Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0007619

Physical Location & Seq

Genomic Coordinates Reverse (-)

58081087 .. 58081281

Gene Structure 195 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0420800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 195 bp

ATGGTGACAACATCTGTGGGATCATCAGTTTTGGGGGCTTCTTATCCGCCTTCTACCGGTGAGTTTGCAGCAAATAACCTCAATGACATGAAAGACGTTCTCCGGCTTCTATCAGCATACGGAGCACCGCTGATGATCAATGTCTATCCATACTATGCATATGCTGCCGACCGAAGCCACGTTCCCTTGGACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003954 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005758 GO:0006091 GO:0006116 GO:0006119 GO:0006139 GO:0006163 GO:0006725 GO:0006732 GO:0006733 GO:0006734 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008137 GO:0008150 GO:0008152 GO:0009117 GO:0009123 GO:0009126 GO:0009141 GO:0009144 GO:0009150 GO:0009161 GO:0009167 GO:0009199 GO:0009205 GO:0009259 GO:0009987 GO:0015980 GO:0016020 GO:0016310 GO:0016491 GO:0016651 GO:0016655 GO:0017144 GO:0019362 GO:0019637 GO:0019674 GO:0019693 GO:0019866 GO:0022900 GO:0022904 GO:0031090 GO:0031966 GO:0031967 GO:0031970 GO:0031974 GO:0031975 GO:0034641 GO:0042773 GO:0042775 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044237 GO:0044238 GO:0044281 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0045333 GO:0046034 GO:0046483 GO:0046496 GO:0050136 GO:0051186 GO:0055086 GO:0055114 GO:0070013 GO:0071704 GO:0072521 GO:0072524 GO:1901135 GO:1901360 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EF-hand_1 Pyr_redox_2

Protein Analysis

64

Amino Acids

6.86

Weight (kDa)

4.89

Isoelectric Point (pI)

35.13

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro_17	PF00332	2 - 63	2e-09	Glycosyl hydrolases family 17

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007619)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G05020 AT4G05020 AT4G21490 AT4G21490
fragaria_vesca	FvH4_3g03960 FvH4_3g03960 FvH4_3g03960
malus_domestica	MD05G1325700.v1.1 MD10G1303600.v1.1
prunus_persica	Prupe.4G037100_v2.0.a1
pyrus_communis	pycom05g29980 pycom05g29990 pycom10g25610
rosa_chinensis	RchiOBHm_Chr5g0006291 RchiOBHm_Chr7g0225061
rosa_laevigata	RLG00000031367
rosa_multiflora	Rmu_sc0009466.1_g000004
rosa_roxburghii	Rroxscaffold_1G00069700
rosa_rugosa	Rorug04G0420800
rosa_samantha	Rh5AG048600 Rh5BG047700 Rh5CG056100 Rh5DG046900
rosa_wichuraiana	Rw5G004850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	47, 128
AclWI	GGATC	1 cut(s)	28
AfiI	CCNNNNNNNGG	1 cut(s)	56
AgeI	ACCGGT	1 cut(s)	56
Alw21I	GWGCWC	1 cut(s)	127
AlwI	GGATC	1 cut(s)	28
ApeKI	GCWGC	2 cut(s)	68, 164
AsiGI	ACCGGT	1 cut(s)	56
AsuHPI	GGTGA	2 cut(s)	16, 71
Bbv12I	GWGCWC	1 cut(s)	127
BbvI	GCAGC	2 cut(s)	80, 151
BclI	TGATCA	1 cut(s)	135
BisI	GCNGC	2 cut(s)	69, 165
BlsI	GCNGC	2 cut(s)	70, 166
BsaJI	CCNNGG	1 cut(s)	186
BsaWI	WCCGGW	1 cut(s)	56
Bsc4I	CCNNNNNNNGG	1 cut(s)	56
Bse118I	RCCGGY	1 cut(s)	56
BseDI	CCNNGG	1 cut(s)	186
BseLI	CCNNNNNNNGG	1 cut(s)	56
BseXI	GCAGC	2 cut(s)	80, 151
Bsh1285I	CGRYCG	1 cut(s)	172
BshTI	ACCGGT	1 cut(s)	56
BsiEI	CGRYCG	1 cut(s)	172
BsiHKAI	GWGCWC	1 cut(s)	127
BsiSI	CCGG	2 cut(s)	57, 103
BslI	CCNNNNNNNGG	1 cut(s)	56
Bsp1286I	GDGCHC	1 cut(s)	127
Bsp143I	GATC	2 cut(s)	20, 135
BspACI	CCGC	2 cut(s)	47, 128
BspPI	GGATC	1 cut(s)	28
BsrFI	RCCGGY	1 cut(s)	56
BssAI	RCCGGY	1 cut(s)	56
BssECI	CCNNGG	1 cut(s)	186
BssMI	GATC	2 cut(s)	20, 135
BssT1I	CCWWGG	1 cut(s)	186
BstAPI	GCANNNNNTGC	1 cut(s)	164
BstKTI	GATC	2 cut(s)	23, 138
BstMBI	GATC	2 cut(s)	20, 135
BstMCI	CGRYCG	1 cut(s)	172
BstMWI	GCNNNNNNNGC	2 cut(s)	122, 164
BstV1I	GCAGC	2 cut(s)	80, 151
Cfr10I	RCCGGY	1 cut(s)	56
CspAI	ACCGGT	1 cut(s)	56
CspCI	CAANNNNNGTGG	1 cut(s)	32
CviAII	CATG	1 cut(s)	88
CviJI	RGCY	3 cut(s)	38, 106, 177
CviKI_1	RGCY	3 cut(s)	38, 106, 177
DpnI	GATC	2 cut(s)	22, 137
DpnII	GATC	2 cut(s)	20, 135
EciI	GGCGGA	1 cut(s)	36
Eco130I	CCWWGG	1 cut(s)	186
EcoT14I	CCWWGG	1 cut(s)	186
EcoT22I	ATGCAT	1 cut(s)	160
ErhI	CCWWGG	1 cut(s)	186
FaeI	CATG	1 cut(s)	91
FaiI	YATR	6 cut(s)	89, 118, 151, 156, 160, 162
FatI	CATG	1 cut(s)	87
FauNDI	CATATG	1 cut(s)	160
FbaI	TGATCA	1 cut(s)	135
Fnu4HI	GCNGC	2 cut(s)	69, 165
Fsp4HI	GCNGC	2 cut(s)	69, 165
GluI	GCNGC	2 cut(s)	69, 165
HapII	CCGG	2 cut(s)	57, 103
Hin1II	CATG	1 cut(s)	91
HpaII	CCGG	2 cut(s)	57, 103
HphI	GGTGA	2 cut(s)	16, 71
HpyAV	CCTTC	1 cut(s)	60
HpyCH4IV	ACGT	2 cut(s)	96, 180
HpyCH4V	TGCA	2 cut(s)	68, 158
HpyF10VI	GCNNNNNNNGC	2 cut(s)	122, 164
HpySE526I	ACGT	2 cut(s)	96, 180
Hsp92II	CATG	1 cut(s)	91
Ksp22I	TGATCA	1 cut(s)	135
Kzo9I	GATC	2 cut(s)	20, 135
LmnI	GCTCC	1 cut(s)	122
LpnPI	CCDG	2 cut(s)	70, 116
Lsp1109I	GCAGC	2 cut(s)	80, 151
MaeII	ACGT	2 cut(s)	96, 180
MaeIII	GTNAC	1 cut(s)	4
MalI	GATC	2 cut(s)	22, 137
MboI	GATC	2 cut(s)	20, 135
MhlI	GDGCHC	1 cut(s)	127
MnlI	CCTC	1 cut(s)	89
Mph1103I	ATGCAT	1 cut(s)	160
MspA1I	CMGCKG	1 cut(s)	130
MspI	CCGG	2 cut(s)	57, 103
MwoI	GCNNNNNNNGC	2 cut(s)	122, 164
NdeI	CATATG	1 cut(s)	160
NdeII	GATC	2 cut(s)	20, 135
NlaIII	CATG	1 cut(s)	91
NmuCI	GTSAC	1 cut(s)	4
NsiI	ATGCAT	1 cut(s)	160
PinAI	ACCGGT	1 cut(s)	56
PkrI	GCNGC	2 cut(s)	70, 166
SatI	GCNGC	2 cut(s)	69, 165
Sau3AI	GATC	2 cut(s)	20, 135
SduI	GDGCHC	1 cut(s)	127
SetI	ASST	3 cut(s)	81, 99, 183
SgeI	CNNG	4 cut(s)	69, 100, 115, 191
SsiI	CCGC	2 cut(s)	47, 128
StyI	CCWWGG	1 cut(s)	186
TaiI	ACGT	2 cut(s)	99, 183
TaqII	GACCGA	1 cut(s)	186
TseFI	GTSAC	1 cut(s)	4
TseI	GCWGC	2 cut(s)	68, 164
Tsp45I	GTSAC	1 cut(s)	4
TspDTI	ATGAA	1 cut(s)	104
TspGWI	ACGGA	1 cut(s)	135
Zsp2I	ATGCAT	1 cut(s)	160

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.