AT4G06536

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0017515
Physical Location & Seq
Forward (+)
3360719 .. 3361516
798 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G06536.1

Sequence Viewer

Length: 510 bp
ATGTTAGGAATGAAGCTGGTTTGTGAATCGGAGAAACATGAGTGGGCAAAGGAAAACAAAGTGGTTGGTTGTGGTTACGATCCGAGGAAGAAGAAGGTTTACTTCACAGTTAACTCACACCTGGTTCATGTTATTAACTGTAAAGCAGACGAGTTCGGGACACCTCTATATCCCACTCTTGCTTCCAACACAGAGGCCAGAGTTCTTGTCAACTTGGGGCAATCTCCATTTTATTACAGCCCGGCAAACGGGCAGCGGACATCAAACCCATGTGCTGGTGCTGTAGCCGGGCTCGAGGACAGCAAAGAGCTCTTCTCCATTGGAAGAATAGATTCTCACTATTTAAGTAATTTTTTCATTAACCGAGGAAATAGTGACGAGATTGCAAGCGGGAGGGCCACCGTGGGAAATAGTCATAGACGTAAGCTTGACTATGACGAAGAATCCGATGCTGATCTTTTTGAGATTGCGCTTGAACGGTCTGGAAAACTAAATCCGTCCAAGTTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SPRY

Protein Analysis

169

Amino Acids

18.76

Weight (kDa)

6.52

Isoelectric Point (pI)

35.08

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017515)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G06536
fragaria_vesca FvH4_2g33990
malus_domestica MD08G1095800.v1.1 MD15G1078600.v1.1
prunus_persica Prupe.1G431800_v2.0.a1
pyrus_communis pycom08g07780 pycom08g07790 pycom15g07320
rosa_chinensis RchiOBHm_Chr6g0308391
rosa_multiflora Rmu_co8453189.1_g000001 Rmu_sc0005523.1_g000018
rosa_samantha Rh6AG475900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 508
AccB7I CCANNNNNTGG 1 cut(s) 275
AciI CCGC 2 cut(s) 256, 390
AclWI GGATC 1 cut(s) 74
AfiI CCNNNNNNNGG 2 cut(s) 248, 275
AgsI TTSAA 1 cut(s) 476
AjnI CCWGG 1 cut(s) 120
AluBI AGCT 3 cut(s) 16, 310, 427
AluI AGCT 3 cut(s) 16, 310, 427
Alw21I GWGCWC 1 cut(s) 312
AlwI GGATC 1 cut(s) 74
Ama87I CYCGRG 1 cut(s) 293
AoxI GGCC 2 cut(s) 195, 396
ApeKI GCWGC 1 cut(s) 253
Asp700I GAANNNNTTC 1 cut(s) 331
AspLEI GCGC 1 cut(s) 472
AspS9I GGNCC 1 cut(s) 396
AsuC2I CCSGG 2 cut(s) 242, 289
AvaI CYCGRG 1 cut(s) 293
BanII GRGCYC 2 cut(s) 294, 312
BarI GAAGNNNNNNTAC 2 cut(s) 83, 115
Bbv12I GWGCWC 1 cut(s) 312
BbvI GCAGC 1 cut(s) 265
BciT130I CCWGG 1 cut(s) 122
BcnI CCSGG 2 cut(s) 242, 289
BfmI CTRYAG 1 cut(s) 282
BisI GCNGC 1 cut(s) 254
BlsI GCNGC 1 cut(s) 255
Bme1390I CCNGG 3 cut(s) 122, 242, 289
BmeT110I CYCGRG 1 cut(s) 293
BmgT120I GGNCC 1 cut(s) 396
BmrFI CCNGG 3 cut(s) 122, 242, 289
BmsI GCATC 1 cut(s) 439
BplI GAGNNNNNCTC 2 cut(s) 299, 331
BpuMI CCSGG 2 cut(s) 242, 289
BsaBI GATNNNNATC 1 cut(s) 453
BsaJI CCNNGG 3 cut(s) 83, 364, 402
Bsc4I CCNNNNNNNGG 2 cut(s) 248, 275
Bse8I GATNNNNATC 1 cut(s) 453
BseBI CCWGG 1 cut(s) 122
BseDI CCNNGG 3 cut(s) 83, 364, 402
BseJI GATNNNNATC 1 cut(s) 453
BseLI CCNNNNNNNGG 2 cut(s) 248, 275
BseXI GCAGC 1 cut(s) 265
BshFI GGCC 2 cut(s) 197, 398
BsiHKAI GWGCWC 1 cut(s) 312
BsiHKCI CYCGRG 1 cut(s) 293
BsiSI CCGG 2 cut(s) 242, 288
BslFI GGGAC 1 cut(s) 172
BslI CCNNNNNNNGG 2 cut(s) 248, 275
BsmFI GGGAC 1 cut(s) 172
BsnI GGCC 2 cut(s) 197, 398
BsoBI CYCGRG 1 cut(s) 293
Bsp1286I GDGCHC 2 cut(s) 294, 312
Bsp143I GATC 2 cut(s) 79, 454
BspACI CCGC 2 cut(s) 256, 390
BspANI GGCC 2 cut(s) 197, 398
BspPI GGATC 1 cut(s) 74
BspQI GCTCTTC 1 cut(s) 317
BssECI CCNNGG 3 cut(s) 83, 364, 402
BssMI GATC 2 cut(s) 79, 454
Bst2UI CCWGG 1 cut(s) 122
Bst4CI ACNGT 4 cut(s) 109, 140, 403, 480
Bst6I CTCTTC 1 cut(s) 317
BstC8I GCNNGC 1 cut(s) 388
BstDSI CCRYGG 1 cut(s) 402
BstHHI GCGC 1 cut(s) 472
BstKTI GATC 2 cut(s) 82, 457
BstMBI GATC 2 cut(s) 79, 454
BstNI CCWGG 1 cut(s) 122
BstSCI CCNGG 3 cut(s) 120, 240, 287
BstSFI CTRYAG 1 cut(s) 282
BstV1I GCAGC 1 cut(s) 265
BsuRI GGCC 2 cut(s) 197, 398
BtgI CCRYGG 1 cut(s) 402
Cac8I GCNNGC 1 cut(s) 388
CfoI GCGC 1 cut(s) 472
Cfr13I GGNCC 1 cut(s) 396
CsiI ACCWGGT 1 cut(s) 120
CviAII CATG 3 cut(s) 38, 128, 270
CviJI RGCY 8 cut(s) 16, 197, 240, 287, 292, 310, 398, 427
CviKI_1 RGCY 8 cut(s) 16, 197, 240, 287, 292, 310, 398, 427
DpnI GATC 2 cut(s) 81, 456
DpnII GATC 2 cut(s) 79, 454
Eam1104I CTCTTC 1 cut(s) 317
EarI CTCTTC 1 cut(s) 317
Ecl136II GAGCTC 1 cut(s) 310
Eco24I GRGCYC 2 cut(s) 294, 312
Eco53kI GAGCTC 1 cut(s) 310
Eco88I CYCGRG 1 cut(s) 293
EcoICRI GAGCTC 1 cut(s) 310
EcoRII CCWGG 1 cut(s) 120
EcoT38I GRGCYC 2 cut(s) 294, 312
FaeI CATG 3 cut(s) 41, 131, 273
FaiI YATR 7 cut(s) 39, 129, 169, 271, 417, 435, 508
FalI AAGNNNNNCTT 2 cut(s) 86, 118
FaqI GGGAC 1 cut(s) 172
FatI CATG 3 cut(s) 37, 127, 269
FauI CCCGC 1 cut(s) 383
Fnu4HI GCNGC 1 cut(s) 254
FriOI GRGCYC 2 cut(s) 294, 312
Fsp4HI GCNGC 1 cut(s) 254
GlaI GCGC 1 cut(s) 471
GluI GCNGC 1 cut(s) 254
HaeIII GGCC 2 cut(s) 197, 398
HapII CCGG 2 cut(s) 242, 288
HhaI GCGC 1 cut(s) 472
Hin1II CATG 3 cut(s) 41, 131, 273
Hin6I GCGC 1 cut(s) 470
HinP1I GCGC 1 cut(s) 470
HincII GTYRAC 2 cut(s) 112, 211
HindII GTYRAC 2 cut(s) 112, 211
HindIII AAGCTT 1 cut(s) 425
HinfI GANTC 3 cut(s) 26, 332, 443
HpaI GTTAAC 1 cut(s) 112
HpaII CCGG 2 cut(s) 242, 288
Hpy166II GTNNAC 3 cut(s) 100, 112, 211
Hpy188I TCNGA 3 cut(s) 31, 84, 448
Hpy188III TCNNGA 2 cut(s) 157, 483
Hpy8I GTNNAC 3 cut(s) 100, 112, 211
HpyAV CCTTC 1 cut(s) 88
HpyCH4III ACNGT 4 cut(s) 109, 140, 403, 480
HpyCH4IV ACGT 1 cut(s) 421
HpyCH4V TGCA 1 cut(s) 386
HpySE526I ACGT 1 cut(s) 421
Hsp92II CATG 3 cut(s) 41, 131, 273
HspAI GCGC 1 cut(s) 470
KspAI GTTAAC 1 cut(s) 112
Kzo9I GATC 2 cut(s) 79, 454
LguI GCTCTTC 1 cut(s) 317
LpnPI CCDG 8 cut(s) 2, 107, 134, 211, 255, 261, 301, 468
Lsp1109I GCAGC 1 cut(s) 265
LweI GCATC 1 cut(s) 439
MabI ACCWGGT 1 cut(s) 120
MaeII ACGT 1 cut(s) 421
MaeIII GTNAC 2 cut(s) 74, 374
MalI GATC 2 cut(s) 81, 456
MboI GATC 2 cut(s) 79, 454
MboII GAAGA 5 cut(s) 100, 103, 304, 336, 452
MhlI GDGCHC 2 cut(s) 294, 312
MluCI AATT 1 cut(s) 349
MmeI TCCRAC 1 cut(s) 210
MnlI CCTC 6 cut(s) 78, 174, 187, 289, 359, 387
MroXI GAANNNNTTC 1 cut(s) 331
MseI TTAA 4 cut(s) 111, 135, 344, 360
MspA1I CMGCKG 1 cut(s) 256
MspI CCGG 2 cut(s) 242, 288
MspR9I CCNGG 3 cut(s) 122, 242, 289
MvaI CCWGG 1 cut(s) 122
NciI CCSGG 2 cut(s) 242, 289
NdeII GATC 2 cut(s) 79, 454
NlaIII CATG 3 cut(s) 41, 131, 273
NmuCI GTSAC 1 cut(s) 374
PaeR7I CTCGAG 1 cut(s) 293
PciSI GCTCTTC 1 cut(s) 317
PcsI WCGNNNNNNNCGW 1 cut(s) 444
PdmI GAANNNNTTC 1 cut(s) 331
PfeI GAWTC 3 cut(s) 26, 332, 443
PflMI CCANNNNNTGG 1 cut(s) 275
PkrI GCNGC 1 cut(s) 255
PsiI TTATAA 1 cut(s) 508
Psp124BI GAGCTC 1 cut(s) 312
Psp6I CCWGG 1 cut(s) 120
PspGI CCWGG 1 cut(s) 120
PspPI GGNCC 1 cut(s) 396
PspXI VCTCGAGB 1 cut(s) 293
SacI GAGCTC 1 cut(s) 312
SapI GCTCTTC 1 cut(s) 317
SaqAI TTAA 4 cut(s) 111, 135, 344, 360
SatI GCNGC 1 cut(s) 254
Sau3AI GATC 2 cut(s) 79, 454
Sau96I GGNCC 1 cut(s) 396
ScrFI CCNGG 3 cut(s) 122, 242, 289
SduI GDGCHC 2 cut(s) 294, 312
SetI ASST 7 cut(s) 18, 99, 123, 166, 312, 424, 429
SexAI ACCWGGT 1 cut(s) 120
SfaNI GCATC 1 cut(s) 439
SfcI CTRYAG 1 cut(s) 282
Sfr274I CTCGAG 1 cut(s) 293
SlaI CTCGAG 1 cut(s) 293
SmlI CTYRAG 1 cut(s) 293
SmoI CTYRAG 1 cut(s) 293
Sse9I AATT 1 cut(s) 349
SsiI CCGC 2 cut(s) 256, 390
SstI GAGCTC 1 cut(s) 312
StyD4I CCNGG 3 cut(s) 120, 240, 287
TaaI ACNGT 4 cut(s) 109, 140, 403, 480
TaiI ACGT 1 cut(s) 424
TaqI TCGA 1 cut(s) 294
TasI AATT 1 cut(s) 349
TfiI GAWTC 3 cut(s) 26, 332, 443
Tru1I TTAA 4 cut(s) 111, 135, 344, 360
Tru9I TTAA 4 cut(s) 111, 135, 344, 360
TseFI GTSAC 1 cut(s) 374
TseI GCWGC 1 cut(s) 253
Tsp45I GTSAC 1 cut(s) 374
TspDTI ATGAA 3 cut(s) 26, 116, 346
TspGWI ACGGA 1 cut(s) 486
Van91I CCANNNNNTGG 1 cut(s) 275
XhoI CTCGAG 1 cut(s) 293
XmnI GAANNNNTTC 1 cut(s) 331
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.