATATTTGTGGGAGCAAATGTTAATACATTCAATACTCCTGGTGTGATGGAGAACTGCCATTTCTTGAAGGAAGTAGAAGATGCCCAGAAGATACGAAGAACTGTTATTGAATGCTTTGAAAAGGCTAGCCTGCCAACTATAAATGATGAGGAGAAGGAGAAAATTCTTCATTTTGCCGTTGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003954 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005758 GO:0006091 GO:0006116 GO:0006119 GO:0006139 GO:0006163 GO:0006725 GO:0006732 GO:0006733 GO:0006734 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008137 GO:0008150 GO:0008152 GO:0009117 GO:0009123 GO:0009126 GO:0009141 GO:0009144 GO:0009150 GO:0009161 GO:0009167 GO:0009199 GO:0009205 GO:0009259 GO:0009987 GO:0015980 GO:0016020 GO:0016310 GO:0016491 GO:0016651 GO:0016655 GO:0017144 GO:0019362 GO:0019637 GO:0019674 GO:0019693 GO:0019866 GO:0022900 GO:0022904 GO:0031090 GO:0031966 GO:0031967 GO:0031970 GO:0031974 GO:0031975 GO:0034641 GO:0042773 GO:0042775 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044237 GO:0044238 GO:0044281 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0045333 GO:0046034 GO:0046483 GO:0046496 GO:0050136 GO:0051186 GO:0055086 GO:0055114 GO:0070013 GO:0071704 GO:0072521 GO:0072524 GO:1901135 GO:1901360 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EF-hand_1 Pyr_redox_2

Protein Analysis

116

Amino Acids

13.55

Weight (kDa)

5.09

Isoelectric Point (pI)

41.2

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pyr_redox_2	PF07992	16 - 90	1.5e-09	Pyridine nucleotide-disulphide oxidoreductase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007619)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G05020 AT4G05020 AT4G21490 AT4G21490
fragaria_vesca	FvH4_3g03960 FvH4_3g03960 FvH4_3g03960
malus_domestica	MD05G1325700.v1.1 MD10G1303600.v1.1
prunus_persica	Prupe.4G037100_v2.0.a1
pyrus_communis	pycom05g29980 pycom05g29990 pycom10g25610
rosa_chinensis	RchiOBHm_Chr5g0006291 RchiOBHm_Chr7g0225061
rosa_laevigata	RLG00000031367
rosa_multiflora	Rmu_sc0009466.1_g000004
rosa_roxburghii	Rroxscaffold_1G00069700
rosa_rugosa	Rorug04G0420800
rosa_samantha	Rh5AG048600 Rh5BG047700 Rh5CG056100 Rh5DG046900
rosa_wichuraiana	Rw5G004850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	2 cut(s)	138, 327
AgsI	TTSAA	5 cut(s)	53, 196, 232, 275, 284
AjnI	CCWGG	1 cut(s)	202
AluBI	AGCT	1 cut(s)	65
AluI	AGCT	1 cut(s)	65
Alw26I	GTCTC	1 cut(s)	77
ApoI	RAATTY	2 cut(s)	138, 327
AsuHPI	GGTGA	1 cut(s)	49
AsuNHI	GCTAGC	1 cut(s)	290
BccI	CCATC	1 cut(s)	205
BceAI	ACGGC	1 cut(s)	326
BciT130I	CCWGG	1 cut(s)	204
BcoDI	GTCTC	1 cut(s)	77
BfaI	CTAG	3 cut(s)	17, 24, 291
Bme1390I	CCNGG	1 cut(s)	204
BmrFI	CCNGG	1 cut(s)	204
BmsI	GCATC	1 cut(s)	235
BmtI	GCTAGC	1 cut(s)	294
BpuEI	CTTGAG	1 cut(s)	59
BsaXI	ACNNNNNCTCC	2 cut(s)	168, 198
BseBI	CCWGG	1 cut(s)	204
BseMII	CTCAG	1 cut(s)	57
BseRI	GAGGAG	1 cut(s)	329
BsmAI	GTCTC	1 cut(s)	77
BsmI	GAATGC	1 cut(s)	281
BspCNI	CTCAG	1 cut(s)	58
BspOI	GCTAGC	1 cut(s)	294
Bst2UI	CCWGG	1 cut(s)	204
Bst4CI	ACNGT	2 cut(s)	35, 268
BstC8I	GCNNGC	3 cut(s)	6, 292, 296
BstDEI	CTNAG	1 cut(s)	66
BstMAI	GTCTC	1 cut(s)	77
BstNI	CCWGG	1 cut(s)	204
BstSCI	CCNGG	1 cut(s)	202
Cac8I	GCNNGC	3 cut(s)	6, 292, 296
CviJI	RGCY	4 cut(s)	8, 65, 290, 294
CviKI_1	RGCY	4 cut(s)	8, 65, 290, 294
DdeI	CTNAG	1 cut(s)	66
EcoRII	CCWGG	1 cut(s)	202
FaiI	YATR	1 cut(s)	305
FalI	AAGNNNNNCTT	2 cut(s)	32, 64
FspBI	CTAG	3 cut(s)	17, 24, 291
HinfI	GANTC	1 cut(s)	20
HphI	GGTGA	1 cut(s)	49
Hpy166II	GTNNAC	1 cut(s)	148
Hpy188III	TCNNGA	3 cut(s)	17, 76, 229
Hpy8I	GTNNAC	1 cut(s)	148
HpyAV	CCTTC	2 cut(s)	226, 313
HpyCH4III	ACNGT	2 cut(s)	35, 268
HpyF3I	CTNAG	1 cut(s)	66
LmnI	GCTCC	1 cut(s)	176
LpnPI	CCDG	4 cut(s)	189, 216, 263, 308
LweI	GCATC	1 cut(s)	235
MaeI	CTAG	3 cut(s)	17, 24, 291
MboII	GAAGA	5 cut(s)	106, 254, 265, 273, 323
MluCI	AATT	4 cut(s)	53, 115, 138, 327
MnlI	CCTC	1 cut(s)	307
MseI	TTAA	1 cut(s)	186
MspR9I	CCNGG	1 cut(s)	204
Mva1269I	GAATGC	1 cut(s)	281
MvaI	CCWGG	1 cut(s)	204
NheI	GCTAGC	1 cut(s)	290
PctI	GAATGC	1 cut(s)	281
PfeI	GAWTC	1 cut(s)	20
Psp6I	CCWGG	1 cut(s)	202
PspGI	CCWGG	1 cut(s)	202
SaqAI	TTAA	1 cut(s)	186
ScrFI	CCNGG	1 cut(s)	204
SetI	ASST	3 cut(s)	29, 67, 162
SfaNI	GCATC	1 cut(s)	235
SmlI	CTYRAG	1 cut(s)	74
SmoI	CTYRAG	1 cut(s)	74
Sse9I	AATT	4 cut(s)	53, 115, 138, 327
SspI	AATATT	1 cut(s)	168
SspMI	CTAG	3 cut(s)	17, 24, 291
StyD4I	CCNGG	1 cut(s)	202
TaaI	ACNGT	2 cut(s)	35, 268
TasI	AATT	4 cut(s)	53, 115, 138, 327
TfiI	GAWTC	1 cut(s)	20
Tru1I	TTAA	1 cut(s)	186
Tru9I	TTAA	1 cut(s)	186
TspDTI	ATGAA	1 cut(s)	323
XapI	RAATTY	2 cut(s)	138, 327
XbaI	TCTAGA	1 cut(s)	16
XspI	CTAG	3 cut(s)	17, 24, 291

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.