Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0007619

Physical Location & Seq

Genomic Coordinates Forward (+)

30265569 .. 30267013

Gene Structure 1445 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom05g29990.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 789 bp

ATGCCTTACGGAATGGCACTCTGGTCAACTGGTATTGGAACGCGTCCTTTCATAAAGGATTTCATGGCTCAAGTTGGTCAGGCCAATCGACGAGCTTTGGCAACTGATGAGTGGCTGCGAGTGGAGGGCTGTGACAAGGTGTATGCAATTGGTGATTGTGCGACAATAAATCAGCGCAAAGTCATGGAGGATATTGCTTCCATATTCCGCAAGGCGGACAAGGATAATTCAGGAACACTAACAATCAAGGAGTATCAAGAAGTGATTAAGGATATCTGTGAAAGGTATCCTCAAGTGGAGCTATATTTGAAGAGCAAACAGATGAAGAATATGGTTGACCTTCTGAAGGAAACAGCGGATGTTTCAAAGGGAAACGCGGAGCTGAACATCGAACATTTCAAGACCGCTCTTTCCAAAGTGGATTCCCAGATGAAAAATCTTCCAGCCACAGGACAGGTTGCTGCTCAACAAGGTGTCTACCTTGCCAAATGTTTCAATCGTATGGAAAAGTGTGAGAAAAGTCCTGAAGGTCCTCTCAGGTTCCGTGGAGAAGGTCGCCATCGGTTCCATCCCTTTAGGTACAAGCATCTAGGTCAGTTTGCTCCGTTGGGAGGAGAGCAGACAGCAGCTCAGCTTCCCGGAGATTGGGTTTCGATTGGCCACAGCTCCCAGTGGCTTTGGTATTCTGTTTATGCAAGCAAACAAGTGAGCTGGCGCAACAGAGCACTGGTGGTATCGGACTGGGGTAGGCGTTTCATCTTTGGGAGGGACTCGTCGCATTTGAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003954 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005758 GO:0006091 GO:0006116 GO:0006119 GO:0006139 GO:0006163 GO:0006725 GO:0006732 GO:0006733 GO:0006734 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008137 GO:0008150 GO:0008152 GO:0009117 GO:0009123 GO:0009126 GO:0009141 GO:0009144 GO:0009150 GO:0009161 GO:0009167 GO:0009199 GO:0009205 GO:0009259 GO:0009987 GO:0015980 GO:0016020 GO:0016310 GO:0016491 GO:0016651 GO:0016655 GO:0017144 GO:0019362 GO:0019637 GO:0019674 GO:0019693 GO:0019866 GO:0022900 GO:0022904 GO:0031090 GO:0031966 GO:0031967 GO:0031970 GO:0031974 GO:0031975 GO:0034641 GO:0042773 GO:0042775 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044237 GO:0044238 GO:0044281 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0045333 GO:0046034 GO:0046483 GO:0046496 GO:0050136 GO:0051186 GO:0055086 GO:0055114 GO:0070013 GO:0071704 GO:0072521 GO:0072524 GO:1901135 GO:1901360 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EF-hand_1 Pyr_redox_2

Protein Analysis

263

Amino Acids

29.88

Weight (kDa)

9.28

Isoelectric Point (pI)

31.63

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pyr_redox_2	PF07992	4 - 58	7e-06	Pyridine nucleotide-disulphide oxidoreductase
NDH2_C	PF22366	196 - 257	2.6e-15	NDH2 C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007619)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G05020 AT4G05020 AT4G21490 AT4G21490
fragaria_vesca	FvH4_3g03960 FvH4_3g03960 FvH4_3g03960
malus_domestica	MD05G1325700.v1.1 MD10G1303600.v1.1
prunus_persica	Prupe.4G037100_v2.0.a1
pyrus_communis	pycom05g29980 pycom05g29990 pycom10g25610
rosa_chinensis	RchiOBHm_Chr5g0006291 RchiOBHm_Chr7g0225061
rosa_laevigata	RLG00000031367
rosa_multiflora	Rmu_sc0009466.1_g000004
rosa_roxburghii	Rroxscaffold_1G00069700
rosa_rugosa	Rorug04G0420800
rosa_samantha	Rh5AG048600 Rh5BG047700 Rh5CG056100 Rh5DG046900
rosa_wichuraiana	Rw5G004850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	407
AccI	GTMKAC	1 cut(s)	477
AccII	CGCG	2 cut(s)	43, 377
AciI	CCGC	5 cut(s)	208, 215, 356, 377, 405
AcoI	YGGCCR	1 cut(s)	658
AcuI	CTGAAG	2 cut(s)	365, 546
AfaI	GTAC	1 cut(s)	581
AfiI	CCNNNNNNNGG	5 cut(s)	214, 346, 449, 611, 645
AflIII	ACRYGT	1 cut(s)	41
AgsI	TTSAA	5 cut(s)	310, 366, 400, 496, 784
AluBI	AGCT	7 cut(s)	95, 301, 382, 629, 634, 666, 711
AluI	AGCT	7 cut(s)	95, 301, 382, 629, 634, 666, 711
Alw21I	GWGCWC	1 cut(s)	727
AoxI	GGCC	2 cut(s)	81, 658
ApeKI	GCWGC	3 cut(s)	115, 461, 626
AspLEI	GCGC	2 cut(s)	177, 717
AspS9I	GGNCC	1 cut(s)	530
AsuC2I	CCSGG	1 cut(s)	639
AsuHPI	GGTGA	1 cut(s)	164
AvaII	GGWCC	1 cut(s)	530
BalI	TGGCCA	1 cut(s)	660
Bbv12I	GWGCWC	1 cut(s)	727
BbvI	GCAGC	3 cut(s)	102, 448, 638
BccI	CCATC	2 cut(s)	567, 576
BciVI	GTATCC	1 cut(s)	297
BcnI	CCSGG	1 cut(s)	639
BfaI	CTAG	1 cut(s)	590
BfuI	GTATCC	1 cut(s)	297
BisI	GCNGC	3 cut(s)	116, 462, 627
BlpI	GCTNAGC	1 cut(s)	630
BlsI	GCNGC	3 cut(s)	117, 463, 628
Bme1390I	CCNGG	1 cut(s)	639
Bme18I	GGWCC	1 cut(s)	530
BmgT120I	GGNCC	1 cut(s)	530
BmiI	GGNNCC	2 cut(s)	542, 566
BmrFI	CCNGG	1 cut(s)	639
BmrI	ACTGGG	2 cut(s)	664, 751
BmsI	GCATC	1 cut(s)	595
BmuI	ACTGGG	2 cut(s)	664, 751
Bpu1102I	GCTNAGC	1 cut(s)	630
BpuEI	CTTGAG	2 cut(s)	54, 276
BpuMI	CCSGG	1 cut(s)	639
BsaJI	CCNNGG	1 cut(s)	544
BsaXI	ACNNNNNCTCC	2 cut(s)	633, 663
Bsc4I	CCNNNNNNNGG	5 cut(s)	214, 346, 449, 611, 645
Bse1I	ACTGG	4 cut(s)	34, 670, 732, 746
BseDI	CCNNGG	1 cut(s)	544
BseGI	GGATG	2 cut(s)	364, 568
BseLI	CCNNNNNNNGG	5 cut(s)	214, 346, 449, 611, 645
BseMII	CTCAG	2 cut(s)	550, 644
BseNI	ACTGG	4 cut(s)	34, 670, 732, 746
BseRI	GAGGAG	1 cut(s)	627
BseXI	GCAGC	3 cut(s)	102, 448, 638
Bsh1236I	CGCG	2 cut(s)	43, 377
BshFI	GGCC	2 cut(s)	83, 660
BsiHKAI	GWGCWC	1 cut(s)	727
BsiSI	CCGG	1 cut(s)	639
BslFI	GGGAC	1 cut(s)	782
BslI	CCNNNNNNNGG	5 cut(s)	214, 346, 449, 611, 645
BsmFI	GGGAC	1 cut(s)	782
BsnI	GGCC	2 cut(s)	83, 660
Bsp1286I	GDGCHC	1 cut(s)	727
Bsp1720I	GCTNAGC	1 cut(s)	630
BspACI	CCGC	5 cut(s)	208, 215, 356, 377, 405
BspANI	GGCC	2 cut(s)	83, 660
BspCNI	CTCAG	2 cut(s)	549, 643
BspFNI	CGCG	2 cut(s)	43, 377
BspLI	GGNNCC	2 cut(s)	542, 566
BspQI	GCTCTTC	1 cut(s)	305
BsrBI	CCGCTC	1 cut(s)	407
BsrI	ACTGG	4 cut(s)	34, 670, 732, 746
BssECI	CCNNGG	1 cut(s)	544
Bst6I	CTCTTC	1 cut(s)	305
BstC8I	GCNNGC	2 cut(s)	697, 713
BstDEI	CTNAG	2 cut(s)	536, 630
BstDSI	CCRYGG	1 cut(s)	544
BstENI	CCTNNNNNAGG	1 cut(s)	344
BstF5I	GGATG	2 cut(s)	364, 568
BstFNI	CGCG	2 cut(s)	43, 377
BstHHI	GCGC	2 cut(s)	177, 717
BstSCI	CCNGG	1 cut(s)	637
BstUI	CGCG	2 cut(s)	43, 377
BstV1I	GCAGC	3 cut(s)	102, 448, 638
BsuI	GTATCC	1 cut(s)	297
BsuRI	GGCC	2 cut(s)	83, 660
BtgI	CCRYGG	1 cut(s)	544
BtsCI	GGATG	2 cut(s)	364, 568
BtsIMutI	CAGTG	2 cut(s)	677, 725
Cac8I	GCNNGC	2 cut(s)	697, 713
CfoI	GCGC	2 cut(s)	177, 717
Cfr13I	GGNCC	1 cut(s)	530
CseI	GACGC	1 cut(s)	32
Csp6I	GTAC	1 cut(s)	580
CviAII	CATG	2 cut(s)	64, 184
CviQI	GTAC	1 cut(s)	580
DdeI	CTNAG	2 cut(s)	536, 630
EaeI	YGGCCR	1 cut(s)	658
Eam1104I	CTCTTC	1 cut(s)	305
EarI	CTCTTC	1 cut(s)	305
EciI	GGCGGA	1 cut(s)	230
Eco32I	GATATC	1 cut(s)	274
Eco47I	GGWCC	1 cut(s)	530
Eco57I	CTGAAG	2 cut(s)	365, 546
EcoNI	CCTNNNNNAGG	1 cut(s)	344
EcoO109I	RGGNCCY	1 cut(s)	530
EcoRV	GATATC	1 cut(s)	274
FaeI	CATG	2 cut(s)	67, 187
FaiI	YATR	9 cut(s)	53, 65, 144, 185, 203, 304, 332, 503, 693
FaqI	GGGAC	1 cut(s)	782
FatI	CATG	2 cut(s)	63, 183
FblI	GTMKAC	1 cut(s)	477
Fnu4HI	GCNGC	3 cut(s)	116, 462, 627
FokI	GGATG	2 cut(s)	371, 555
Fsp4HI	GCNGC	3 cut(s)	116, 462, 627
FspBI	CTAG	1 cut(s)	590
GlaI	GCGC	2 cut(s)	176, 716
GluI	GCNGC	3 cut(s)	116, 462, 627
HaeIII	GGCC	2 cut(s)	83, 660
HapII	CCGG	1 cut(s)	639
HgaI	GACGC	1 cut(s)	32
HhaI	GCGC	2 cut(s)	177, 717
Hin1II	CATG	2 cut(s)	67, 187
Hin6I	GCGC	2 cut(s)	175, 715
HinP1I	GCGC	2 cut(s)	175, 715
HincII	GTYRAC	2 cut(s)	27, 337
HindII	GTYRAC	2 cut(s)	27, 337
HinfI	GANTC	2 cut(s)	422, 770
HpaII	CCGG	1 cut(s)	639
HphI	GGTGA	1 cut(s)	164
Hpy166II	GTNNAC	3 cut(s)	27, 337, 478
Hpy188I	TCNGA	2 cut(s)	345, 739
Hpy188III	TCNNGA	4 cut(s)	231, 257, 400, 524
Hpy8I	GTNNAC	3 cut(s)	27, 337, 478
Hpy99I	CGWCG	2 cut(s)	93, 778
HpyAV	CCTTC	4 cut(s)	340, 350, 521, 545
HpyCH4V	TGCA	2 cut(s)	146, 695
HpyF3I	CTNAG	2 cut(s)	536, 630
Hsp92II	CATG	2 cut(s)	67, 187
HspAI	GCGC	2 cut(s)	175, 715
LguI	GCTCTTC	1 cut(s)	305
LmnI	GCTCC	4 cut(s)	298, 379, 607, 671
Lsp1109I	GCAGC	3 cut(s)	102, 448, 638
LweI	GCATC	1 cut(s)	595
MaeI	CTAG	1 cut(s)	590
MaeIII	GTNAC	1 cut(s)	131
MbiI	CCGCTC	1 cut(s)	407
MboII	GAAGA	3 cut(s)	322, 337, 431
MfeI	CAATTG	1 cut(s)	147
MhlI	GDGCHC	1 cut(s)	727
MlsI	TGGCCA	1 cut(s)	660
MluCI	AATT	3 cut(s)	147, 226, 784
MluI	ACGCGT	1 cut(s)	41
MluNI	TGGCCA	1 cut(s)	660
MlyI	GAGTC	1 cut(s)	764
MnlI	CCTC	6 cut(s)	118, 181, 300, 543, 605, 759
Mox20I	TGGCCA	1 cut(s)	660
MscI	TGGCCA	1 cut(s)	660
MseI	TTAA	1 cut(s)	267
Msp20I	TGGCCA	1 cut(s)	660
MspA1I	CMGCKG	1 cut(s)	356
MspI	CCGG	1 cut(s)	639
MspR9I	CCNGG	1 cut(s)	639
MunI	CAATTG	1 cut(s)	147
MvnI	CGCG	2 cut(s)	43, 377
NciI	CCSGG	1 cut(s)	639
NlaIII	CATG	2 cut(s)	67, 187
NlaIV	GGNNCC	2 cut(s)	542, 566
NmuCI	GTSAC	1 cut(s)	131
PciSI	GCTCTTC	1 cut(s)	305
PfeI	GAWTC	1 cut(s)	422
PfoI	TCCNGGA	1 cut(s)	637
PkrI	GCNGC	3 cut(s)	117, 463, 628
PleI	GAGTC	1 cut(s)	764
PpsI	GAGTC	1 cut(s)	764
PpuMI	RGGWCCY	1 cut(s)	530
Psp5II	RGGWCCY	1 cut(s)	530
PspN4I	GGNNCC	2 cut(s)	542, 566
PspPI	GGNCC	1 cut(s)	530
PspPPI	RGGWCCY	1 cut(s)	530
RsaI	GTAC	1 cut(s)	581
RsaNI	GTAC	1 cut(s)	580
SapI	GCTCTTC	1 cut(s)	305
SaqAI	TTAA	1 cut(s)	267
SatI	GCNGC	3 cut(s)	116, 462, 627
Sau96I	GGNCC	1 cut(s)	530
SchI	GAGTC	1 cut(s)	764
ScrFI	CCNGG	1 cut(s)	639
SduI	GDGCHC	1 cut(s)	727
SfaNI	GCATC	1 cut(s)	595
SinI	GGWCC	1 cut(s)	530
SmlI	CTYRAG	2 cut(s)	69, 291
SmoI	CTYRAG	2 cut(s)	69, 291
Sse9I	AATT	3 cut(s)	147, 226, 784
SsiI	CCGC	5 cut(s)	208, 215, 356, 377, 405
SspMI	CTAG	1 cut(s)	590
StyD4I	CCNGG	1 cut(s)	637
TaqI	TCGA	3 cut(s)	88, 390, 653
TasI	AATT	3 cut(s)	147, 226, 784
TfiI	GAWTC	1 cut(s)	422
Tru1I	TTAA	1 cut(s)	267
Tru9I	TTAA	1 cut(s)	267
TscAI	CASTG	2 cut(s)	677, 732
TseFI	GTSAC	1 cut(s)	131
TseI	GCWGC	3 cut(s)	115, 461, 626
Tsp45I	GTSAC	1 cut(s)	131
TspDTI	ATGAA	5 cut(s)	40, 52, 338, 446, 745
TspGWI	ACGGA	3 cut(s)	24, 533, 594
TspRI	CASTG	2 cut(s)	677, 732
VpaK11BI	GGWCC	1 cut(s)	530
XagI	CCTNNNNNAGG	1 cut(s)	344
XmiI	GTMKAC	1 cut(s)	477
XspI	CTAG	1 cut(s)	590

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.