Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0007619

Physical Location & Seq

Genomic Coordinates Reverse (-)

3889558 .. 3891234

Gene Structure 1677 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG046900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 822 bp

ATGAAAACTGGGGAAATTTCCACCATGCCATATGGAATGGCTCTCTGGTCAACTGGTATTGGAACGCGGCCTTTCGTAAGGGATTTCATGAATCAAATTGGTCAGGCTAATAGACGTGTTCTAGCAACTGATGAATGGTTACGAGTGGAGGGATGTGACAAAGTCTATGCACTTGGTGATTGTGCCACAATCAATCAGCGAAAAGTCCTGGAAGATATCTCTGCTATATTCAGTAAGGCAGACAAGGACAAATCAGGAACACTTACAGTTCAGGAATGGAAAGAAGTCATCAATGACATTTGTGAAAGATATCCACAAGTGGAGCTTTATTTGAAGAACATGCAGATGCGCGATATTGTTGATCTTTTGAAGGAAACAAAGGGCGCTAGTGCAACCAAATCAGTGGAGCTGAACATTGAAGATTTCAAAATAGCTCTTTCTAAAGTGGATTCCCAGATGAAAATGCTTCCAGCTACAGCTCAGGTTGCAGCTCAAGAAGGTGCCTACCTTGCTAGTTGTTTCAACCGTATGGAAAAGTGTGAGAAATATCCAGAAGGTCCTCTCAGGTTTCGAGGAGAAGGTCGCCATCGGTTCCATCCCTTCAGGTACAAGCATCTTGGTCAATTTGCTCCTTTGGGAGGTGAGCAAACTGCTGCACAACTCCCTGTTCTTCCCGGTGATGGGGTGTCAATTGGCTACAGTTCCCAGTGGCTTTGGTATTCTGTTTATGCAAGCAAACAAGTTAGCTGGCGCAACAGGGGAATGGTCATTTCAGACTGGGTAAGGCGTTTCATTTTCGGAAGGGATTCTAGTCAGATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003954 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005758 GO:0006091 GO:0006116 GO:0006119 GO:0006139 GO:0006163 GO:0006725 GO:0006732 GO:0006733 GO:0006734 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008137 GO:0008150 GO:0008152 GO:0009117 GO:0009123 GO:0009126 GO:0009141 GO:0009144 GO:0009150 GO:0009161 GO:0009167 GO:0009199 GO:0009205 GO:0009259 GO:0009987 GO:0015980 GO:0016020 GO:0016310 GO:0016491 GO:0016651 GO:0016655 GO:0017144 GO:0019362 GO:0019637 GO:0019674 GO:0019693 GO:0019866 GO:0022900 GO:0022904 GO:0031090 GO:0031966 GO:0031967 GO:0031970 GO:0031974 GO:0031975 GO:0034641 GO:0042773 GO:0042775 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044237 GO:0044238 GO:0044281 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0045333 GO:0046034 GO:0046483 GO:0046496 GO:0050136 GO:0051186 GO:0055086 GO:0055114 GO:0070013 GO:0071704 GO:0072521 GO:0072524 GO:1901135 GO:1901360 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EF-hand_1 Pyr_redox_2

Protein Analysis

273

Amino Acids

31.05

Weight (kDa)

8.86

Isoelectric Point (pI)

33.54

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NDH2_C	PF22366	205 - 269	2.7e-15	NDH2 C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007619)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G05020 AT4G05020 AT4G21490 AT4G21490
fragaria_vesca	FvH4_3g03960 FvH4_3g03960 FvH4_3g03960
malus_domestica	MD05G1325700.v1.1 MD10G1303600.v1.1
prunus_persica	Prupe.4G037100_v2.0.a1
pyrus_communis	pycom05g29980 pycom05g29990 pycom10g25610
rosa_chinensis	RchiOBHm_Chr5g0006291 RchiOBHm_Chr7g0225061
rosa_laevigata	RLG00000031367
rosa_multiflora	Rmu_sc0009466.1_g000004
rosa_roxburghii	Rroxscaffold_1G00069700
rosa_rugosa	Rorug04G0420800
rosa_samantha	Rh5AG048600 Rh5BG047700 Rh5CG056100 Rh5DG046900
rosa_wichuraiana	Rw5G004850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	500
AccII	CGCG	2 cut(s)	67, 351
AciI	CCGC	1 cut(s)	67
AcsI	RAATTY	1 cut(s)	15
AcuI	CTGAAG	1 cut(s)	586
AdeI	CACNNNGTG	1 cut(s)	176
AfaI	GTAC	1 cut(s)	608
AfiI	CCNNNNNNNGG	3 cut(s)	638, 680, 681
AflIII	ACRYGT	1 cut(s)	115
AgsI	TTSAA	5 cut(s)	334, 370, 419, 427, 523
AjiI	CACGTC	1 cut(s)	116
AjnI	CCWGG	1 cut(s)	207
AluBI	AGCT	7 cut(s)	325, 409, 434, 473, 479, 491, 747
AluI	AGCT	7 cut(s)	325, 409, 434, 473, 479, 491, 747
AoxI	GGCC	1 cut(s)	68
ApeKI	GCWGC	2 cut(s)	488, 653
ApoI	RAATTY	1 cut(s)	15
Asp700I	GAANNNNTTC	1 cut(s)	805
AspLEI	GCGC	3 cut(s)	351, 386, 753
AspS9I	GGNCC	1 cut(s)	557
AsuC2I	CCSGG	1 cut(s)	675
AsuHPI	GGTGA	3 cut(s)	188, 653, 689
AvaII	GGWCC	1 cut(s)	557
BanI	GGYRCC	1 cut(s)	500
BbvI	GCAGC	2 cut(s)	500, 640
BccI	CCATC	3 cut(s)	594, 603, 674
BciT130I	CCWGG	1 cut(s)	209
BcnI	CCSGG	1 cut(s)	675
BfaI	CTAG	4 cut(s)	122, 387, 513, 810
BfmI	CTRYAG	2 cut(s)	474, 697
BfoI	RGCGCY	1 cut(s)	387
BisI	GCNGC	3 cut(s)	68, 489, 654
BlsI	GCNGC	3 cut(s)	69, 490, 655
Bme1390I	CCNGG	2 cut(s)	209, 675
Bme18I	GGWCC	1 cut(s)	557
BmgBI	CACGTC	1 cut(s)	116
BmgT120I	GGNCC	1 cut(s)	557
BmiI	GGNNCC	2 cut(s)	502, 593
BmrFI	CCNGG	2 cut(s)	209, 675
BmrI	ACTGGG	3 cut(s)	18, 700, 787
BmsI	GCATC	2 cut(s)	336, 622
BmuI	ACTGGG	3 cut(s)	18, 700, 787
Bpu10I	CCTNAGC	1 cut(s)	480
BpuEI	CTTGAG	1 cut(s)	477
BpuMI	CCSGG	1 cut(s)	675
Bsc4I	CCNNNNNNNGG	3 cut(s)	638, 680, 681
Bse1I	ACTGG	4 cut(s)	13, 58, 706, 782
BseBI	CCWGG	1 cut(s)	209
BseGI	GGATG	2 cut(s)	158, 595
BseLI	CCNNNNNNNGG	3 cut(s)	638, 680, 681
BseMII	CTCAG	2 cut(s)	494, 577
BseNI	ACTGG	4 cut(s)	13, 58, 706, 782
BseRI	GAGGAG	1 cut(s)	588
BseXI	GCAGC	2 cut(s)	500, 640
BsgI	GTGCAG	1 cut(s)	639
Bsh1236I	CGCG	2 cut(s)	67, 351
BshFI	GGCC	1 cut(s)	70
BshNI	GGYRCC	1 cut(s)	500
BsiSI	CCGG	1 cut(s)	675
BslI	CCNNNNNNNGG	3 cut(s)	638, 680, 681
BsnI	GGCC	1 cut(s)	70
Bsp143I	GATC	1 cut(s)	361
BspACI	CCGC	1 cut(s)	67
BspANI	GGCC	1 cut(s)	70
BspCNI	CTCAG	2 cut(s)	493, 576
BspFNI	CGCG	2 cut(s)	67, 351
BspHI	TCATGA	1 cut(s)	87
BspLI	GGNNCC	2 cut(s)	502, 593
BspT107I	GGYRCC	1 cut(s)	500
BsrI	ACTGG	4 cut(s)	13, 58, 706, 782
BssMI	GATC	1 cut(s)	361
Bst2UI	CCWGG	1 cut(s)	209
Bst4CI	ACNGT	3 cut(s)	268, 527, 701
BstC8I	GCNNGC	2 cut(s)	733, 749
BstDEI	CTNAG	2 cut(s)	480, 563
BstENI	CCTNNNNNAGG	1 cut(s)	636
BstF5I	GGATG	2 cut(s)	158, 595
BstFNI	CGCG	2 cut(s)	67, 351
BstH2I	RGCGCY	1 cut(s)	387
BstHHI	GCGC	3 cut(s)	351, 386, 753
BstKTI	GATC	1 cut(s)	364
BstMBI	GATC	1 cut(s)	361
BstMWI	GCNNNNNNNGC	2 cut(s)	485, 509
BstNI	CCWGG	1 cut(s)	209
BstNSI	RCATGY	1 cut(s)	343
BstSCI	CCNGG	2 cut(s)	207, 673
BstSFI	CTRYAG	2 cut(s)	474, 697
BstUI	CGCG	2 cut(s)	67, 351
BstV1I	GCAGC	2 cut(s)	500, 640
BstXI	CCANNNNNNTGG	1 cut(s)	403
BsuRI	GGCC	1 cut(s)	70
BtrI	CACGTC	1 cut(s)	116
BtsCI	GGATG	2 cut(s)	158, 595
BtsIMutI	CAGTG	2 cut(s)	408, 713
Cac8I	GCNNGC	2 cut(s)	733, 749
CciI	TCATGA	1 cut(s)	87
CfoI	GCGC	3 cut(s)	351, 386, 753
Cfr13I	GGNCC	1 cut(s)	557
Csp6I	GTAC	1 cut(s)	607
CviAII	CATG	3 cut(s)	25, 88, 340
CviQI	GTAC	1 cut(s)	607
DdeI	CTNAG	2 cut(s)	480, 563
DpnI	GATC	1 cut(s)	363
DpnII	GATC	1 cut(s)	361
DraIII	CACNNNGTG	1 cut(s)	176
Eco32I	GATATC	2 cut(s)	217, 311
Eco47I	GGWCC	1 cut(s)	557
Eco57I	CTGAAG	1 cut(s)	586
EcoNI	CCTNNNNNAGG	1 cut(s)	636
EcoO109I	RGGNCCY	1 cut(s)	557
EcoRII	CCWGG	1 cut(s)	207
EcoRV	GATATC	2 cut(s)	217, 311
FaeI	CATG	3 cut(s)	28, 91, 343
FaiI	YATR	9 cut(s)	26, 31, 33, 89, 168, 227, 341, 530, 729
FalI	AAGNNNNNCTT	2 cut(s)	309, 341
FatI	CATG	3 cut(s)	24, 87, 339
FauNDI	CATATG	1 cut(s)	31
Fnu4HI	GCNGC	3 cut(s)	68, 489, 654
FokI	GGATG	2 cut(s)	165, 582
Fsp4HI	GCNGC	3 cut(s)	68, 489, 654
FspBI	CTAG	4 cut(s)	122, 387, 513, 810
GlaI	GCGC	3 cut(s)	350, 385, 752
GluI	GCNGC	3 cut(s)	68, 489, 654
HaeII	RGCGCY	1 cut(s)	387
HaeIII	GGCC	1 cut(s)	70
HapII	CCGG	1 cut(s)	675
HhaI	GCGC	3 cut(s)	351, 386, 753
Hin1II	CATG	3 cut(s)	28, 91, 343
Hin6I	GCGC	3 cut(s)	349, 384, 751
HinP1I	GCGC	3 cut(s)	349, 384, 751
HincII	GTYRAC	1 cut(s)	51
HindII	GTYRAC	1 cut(s)	51
HinfI	GANTC	3 cut(s)	91, 449, 806
HpaII	CCGG	1 cut(s)	675
HphI	GGTGA	3 cut(s)	188, 653, 689
Hpy166II	GTNNAC	1 cut(s)	51
Hpy188I	TCNGA	3 cut(s)	775, 800, 816
Hpy188III	TCNNGA	5 cut(s)	88, 255, 272, 494, 551
Hpy8I	GTNNAC	1 cut(s)	51
HpyAV	CCTTC	6 cut(s)	364, 491, 548, 572, 610, 795
HpyCH4III	ACNGT	3 cut(s)	268, 527, 701
HpyCH4IV	ACGT	1 cut(s)	115
HpyCH4V	TGCA	6 cut(s)	170, 343, 392, 488, 656, 731
HpyF10VI	GCNNNNNNNGC	2 cut(s)	485, 509
HpyF3I	CTNAG	2 cut(s)	480, 563
HpySE526I	ACGT	1 cut(s)	115
Hsp92II	CATG	3 cut(s)	28, 91, 343
HspAI	GCGC	3 cut(s)	349, 384, 751
Kzo9I	GATC	1 cut(s)	361
LmnI	GCTCC	3 cut(s)	322, 406, 634
Lsp1109I	GCAGC	2 cut(s)	500, 640
LweI	GCATC	2 cut(s)	336, 622
MaeI	CTAG	4 cut(s)	122, 387, 513, 810
MaeII	ACGT	1 cut(s)	115
MaeIII	GTNAC	2 cut(s)	138, 155
MalI	GATC	1 cut(s)	363
MboI	GATC	1 cut(s)	361
MboII	GAAGA	4 cut(s)	224, 346, 431, 662
MfeI	CAATTG	1 cut(s)	690
MluCI	AATT	4 cut(s)	15, 96, 623, 690
MnlI	CCTC	4 cut(s)	142, 566, 570, 632
MroXI	GAANNNNTTC	1 cut(s)	805
MslI	CAYNNNNRTG	1 cut(s)	344
MspI	CCGG	1 cut(s)	675
MspR9I	CCNGG	2 cut(s)	209, 675
MunI	CAATTG	1 cut(s)	690
MvaI	CCWGG	1 cut(s)	209
MvnI	CGCG	2 cut(s)	67, 351
MwoI	GCNNNNNNNGC	2 cut(s)	485, 509
NciI	CCSGG	1 cut(s)	675
NdeI	CATATG	1 cut(s)	31
NdeII	GATC	1 cut(s)	361
NlaIII	CATG	3 cut(s)	28, 91, 343
NlaIV	GGNNCC	2 cut(s)	502, 593
NmuCI	GTSAC	1 cut(s)	155
NspI	RCATGY	1 cut(s)	343
PagI	TCATGA	1 cut(s)	87
PdmI	GAANNNNTTC	1 cut(s)	805
PfeI	GAWTC	3 cut(s)	91, 449, 806
PflFI	GACNNNGTC	1 cut(s)	161
PfoI	TCCNGGA	1 cut(s)	207
PkrI	GCNGC	3 cut(s)	69, 490, 655
PpuMI	RGGWCCY	1 cut(s)	557
Psp5II	RGGWCCY	1 cut(s)	557
Psp6I	CCWGG	1 cut(s)	207
PspGI	CCWGG	1 cut(s)	207
PspN4I	GGNNCC	2 cut(s)	502, 593
PspPI	GGNCC	1 cut(s)	557
PspPPI	RGGWCCY	1 cut(s)	557
PsyI	GACNNNGTC	1 cut(s)	161
RsaI	GTAC	1 cut(s)	608
RsaNI	GTAC	1 cut(s)	607
RseI	CAYNNNNRTG	1 cut(s)	344
SatI	GCNGC	3 cut(s)	68, 489, 654
Sau3AI	GATC	1 cut(s)	361
Sau96I	GGNCC	1 cut(s)	557
ScrFI	CCNGG	2 cut(s)	209, 675
SfaNI	GCATC	2 cut(s)	336, 622
SfcI	CTRYAG	2 cut(s)	474, 697
SinI	GGWCC	1 cut(s)	557
SmiMI	CAYNNNNRTG	1 cut(s)	344
SmlI	CTYRAG	1 cut(s)	492
SmoI	CTYRAG	1 cut(s)	492
Sse9I	AATT	4 cut(s)	15, 96, 623, 690
SsiI	CCGC	1 cut(s)	67
SspMI	CTAG	4 cut(s)	122, 387, 513, 810
StyD4I	CCNGG	2 cut(s)	207, 673
TaaI	ACNGT	3 cut(s)	268, 527, 701
TaiI	ACGT	1 cut(s)	118
TaqI	TCGA	1 cut(s)	571
TasI	AATT	4 cut(s)	15, 96, 623, 690
TauI	GCSGC	1 cut(s)	70
TfiI	GAWTC	3 cut(s)	91, 449, 806
TscAI	CASTG	2 cut(s)	408, 713
TseFI	GTSAC	1 cut(s)	155
TseI	GCWGC	2 cut(s)	488, 653
Tsp45I	GTSAC	1 cut(s)	155
TspDTI	ATGAA	6 cut(s)	17, 76, 104, 147, 473, 781
TspRI	CASTG	2 cut(s)	408, 713
Tth111I	GACNNNGTC	1 cut(s)	161
VpaK11BI	GGWCC	1 cut(s)	557
XagI	CCTNNNNNAGG	1 cut(s)	636
XapI	RAATTY	1 cut(s)	15
XceI	RCATGY	1 cut(s)	343
XmnI	GAANNNNTTC	1 cut(s)	805
XspI	CTAG	4 cut(s)	122, 387, 513, 810

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.