Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0007619

Physical Location & Seq

Genomic Coordinates Forward (+)

30263388 .. 30265509

Gene Structure 2122 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom05g29980.5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 912 bp

ATGCGAGGTTTCGCTCTCTTCGACCGAGTTTCTAAAGCGTTTCATGACTATCCTAAGGCTTCCAAAATGCTCGTCGTCGTCGCCGTCAGTGGTGGCGGCTATGTGGCTTACGCTGAGGCAAACTCTGAGCCAAAACTGATCAGCAGCGCGCCTGGCATAGATCAAGGGGAAAATAAGAAAAAGAAGATCGTCGTACTTGGAACTGGCTGGGCTGGAACTAGTTTCTTAAGGAATCTGAAAAATCCCAACTATGAGGTTCAGGTCATATCACCTCGGAATTACTTTGCCTTCACCCCTCTGCTACCAAGTGTTACCTGTGGCACAGTGGAAGCTCGCAGCATTGTTGAACCAATTCGAAACATTGTTAGAAAGAAAAATGTAGATGTTCAATTCAGTGAAGCCGCGTGCCTCAAGATCGACGCACAAAACAAGAAAATCTATTGCCGATCTAATCTGGAAAACAATTTGAACGGACAAGAAGAGTTCGTTGTGGATTATGACTACCTTATTGTAGCTGTGGGAGCCAATGTTAACACATTCAATACTCCTGGTGTGATGGAGAACTGCCACTTTTTGAAGGAAGTAGAAGATGCTCAAAAAATTCGAAAAACTGTTATTGACTGCTTTGAAAGAGCAAGCCTTCCAACTGTAAGCGATGAGGAGAAGAAGCGAATTCTTCATTTTGCTGTTGTTGGAGGTGGTCCAACTGGTGTGGAATTTGCTGCAGAACTTCATGATTATGTCAATGAGGATTTGGTCAAATTGTATCCCGGGGTCAAGGAACTAGTTAAAATTACACTTCTCGAAGCTGGAGATCATATTCTGAATATGTTTGACAAAAGAATCACAGCTTTTGCTGAAGAAAAATTTCAAAGAGACGGTATTGATCGAAAACAGGATCCATGGTTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003954 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005758 GO:0006091 GO:0006116 GO:0006119 GO:0006139 GO:0006163 GO:0006725 GO:0006732 GO:0006733 GO:0006734 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008137 GO:0008150 GO:0008152 GO:0009117 GO:0009123 GO:0009126 GO:0009141 GO:0009144 GO:0009150 GO:0009161 GO:0009167 GO:0009199 GO:0009205 GO:0009259 GO:0009987 GO:0015980 GO:0016020 GO:0016310 GO:0016491 GO:0016651 GO:0016655 GO:0017144 GO:0019362 GO:0019637 GO:0019674 GO:0019693 GO:0019866 GO:0022900 GO:0022904 GO:0031090 GO:0031966 GO:0031967 GO:0031970 GO:0031974 GO:0031975 GO:0034641 GO:0042773 GO:0042775 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044237 GO:0044238 GO:0044281 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0045333 GO:0046034 GO:0046483 GO:0046496 GO:0050136 GO:0051186 GO:0055086 GO:0055114 GO:0070013 GO:0071704 GO:0072521 GO:0072524 GO:1901135 GO:1901360 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EF-hand_1 Pyr_redox_2

Protein Analysis

304

Amino Acids

33.85

Weight (kDa)

6.55

Isoelectric Point (pI)

32.98

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007619)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G05020 AT4G05020 AT4G21490 AT4G21490
fragaria_vesca	FvH4_3g03960 FvH4_3g03960 FvH4_3g03960
malus_domestica	MD05G1325700.v1.1 MD10G1303600.v1.1
prunus_persica	Prupe.4G037100_v2.0.a1
pyrus_communis	pycom05g29980 pycom05g29990 pycom10g25610
rosa_chinensis	RchiOBHm_Chr5g0006291 RchiOBHm_Chr7g0225061
rosa_laevigata	RLG00000031367
rosa_multiflora	Rmu_sc0009466.1_g000004
rosa_roxburghii	Rroxscaffold_1G00069700
rosa_rugosa	Rorug04G0420800
rosa_samantha	Rh5AG048600 Rh5BG047700 Rh5CG056100 Rh5DG046900
rosa_wichuraiana	Rw5G004850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	149, 404
AciI	CCGC	2 cut(s)	96, 402
AclWI	GGATC	2 cut(s)	893, 906
AcsI	RAATTY	4 cut(s)	600, 672, 716, 866
AcuI	CTGAAG	1 cut(s)	879
AfaI	GTAC	1 cut(s)	195
AflII	CTTAAG	1 cut(s)	226
AgsI	TTSAA	7 cut(s)	347, 389, 469, 541, 577, 629, 872
AhlI	ACTAGT	2 cut(s)	218, 784
AjnI	CCWGG	2 cut(s)	151, 547
AluBI	AGCT	4 cut(s)	332, 515, 809, 851
AluI	AGCT	4 cut(s)	332, 515, 809, 851
Alw26I	GTCTC	1 cut(s)	870
AlwI	GGATC	2 cut(s)	893, 906
Ama87I	CYCGRG	1 cut(s)	770
ApeKI	GCWGC	3 cut(s)	144, 336, 722
ApoI	RAATTY	4 cut(s)	600, 672, 716, 866
ArsI	GACNNNNNNTTYG	2 cut(s)	57, 89
Asp700I	GAANNNNTTC	2 cut(s)	351, 867
AspLEI	GCGC	2 cut(s)	149, 151
AspS9I	GGNCC	1 cut(s)	701
AsuC2I	CCSGG	2 cut(s)	771, 772
AsuHPI	GGTGA	2 cut(s)	261, 283
AsuII	TTCGAA	2 cut(s)	355, 604
AvaI	CYCGRG	1 cut(s)	770
AvaII	GGWCC	1 cut(s)	701
AxyI	CCTNAGG	1 cut(s)	54
BamHI	GGATCC	1 cut(s)	898
BbvCI	CCTCAGC	1 cut(s)	114
BbvI	GCAGC	3 cut(s)	156, 348, 709
BccI	CCATC	1 cut(s)	550
BceAI	ACGGC	1 cut(s)	68
BciT130I	CCWGG	2 cut(s)	153, 549
BciVI	GTATCC	1 cut(s)	777
BclI	TGATCA	1 cut(s)	138
BcnI	CCSGG	2 cut(s)	771, 772
BcoDI	GTCTC	1 cut(s)	870
BcuI	ACTAGT	2 cut(s)	218, 784
BfaI	CTAG	2 cut(s)	219, 785
BfmI	CTRYAG	1 cut(s)	723
BfrI	CTTAAG	1 cut(s)	226
BfuI	GTATCC	1 cut(s)	777
BisI	GCNGC	5 cut(s)	97, 145, 337, 402, 723
BlsI	GCNGC	5 cut(s)	98, 146, 338, 403, 724
Bme1390I	CCNGG	4 cut(s)	153, 549, 771, 772
Bme18I	GGWCC	1 cut(s)	701
BmeT110I	CYCGRG	1 cut(s)	770
BmgT120I	GGNCC	1 cut(s)	701
BmiI	GGNNCC	2 cut(s)	523, 900
BmrFI	CCNGG	4 cut(s)	153, 549, 771, 772
BmsI	GCATC	1 cut(s)	580
BplI	GAGNNNNNCTC	2 cut(s)	107, 139
BpmI	CTGGAG	1 cut(s)	831
Bpu10I	CCTNAGC	1 cut(s)	114
Bpu14I	TTCGAA	2 cut(s)	355, 604
BpuEI	CTTGAG	1 cut(s)	395
BpuMI	CCSGG	2 cut(s)	771, 772
BsaJI	CCNNGG	4 cut(s)	272, 770, 771, 902
BsaXI	ACNNNNNCTCC	2 cut(s)	513, 543
Bse1I	ACTGG	2 cut(s)	208, 712
Bse21I	CCTNAGG	1 cut(s)	54
BseBI	CCWGG	2 cut(s)	153, 549
BseDI	CCNNGG	4 cut(s)	272, 770, 771, 902
BseMII	CTCAG	2 cut(s)	105, 117
BseNI	ACTGG	2 cut(s)	208, 712
BsePI	GCGCGC	1 cut(s)	147
BseRI	GAGGAG	1 cut(s)	674
BseXI	GCAGC	3 cut(s)	156, 348, 709
BseYI	CCCAGC	1 cut(s)	207
Bsh1236I	CGCG	2 cut(s)	149, 404
Bsh1285I	CGRYCG	1 cut(s)	25
BsiEI	CGRYCG	1 cut(s)	25
BsiHKCI	CYCGRG	1 cut(s)	770
BsiSI	CCGG	1 cut(s)	771
BsmAI	GTCTC	1 cut(s)	870
BsmBI	CGTCTC	1 cut(s)	870
BsoBI	CYCGRG	1 cut(s)	770
Bsp119I	TTCGAA	2 cut(s)	355, 604
Bsp143I	GATC	8 cut(s)	138, 160, 186, 414, 446, 814, 886, 898
Bsp19I	CCATGG	1 cut(s)	902
BspACI	CCGC	2 cut(s)	96, 402
BspCNI	CTCAG	2 cut(s)	106, 118
BspFNI	CGCG	2 cut(s)	149, 404
BspHI	TCATGA	2 cut(s)	43, 733
BspLI	GGNNCC	2 cut(s)	523, 900
BspMAI	CTGCAG	1 cut(s)	727
BspPI	GGATC	2 cut(s)	893, 906
BspT104I	TTCGAA	2 cut(s)	355, 604
BspTI	CTTAAG	1 cut(s)	226
BsrI	ACTGG	2 cut(s)	208, 712
BssECI	CCNNGG	4 cut(s)	272, 770, 771, 902
BssHII	GCGCGC	1 cut(s)	147
BssMI	GATC	8 cut(s)	138, 160, 186, 414, 446, 814, 886, 898
BssT1I	CCWWGG	1 cut(s)	902
Bst2UI	CCWGG	2 cut(s)	153, 549
Bst4CI	ACNGT	4 cut(s)	325, 613, 649, 881
Bst6I	CTCTTC	2 cut(s)	23, 474
BstAFI	CTTAAG	1 cut(s)	226
BstBI	TTCGAA	2 cut(s)	355, 604
BstC8I	GCNNGC	4 cut(s)	149, 334, 406, 637
BstDEI	CTNAG	3 cut(s)	54, 114, 126
BstDSI	CCRYGG	1 cut(s)	902
BstFNI	CGCG	2 cut(s)	149, 404
BstHHI	GCGC	2 cut(s)	149, 151
BstKTI	GATC	8 cut(s)	141, 163, 189, 417, 449, 817, 889, 901
BstMAI	GTCTC	1 cut(s)	870
BstMBI	GATC	8 cut(s)	138, 160, 186, 414, 446, 814, 886, 898
BstMCI	CGRYCG	1 cut(s)	25
BstMWI	GCNNNNNNNGC	2 cut(s)	153, 521
BstNI	CCWGG	2 cut(s)	153, 549
BstSCI	CCNGG	4 cut(s)	151, 547, 769, 770
BstSFI	CTRYAG	1 cut(s)	723
BstUI	CGCG	2 cut(s)	149, 404
BstV1I	GCAGC	3 cut(s)	156, 348, 709
BstX2I	RGATCY	1 cut(s)	898
BstYI	RGATCY	1 cut(s)	898
Bsu36I	CCTNAGG	1 cut(s)	54
BsuI	GTATCC	1 cut(s)	777
BtgI	CCRYGG	1 cut(s)	902
BtgZI	GCGATG	1 cut(s)	669
BtsIMutI	CAGTG	3 cut(s)	94, 330, 400
Cac8I	GCNNGC	4 cut(s)	149, 334, 406, 637
CciI	TCATGA	2 cut(s)	43, 733
CfoI	GCGC	2 cut(s)	149, 151
Cfr13I	GGNCC	1 cut(s)	701
Cfr9I	CCCGGG	1 cut(s)	770
CseI	GACGC	1 cut(s)	428
Csp6I	GTAC	1 cut(s)	194
CspCI	CAANNNNNGTGG	2 cut(s)	693, 728
CviAII	CATG	3 cut(s)	44, 734, 903
CviQI	GTAC	1 cut(s)	194
DdeI	CTNAG	3 cut(s)	54, 114, 126
DpnI	GATC	8 cut(s)	140, 162, 188, 416, 448, 816, 888, 900
DpnII	GATC	8 cut(s)	138, 160, 186, 414, 446, 814, 886, 898
Eam1104I	CTCTTC	2 cut(s)	23, 474
EarI	CTCTTC	2 cut(s)	23, 474
Eco130I	CCWWGG	1 cut(s)	902
Eco47I	GGWCC	1 cut(s)	701
Eco57I	CTGAAG	1 cut(s)	879
Eco81I	CCTNAGG	1 cut(s)	54
Eco88I	CYCGRG	1 cut(s)	770
EcoRI	GAATTC	1 cut(s)	672
EcoRII	CCWGG	2 cut(s)	151, 547
EcoT14I	CCWWGG	1 cut(s)	902
ErhI	CCWWGG	1 cut(s)	902
Esp3I	CGTCTC	1 cut(s)	870
FaeI	CATG	3 cut(s)	47, 737, 906
FatI	CATG	3 cut(s)	43, 733, 902
FbaI	TGATCA	1 cut(s)	138
Fnu4HI	GCNGC	5 cut(s)	97, 145, 337, 402, 723
Fsp4HI	GCNGC	5 cut(s)	97, 145, 337, 402, 723
FspBI	CTAG	2 cut(s)	219, 785
GlaI	GCGC	2 cut(s)	148, 150
GluI	GCNGC	5 cut(s)	97, 145, 337, 402, 723
GsaI	CCCAGC	1 cut(s)	211
GsuI	CTGGAG	1 cut(s)	831
HapII	CCGG	1 cut(s)	771
HgaI	GACGC	1 cut(s)	428
HhaI	GCGC	2 cut(s)	149, 151
Hin1II	CATG	3 cut(s)	47, 737, 906
Hin6I	GCGC	2 cut(s)	147, 149
HinP1I	GCGC	2 cut(s)	147, 149
HincII	GTYRAC	1 cut(s)	532
HindII	GTYRAC	1 cut(s)	532
HinfI	GANTC	2 cut(s)	232, 843
HpaI	GTTAAC	1 cut(s)	532
HpaII	CCGG	1 cut(s)	771
HphI	GGTGA	2 cut(s)	261, 283
Hpy166II	GTNNAC	1 cut(s)	532
Hpy188I	TCNGA	4 cut(s)	127, 237, 276, 825
Hpy188III	TCNNGA	5 cut(s)	44, 412, 455, 734, 803
Hpy8I	GTNNAC	1 cut(s)	532
Hpy99I	CGWCG	5 cut(s)	77, 80, 83, 194, 422
HpyAV	CCTTC	3 cut(s)	298, 571, 650
HpyCH4III	ACNGT	4 cut(s)	325, 613, 649, 881
HpyCH4V	TGCA	1 cut(s)	725
HpyF10VI	GCNNNNNNNGC	2 cut(s)	153, 521
HpyF3I	CTNAG	3 cut(s)	54, 114, 126
Hsp92II	CATG	3 cut(s)	47, 737, 906
HspAI	GCGC	2 cut(s)	147, 149
Ksp22I	TGATCA	1 cut(s)	138
KspAI	GTTAAC	1 cut(s)	532
Kzo9I	GATC	8 cut(s)	138, 160, 186, 414, 446, 814, 886, 898
LmnI	GCTCC	1 cut(s)	521
Lsp1109I	GCAGC	3 cut(s)	156, 348, 709
LweI	GCATC	1 cut(s)	580
MaeI	CTAG	2 cut(s)	219, 785
MaeIII	GTNAC	1 cut(s)	310
MalI	GATC	8 cut(s)	140, 162, 188, 416, 448, 816, 888, 900
MboI	GATC	8 cut(s)	138, 160, 186, 414, 446, 814, 886, 898
MboII	GAAGA	7 cut(s)	10, 196, 491, 599, 668, 676, 872
MflI	RGATCY	1 cut(s)	898
MmeI	TCCRAC	3 cut(s)	668, 673, 728
MnlI	CCTC	8 cut(s)	109, 247, 282, 306, 419, 652, 689, 742
MroXI	GAANNNNTTC	2 cut(s)	351, 867
MseI	TTAA	3 cut(s)	227, 531, 789
MslI	CAYNNNNRTG	2 cut(s)	738, 907
MspCI	CTTAAG	1 cut(s)	226
MspI	CCGG	1 cut(s)	771
MspR9I	CCNGG	4 cut(s)	153, 549, 771, 772
MvaI	CCWGG	2 cut(s)	153, 549
MvnI	CGCG	2 cut(s)	149, 404
MwoI	GCNNNNNNNGC	2 cut(s)	153, 521
NciI	CCSGG	2 cut(s)	771, 772
NcoI	CCATGG	1 cut(s)	902
NdeII	GATC	8 cut(s)	138, 160, 186, 414, 446, 814, 886, 898
NlaIII	CATG	3 cut(s)	47, 737, 906
NlaIV	GGNNCC	2 cut(s)	523, 900
NspV	TTCGAA	2 cut(s)	355, 604
PagI	TCATGA	2 cut(s)	43, 733
PauI	GCGCGC	1 cut(s)	147
PcsI	WCGNNNNNNNCGW	2 cut(s)	18, 81
PdmI	GAANNNNTTC	2 cut(s)	351, 867
PfeI	GAWTC	2 cut(s)	232, 843
PkrI	GCNGC	5 cut(s)	98, 146, 338, 403, 724
Psp6I	CCWGG	2 cut(s)	151, 547
PspFI	CCCAGC	1 cut(s)	207
PspGI	CCWGG	2 cut(s)	151, 547
PspN4I	GGNNCC	2 cut(s)	523, 900
PspPI	GGNCC	1 cut(s)	701
PstI	CTGCAG	1 cut(s)	727
PsuI	RGATCY	1 cut(s)	898
PteI	GCGCGC	1 cut(s)	147
RsaI	GTAC	1 cut(s)	195
RsaNI	GTAC	1 cut(s)	194
RseI	CAYNNNNRTG	2 cut(s)	738, 907
SaqAI	TTAA	3 cut(s)	227, 531, 789
SatI	GCNGC	5 cut(s)	97, 145, 337, 402, 723
Sau3AI	GATC	8 cut(s)	138, 160, 186, 414, 446, 814, 886, 898
Sau96I	GGNCC	1 cut(s)	701
ScrFI	CCNGG	4 cut(s)	153, 549, 771, 772
SfaNI	GCATC	1 cut(s)	580
SfcI	CTRYAG	1 cut(s)	723
SfuI	TTCGAA	2 cut(s)	355, 604
SinI	GGWCC	1 cut(s)	701
SmaI	CCCGGG	1 cut(s)	772
SmiMI	CAYNNNNRTG	2 cut(s)	738, 907
SmlI	CTYRAG	2 cut(s)	226, 410
SmoI	CTYRAG	2 cut(s)	226, 410
SpeI	ACTAGT	2 cut(s)	218, 784
SsiI	CCGC	2 cut(s)	96, 402
SspMI	CTAG	2 cut(s)	219, 785
StyD4I	CCNGG	4 cut(s)	151, 547, 769, 770
StyI	CCWWGG	1 cut(s)	902
TaaI	ACNGT	4 cut(s)	325, 613, 649, 881
TaqI	TCGA	6 cut(s)	21, 355, 417, 604, 804, 889
TaqII	GACCGA	1 cut(s)	39
TauI	GCSGC	2 cut(s)	99, 404
TfiI	GAWTC	2 cut(s)	232, 843
Tru1I	TTAA	3 cut(s)	227, 531, 789
Tru9I	TTAA	3 cut(s)	227, 531, 789
TscAI	CASTG	3 cut(s)	94, 330, 400
TseI	GCWGC	3 cut(s)	144, 336, 722
TspDTI	ATGAA	3 cut(s)	32, 668, 722
TspGWI	ACGGA	1 cut(s)	486
TspMI	CCCGGG	1 cut(s)	770
TspRI	CASTG	3 cut(s)	94, 330, 400
Vha464I	CTTAAG	1 cut(s)	226
VpaK11BI	GGWCC	1 cut(s)	701
XapI	RAATTY	4 cut(s)	600, 672, 716, 866
XmaI	CCCGGG	1 cut(s)	770
XmnI	GAANNNNTTC	2 cut(s)	351, 867
XspI	CTAG	2 cut(s)	219, 785

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.