Rmu_sc0009466.1_g000004

External alternative NAD(P)H-ubiquinone oxidoreductase

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0009466.1
Physical Location & Seq
Reverse (-)
10777 .. 14785
4009 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0009466.1_g000004.1.cds

Sequence Viewer

Length: 1746 bp
atgaaagatttcggaatcgtccagaagatttctagacctttccgtgccaaccctaggctctccaatattctcctcgtcgtcgccgtcagtggcggcggctatgtggcttatgctcaagcgaactcagactctgacctgatcagtagtagtgcacctgatgtggaaagaaagaaggtggttgtacttggaactgggtgggcaggaacatctttcttaaggagtctgaaaaattcttcatatgatgttcatgttgtttctcctaggaattactttgcgttcacccctttattaccaagtgttacctgtggtaccgtggagcctcggagcattgttgaaccaattcgtaacattgtcagaaagaaaaagattggctttcaattcactgaagctgagtgtctcaagattgatgcaaaagagaagaaagtctattgccgatctaatctagagaatggggaaaaagaatttgttgtggactacgactaccttgtaatatctgtgggagcaaatgttaatacattcaatactcctggtgtgatggagaactgccatttcttgaaggaagtagaagatgcccagaagatacgaaaaactgttattgaatgctttgaaaaggctagcctgccaactgtaagtgatgaggagaaggagagaattcttcattttgccgttgttggaggtggcccaactggtgtggagtttgctgcagaacttcatgactatgtgaatgaagacttggtcaaattatatcctggggtaaaagataaagttaaaataacacttctcgaggctggaaatcacattctgagtatgtttgataaaagaatcacggagtttgctgaagaaaaatttcgcagagagggtattaatgtaaaaactggagcaatggttaccaaagtagatgataaacaaatcactaccaaagaaatgaaaactggggaaatttccaccatgccatatggaatggctctctggtcaactggtattggaacgcggcctttcataagggatttcatgaatcaaattggtcaggctaatagacgtgttctagcaactgatgaatggttacgagtggagggatgtgacaaagtctatgcacttggtgattgtgccacaatcaatcagcgaaaagtcctggaagatatcactgccatattcagtaaggcagacaaggacaaatcaggaacacttacagttcaagaatggaaagaagtcatcaatgacatttgtgaaagatatcctcaagtggagctttatttgaagaacatgcagatgcgcgatattgttgatcttttgaaggaaacaaagggcgctagtgcaaccaaatcagtggaactgaacattgaagatttcaaaacagctctttctaaagtggattcccagatgaaaatgcttccagctacagcccaggttgcagctcaagaaggtgcctaccttgccagttgtttcaaccgtatggaaaagtgtgagaaatatccagaaggtcctctcaggtttcgaggagaaggtcgccatcggtttcatcccttcaggtacaagcatcttggtcaatttgctcctttgggaggtgagcaaactgctgcacaactccctgttcttcccggtgatggggtgtcaattggctacagttcccagtggctttggtattctgtttatgcaagcaaacaagttagctggcgcaacaggggaatggtcatttcagactgggtaaggcgtttcatttttggaagggattctagtcagatttga

Protein Analysis

581

Amino Acids

65.38

Weight (kDa)

8.57

Isoelectric Point (pI)

34.91

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 308
AccB1I GGYRCC 2 cut(s) 308, 1424
AccII CGCG 2 cut(s) 991, 1275
AciI CCGC 3 cut(s) 93, 96, 991
AcsI RAATTY 5 cut(s) 229, 461, 651, 845, 939
AcuI CTGAAG 3 cut(s) 405, 858, 1510
AdeI CACNNNGTG 1 cut(s) 1100
AfaI GTAC 3 cut(s) 183, 310, 1532
AfiI CCNNNNNNNGG 4 cut(s) 54, 1562, 1604, 1605
AflII CTTAAG 1 cut(s) 214
AflIII ACRYGT 1 cut(s) 1039
AjiI CACGTC 1 cut(s) 1040
AjnI CCWGG 4 cut(s) 526, 748, 1131, 1404
AjuI GAANNNNNNNTTGG 2 cut(s) 716, 748
AluBI AGCT 6 cut(s) 389, 1249, 1358, 1397, 1415, 1671
AluI AGCT 6 cut(s) 389, 1249, 1358, 1397, 1415, 1671
Alw21I GWGCWC 1 cut(s) 154
Alw26I GTCTC 1 cut(s) 401
Alw44I GTGCAC 1 cut(s) 150
AlwNI CAGNNNCTG 1 cut(s) 131
Ama87I CYCGRG 1 cut(s) 782
AoxI GGCC 2 cut(s) 679, 992
ApaLI GTGCAC 1 cut(s) 150
ApeKI GCWGC 3 cut(s) 701, 1412, 1577
ApoI RAATTY 5 cut(s) 229, 461, 651, 845, 939
AseI ATTAAT 1 cut(s) 864
Asp700I GAANNNNTTC 4 cut(s) 8, 339, 846, 1729
Asp718I GGTACC 1 cut(s) 308
AspA2I CCTAGG 2 cut(s) 53, 260
AspLEI GCGC 3 cut(s) 1275, 1310, 1677
AspS9I GGNCC 2 cut(s) 680, 1481
AsuC2I CCSGG 1 cut(s) 1599
AsuHPI GGTGA 4 cut(s) 271, 1112, 1577, 1613
AsuNHI GCTAGC 1 cut(s) 614
AvaI CYCGRG 1 cut(s) 782
AvaII GGWCC 1 cut(s) 1481
AvrII CCTAGG 2 cut(s) 53, 260
BaeGI GKGCMC 1 cut(s) 154
BanI GGYRCC 2 cut(s) 308, 1424
BbsI GAAGAC 1 cut(s) 735
Bbv12I GWGCWC 1 cut(s) 154
BbvI GCAGC 3 cut(s) 688, 1424, 1564
BccI CCATC 3 cut(s) 529, 1518, 1598
BceAI ACGGC 2 cut(s) 68, 650
BciT130I CCWGG 4 cut(s) 528, 750, 1133, 1406
BclI TGATCA 1 cut(s) 138
BcnI CCSGG 1 cut(s) 1599
BcoDI GTCTC 1 cut(s) 401
BfaI CTAG 8 cut(s) 33, 54, 261, 443, 615, 1046, 1311, 1734
BfmI CTRYAG 3 cut(s) 702, 1398, 1621
BfoI RGCGCY 1 cut(s) 1311
BfrI CTTAAG 1 cut(s) 214
BisI GCNGC 6 cut(s) 94, 97, 702, 992, 1413, 1578
BlnI CCTAGG 2 cut(s) 53, 260
BlsI GCNGC 6 cut(s) 95, 98, 703, 993, 1414, 1579
Bme1390I CCNGG 5 cut(s) 528, 750, 1133, 1406, 1599
Bme18I GGWCC 1 cut(s) 1481
BmeT110I CYCGRG 1 cut(s) 782
BmgBI CACGTC 1 cut(s) 1040
BmgT120I GGNCC 2 cut(s) 680, 1481
BmiI GGNNCC 3 cut(s) 310, 318, 1426
BmrFI CCNGG 5 cut(s) 528, 750, 1133, 1406, 1599
BmrI ACTGGG 4 cut(s) 201, 942, 1624, 1711
BmsI GCATC 4 cut(s) 397, 559, 1260, 1546
BmtI GCTAGC 1 cut(s) 618
BmuI ACTGGG 4 cut(s) 201, 942, 1624, 1711
BpiI GAAGAC 1 cut(s) 735
BpmI CTGGAG 1 cut(s) 897
BpuEI CTTGAG 4 cut(s) 99, 383, 1224, 1401
BpuMI CCSGG 1 cut(s) 1599
BsaJI CCNNGG 6 cut(s) 53, 260, 312, 320, 749, 1404
BsaXI ACNNNNNCTCC 4 cut(s) 492, 522, 870, 900
Bsc4I CCNNNNNNNGG 4 cut(s) 54, 1562, 1604, 1605
Bse1I ACTGG 8 cut(s) 196, 691, 880, 937, 982, 1437, 1630, 1706
Bse3DI GCAATG 1 cut(s) 888
BseBI CCWGG 4 cut(s) 528, 750, 1133, 1406
BseDI CCNNGG 6 cut(s) 53, 260, 312, 320, 749, 1404
BseGI GGATG 2 cut(s) 1082, 1519
BseLI CCNNNNNNNGG 4 cut(s) 54, 1562, 1604, 1605
BseMI GCAATG 1 cut(s) 888
BseMII CTCAG 4 cut(s) 138, 381, 794, 1501
BseNI ACTGG 8 cut(s) 196, 691, 880, 937, 982, 1437, 1630, 1706
BseRI GAGGAG 3 cut(s) 62, 653, 1512
BseSI GKGCMC 1 cut(s) 154
BseXI GCAGC 3 cut(s) 688, 1424, 1564
BsgI GTGCAG 1 cut(s) 1563
Bsh1236I CGCG 2 cut(s) 991, 1275
BshFI GGCC 2 cut(s) 681, 994
BshNI GGYRCC 2 cut(s) 308, 1424
BsiHKAI GWGCWC 1 cut(s) 154
BsiHKCI CYCGRG 1 cut(s) 782
BsiSI CCGG 1 cut(s) 1599
BslI CCNNNNNNNGG 4 cut(s) 54, 1562, 1604, 1605
BsmAI GTCTC 1 cut(s) 401
BsmI GAATGC 1 cut(s) 605
BsnI GGCC 2 cut(s) 681, 994
BsoBI CYCGRG 1 cut(s) 782
Bsp1286I GDGCHC 1 cut(s) 154
Bsp143I GATC 3 cut(s) 138, 434, 1285
BspACI CCGC 3 cut(s) 93, 96, 991
BspANI GGCC 2 cut(s) 681, 994
BspCNI CTCAG 4 cut(s) 137, 382, 795, 1500
BspFNI CGCG 2 cut(s) 991, 1275
BspHI TCATGA 2 cut(s) 712, 1011
BspLI GGNNCC 3 cut(s) 310, 318, 1426
BspMAI CTGCAG 1 cut(s) 706
BspOI GCTAGC 1 cut(s) 618
BspT107I GGYRCC 2 cut(s) 308, 1424
BspTI CTTAAG 1 cut(s) 214
BsrDI GCAATG 1 cut(s) 888
BsrI ACTGG 8 cut(s) 196, 691, 880, 937, 982, 1437, 1630, 1706
BssECI CCNNGG 6 cut(s) 53, 260, 312, 320, 749, 1404
BssMI GATC 3 cut(s) 138, 434, 1285
BssT1I CCWWGG 2 cut(s) 53, 260
Bst2UI CCWGG 4 cut(s) 528, 750, 1133, 1406
Bst4CI ACNGT 6 cut(s) 313, 592, 628, 1192, 1451, 1625
BstAFI CTTAAG 1 cut(s) 214
BstC8I GCNNGC 4 cut(s) 616, 620, 1657, 1673
BstDEI CTNAG 4 cut(s) 124, 390, 803, 1487
BstDSI CCRYGG 1 cut(s) 312
BstEII GGTNACC 1 cut(s) 886
BstENI CCTNNNNNAGG 1 cut(s) 1560
BstF5I GGATG 2 cut(s) 1082, 1519
BstFNI CGCG 2 cut(s) 991, 1275
BstH2I RGCGCY 1 cut(s) 1311
BstHHI GCGC 3 cut(s) 1275, 1310, 1677
BstKTI GATC 3 cut(s) 141, 437, 1288
BstMAI GTCTC 1 cut(s) 401
BstMBI GATC 3 cut(s) 138, 434, 1285
BstMWI GCNNNNNNNGC 2 cut(s) 1409, 1433
BstNI CCWGG 4 cut(s) 528, 750, 1133, 1406
BstNSI RCATGY 1 cut(s) 1267
BstPI GGTNACC 1 cut(s) 886
BstSCI CCNGG 5 cut(s) 526, 748, 1131, 1404, 1597
BstSFI CTRYAG 3 cut(s) 702, 1398, 1621
BstSLI GKGCMC 1 cut(s) 154
BstUI CGCG 2 cut(s) 991, 1275
BstV1I GCAGC 3 cut(s) 688, 1424, 1564
BstV2I GAAGAC 1 cut(s) 735
BstXI CCANNNNNNTGG 1 cut(s) 1327
BsuRI GGCC 2 cut(s) 681, 994
BtgI CCRYGG 1 cut(s) 312
BtrI CACGTC 1 cut(s) 1040
BtsCI GGATG 2 cut(s) 1082, 1519
BtsI GCAGTG 1 cut(s) 1143
BtsIMutI CAGTG 5 cut(s) 94, 381, 1143, 1332, 1637
Cac8I GCNNGC 4 cut(s) 616, 620, 1657, 1673
CaiI CAGNNNCTG 1 cut(s) 131
CciI TCATGA 2 cut(s) 712, 1011
CfoI GCGC 3 cut(s) 1275, 1310, 1677
Cfr13I GGNCC 2 cut(s) 680, 1481
Csp6I GTAC 3 cut(s) 182, 309, 1531
CspCI CAANNNNNGTGG 2 cut(s) 672, 707
CviAII CATG 5 cut(s) 248, 713, 949, 1012, 1264
CviQI GTAC 3 cut(s) 182, 309, 1531
DdeI CTNAG 4 cut(s) 124, 390, 803, 1487
DpnI GATC 3 cut(s) 140, 436, 1287
DpnII GATC 3 cut(s) 138, 434, 1285
DraIII CACNNNGTG 1 cut(s) 1100
Eco130I CCWWGG 2 cut(s) 53, 260
Eco32I GATATC 2 cut(s) 1141, 1235
Eco47I GGWCC 1 cut(s) 1481
Eco57I CTGAAG 3 cut(s) 405, 858, 1510
Eco88I CYCGRG 1 cut(s) 782
Eco91I GGTNACC 1 cut(s) 886
EcoNI CCTNNNNNAGG 1 cut(s) 1560
EcoO109I RGGNCCY 1 cut(s) 1481
EcoO65I GGTNACC 1 cut(s) 886
EcoRI GAATTC 1 cut(s) 651
EcoRII CCWGG 4 cut(s) 526, 748, 1131, 1404
EcoRV GATATC 2 cut(s) 1141, 1235
EcoT14I CCWWGG 2 cut(s) 53, 260
ErhI CCWWGG 2 cut(s) 53, 260
FaeI CATG 5 cut(s) 251, 716, 952, 1015, 1267
FalI AAGNNNNNCTT 4 cut(s) 356, 388, 1233, 1265
FatI CATG 5 cut(s) 247, 712, 948, 1011, 1263
FauNDI CATATG 2 cut(s) 238, 955
FbaI TGATCA 1 cut(s) 138
Fnu4HI GCNGC 6 cut(s) 94, 97, 702, 992, 1413, 1578
FokI GGATG 2 cut(s) 1089, 1506
Fsp4HI GCNGC 6 cut(s) 94, 97, 702, 992, 1413, 1578
FspBI CTAG 8 cut(s) 33, 54, 261, 443, 615, 1046, 1311, 1734
GlaI GCGC 3 cut(s) 1274, 1309, 1676
GluI GCNGC 6 cut(s) 94, 97, 702, 992, 1413, 1578
GsuI CTGGAG 1 cut(s) 897
HaeII RGCGCY 1 cut(s) 1311
HaeIII GGCC 2 cut(s) 681, 994
HapII CCGG 1 cut(s) 1599
HhaI GCGC 3 cut(s) 1275, 1310, 1677
Hin1II CATG 5 cut(s) 251, 716, 952, 1015, 1267
Hin6I GCGC 3 cut(s) 1273, 1308, 1675
HinP1I GCGC 3 cut(s) 1273, 1308, 1675
HincII GTYRAC 1 cut(s) 975
HindII GTYRAC 1 cut(s) 975
HinfI GANTC 7 cut(s) 15, 128, 220, 822, 1015, 1373, 1730
HpaII CCGG 1 cut(s) 1599
HphI GGTGA 4 cut(s) 271, 1112, 1577, 1613
Hpy166II GTNNAC 4 cut(s) 152, 279, 472, 975
Hpy188I TCNGA 9 cut(s) 14, 127, 133, 225, 324, 356, 804, 1699, 1740
Hpy8I GTNNAC 4 cut(s) 152, 279, 472, 975
Hpy99I CGWCG 2 cut(s) 80, 83
HpyAV CCTTC 9 cut(s) 166, 550, 637, 1288, 1415, 1472, 1496, 1534, 1719
HpyCH4III ACNGT 6 cut(s) 313, 592, 628, 1192, 1451, 1625
HpyCH4IV ACGT 1 cut(s) 1039
HpyCH4V TGCA 9 cut(s) 152, 410, 704, 1094, 1267, 1316, 1412, 1580, 1655
HpyF10VI GCNNNNNNNGC 2 cut(s) 1409, 1433
HpyF3I CTNAG 4 cut(s) 124, 390, 803, 1487
HpySE526I ACGT 1 cut(s) 1039
Hsp92II CATG 5 cut(s) 251, 716, 952, 1015, 1267
HspAI GCGC 3 cut(s) 1273, 1308, 1675
KpnI GGTACC 1 cut(s) 312
Ksp22I TGATCA 1 cut(s) 138
Kzo9I GATC 3 cut(s) 138, 434, 1285
LmnI GCTCC 6 cut(s) 316, 324, 500, 878, 1246, 1558
Lsp1109I GCAGC 3 cut(s) 688, 1424, 1564
LweI GCATC 4 cut(s) 397, 559, 1260, 1546
MaeI CTAG 8 cut(s) 33, 54, 261, 443, 615, 1046, 1311, 1734
MaeII ACGT 1 cut(s) 1039
MaeIII GTNAC 5 cut(s) 298, 344, 886, 1062, 1079
MalI GATC 3 cut(s) 140, 436, 1287
MboI GATC 3 cut(s) 138, 434, 1285
MfeI CAATTG 1 cut(s) 1614
MhlI GDGCHC 1 cut(s) 154
MlyI GAGTC 2 cut(s) 122, 229
MmeI TCCRAC 1 cut(s) 652
MroXI GAANNNNTTC 4 cut(s) 8, 339, 846, 1729
MseI TTAA 4 cut(s) 215, 510, 768, 864
MslI CAYNNNNRTG 2 cut(s) 717, 1268
MspCI CTTAAG 1 cut(s) 214
MspI CCGG 1 cut(s) 1599
MspR9I CCNGG 5 cut(s) 528, 750, 1133, 1406, 1599
MunI CAATTG 1 cut(s) 1614
Mva1269I GAATGC 1 cut(s) 605
MvaI CCWGG 4 cut(s) 528, 750, 1133, 1406
MvnI CGCG 2 cut(s) 991, 1275
MwoI GCNNNNNNNGC 2 cut(s) 1409, 1433
NciI CCSGG 1 cut(s) 1599
NdeI CATATG 2 cut(s) 238, 955
NdeII GATC 3 cut(s) 138, 434, 1285
NheI GCTAGC 1 cut(s) 614
NlaIII CATG 5 cut(s) 251, 716, 952, 1015, 1267
NlaIV GGNNCC 3 cut(s) 310, 318, 1426
NmuCI GTSAC 1 cut(s) 1079
NspI RCATGY 1 cut(s) 1267
PaeR7I CTCGAG 1 cut(s) 782
PagI TCATGA 2 cut(s) 712, 1011
PcsI WCGNNNNNNNCGW 1 cut(s) 81
PctI GAATGC 1 cut(s) 605
PdmI GAANNNNTTC 4 cut(s) 8, 339, 846, 1729
PfeI GAWTC 5 cut(s) 15, 822, 1015, 1373, 1730
PflFI GACNNNGTC 2 cut(s) 734, 1085
PfoI TCCNGGA 1 cut(s) 1131
PkrI GCNGC 6 cut(s) 95, 98, 703, 993, 1414, 1579
PleI GAGTC 2 cut(s) 122, 228
PpsI GAGTC 2 cut(s) 122, 228
PpuMI RGGWCCY 1 cut(s) 1481
PshBI ATTAAT 1 cut(s) 864
Psp5II RGGWCCY 1 cut(s) 1481
Psp6I CCWGG 4 cut(s) 526, 748, 1131, 1404
PspEI GGTNACC 1 cut(s) 886
PspGI CCWGG 4 cut(s) 526, 748, 1131, 1404
PspN4I GGNNCC 3 cut(s) 310, 318, 1426
PspPI GGNCC 2 cut(s) 680, 1481
PspPPI RGGWCCY 1 cut(s) 1481
PstI CTGCAG 1 cut(s) 706
PstNI CAGNNNCTG 1 cut(s) 131
PsyI GACNNNGTC 2 cut(s) 734, 1085
RsaI GTAC 3 cut(s) 183, 310, 1532
RsaNI GTAC 3 cut(s) 182, 309, 1531
RseI CAYNNNNRTG 2 cut(s) 717, 1268
SaqAI TTAA 4 cut(s) 215, 510, 768, 864
SatI GCNGC 6 cut(s) 94, 97, 702, 992, 1413, 1578
Sau3AI GATC 3 cut(s) 138, 434, 1285
Sau96I GGNCC 2 cut(s) 680, 1481
SchI GAGTC 2 cut(s) 122, 229
ScrFI CCNGG 5 cut(s) 528, 750, 1133, 1406, 1599
SduI GDGCHC 1 cut(s) 154
SfaNI GCATC 4 cut(s) 397, 559, 1260, 1546
SfcI CTRYAG 3 cut(s) 702, 1398, 1621
Sfr274I CTCGAG 1 cut(s) 782
SinI GGWCC 1 cut(s) 1481
SlaI CTCGAG 1 cut(s) 782
SmiMI CAYNNNNRTG 2 cut(s) 717, 1268
SmlI CTYRAG 6 cut(s) 114, 214, 398, 782, 1239, 1416
SmoI CTYRAG 6 cut(s) 114, 214, 398, 782, 1239, 1416
SsiI CCGC 3 cut(s) 93, 96, 991
SspI AATATT 1 cut(s) 67
SspMI CTAG 8 cut(s) 33, 54, 261, 443, 615, 1046, 1311, 1734
StyD4I CCNGG 5 cut(s) 526, 748, 1131, 1404, 1597
StyI CCWWGG 2 cut(s) 53, 260
TaaI ACNGT 6 cut(s) 313, 592, 628, 1192, 1451, 1625
TaiI ACGT 1 cut(s) 1042
TaqI TCGA 2 cut(s) 783, 1495
TatI WGTACW 1 cut(s) 181
TauI GCSGC 3 cut(s) 96, 99, 994
TfiI GAWTC 5 cut(s) 15, 822, 1015, 1373, 1730
Tru1I TTAA 4 cut(s) 215, 510, 768, 864
Tru9I TTAA 4 cut(s) 215, 510, 768, 864
TscAI CASTG 5 cut(s) 94, 388, 1150, 1332, 1637
TseFI GTSAC 1 cut(s) 1079
TseI GCWGC 3 cut(s) 701, 1412, 1577
Tsp45I GTSAC 1 cut(s) 1079
TspGWI ACGGA 2 cut(s) 32, 842
TspRI CASTG 5 cut(s) 94, 388, 1150, 1332, 1637
Tth111I GACNNNGTC 2 cut(s) 734, 1085
Vha464I CTTAAG 1 cut(s) 214
VneI GTGCAC 1 cut(s) 150
VpaK11BI GGWCC 1 cut(s) 1481
VspI ATTAAT 1 cut(s) 864
XagI CCTNNNNNAGG 1 cut(s) 1560
XapI RAATTY 5 cut(s) 229, 461, 651, 845, 939
XbaI TCTAGA 2 cut(s) 32, 442
XceI RCATGY 1 cut(s) 1267
XhoI CTCGAG 1 cut(s) 782
XmaJI CCTAGG 2 cut(s) 53, 260
XmnI GAANNNNTTC 4 cut(s) 8, 339, 846, 1729
XspI CTAG 8 cut(s) 33, 54, 261, 443, 615, 1046, 1311, 1734
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.