pycom08g07780

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr8
OG0017515
Physical Location & Seq
Reverse (-)
6263238 .. 6263693
456 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom08g07780.1

Sequence Viewer

Length: 396 bp
ATGGGTACAAAGAGACAGAAGCTAGTGCATGTGGTCCACTGCAAGTCAGAGGAATTCGGCACTCCTCTATATCCAACCCTAGCAGCAAACACTGACATTACTGTCCTGGTCAACCTTGGTCAAAGTTCCTTCAAGTTTGCCCCGGCCAATGCTCAGAGGACAGCTAACCCTTGCTTTGTGGGCCCTCTTGTGAGATCCTCTGCTGCTGCATTCTATGAAGATAGCATGGAGCTTTTCTCCATGGACAGATCAATTGACTCCCAGTGGCTCAACAGGTGCACAACCAAGGGCAGCCGAAACCCTAGTCACGAACTGGAGTTTGATGAGGAATCCGATGCTGATTTGTTTGAGATTGTCTTGGAGAGTAGTGGAAGATCCCCACACACGATATCGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SPRY

Protein Analysis

132

Amino Acids

14.51

Weight (kDa)

5.28

Isoelectric Point (pI)

57.36

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017515)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G06536
fragaria_vesca FvH4_2g33990
malus_domestica MD08G1095800.v1.1 MD15G1078600.v1.1
prunus_persica Prupe.1G431800_v2.0.a1
pyrus_communis pycom08g07780 pycom08g07790 pycom15g07320
rosa_chinensis RchiOBHm_Chr6g0308391
rosa_multiflora Rmu_co8453189.1_g000001 Rmu_sc0005523.1_g000018
rosa_samantha Rh6AG475900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 101
AclWI GGATC 2 cut(s) 189, 369
AcoI YGGCCR 1 cut(s) 144
AcsI RAATTY 1 cut(s) 53
AfaI GTAC 1 cut(s) 7
AgsI TTSAA 1 cut(s) 133
AjnI CCWGG 1 cut(s) 105
AluBI AGCT 3 cut(s) 22, 164, 232
AluI AGCT 3 cut(s) 22, 164, 232
Alw21I GWGCWC 1 cut(s) 281
Alw26I GTCTC 1 cut(s) 7
Alw44I GTGCAC 1 cut(s) 277
AlwI GGATC 2 cut(s) 189, 369
AoxI GGCC 2 cut(s) 144, 181
ApaI GGGCCC 1 cut(s) 185
ApaLI GTGCAC 1 cut(s) 277
ApeKI GCWGC 4 cut(s) 83, 203, 206, 291
ApoI RAATTY 1 cut(s) 53
ArsI GACNNNNNNTTYG 2 cut(s) 289, 321
AspS9I GGNCC 3 cut(s) 34, 181, 182
AsuC2I CCSGG 1 cut(s) 143
AvaII GGWCC 1 cut(s) 34
BaeGI GKGCMC 2 cut(s) 185, 281
BanII GRGCYC 1 cut(s) 185
Bbv12I GWGCWC 1 cut(s) 281
BbvI GCAGC 4 cut(s) 95, 190, 193, 303
BciT130I CCWGG 1 cut(s) 107
BcnI CCSGG 1 cut(s) 143
BcoDI GTCTC 1 cut(s) 7
BfaI CTAG 3 cut(s) 23, 80, 303
BisI GCNGC 4 cut(s) 84, 204, 207, 292
BlsI GCNGC 4 cut(s) 85, 205, 208, 293
Bme1390I CCNGG 2 cut(s) 107, 143
Bme18I GGWCC 1 cut(s) 34
BmgT120I GGNCC 3 cut(s) 34, 181, 182
BmiI GGNNCC 1 cut(s) 183
BmrFI CCNGG 2 cut(s) 107, 143
BmrI ACTGGG 1 cut(s) 256
BmsI GCATC 1 cut(s) 325
BmuI ACTGGG 1 cut(s) 256
BplI GAGNNNNNCTC 2 cut(s) 221, 253
BpmI CTGGAG 1 cut(s) 335
BpuMI CCSGG 1 cut(s) 143
BsaJI CCNNGG 4 cut(s) 115, 141, 240, 285
Bse1I ACTGG 2 cut(s) 262, 318
BseBI CCWGG 1 cut(s) 107
BseDI CCNNGG 4 cut(s) 115, 141, 240, 285
BseMII CTCAG 1 cut(s) 167
BseNI ACTGG 2 cut(s) 262, 318
BseRI GAGGAG 1 cut(s) 54
BseSI GKGCMC 2 cut(s) 185, 281
BseXI GCAGC 4 cut(s) 95, 190, 193, 303
BshFI GGCC 2 cut(s) 146, 183
BsiHKAI GWGCWC 1 cut(s) 281
BsiSI CCGG 1 cut(s) 143
BsmAI GTCTC 1 cut(s) 7
BsmI GAATGC 1 cut(s) 209
BsnI GGCC 2 cut(s) 146, 183
Bsp120I GGGCCC 1 cut(s) 181
Bsp1286I GDGCHC 2 cut(s) 185, 281
Bsp143I GATC 3 cut(s) 194, 248, 374
Bsp19I CCATGG 1 cut(s) 240
BspANI GGCC 2 cut(s) 146, 183
BspCNI CTCAG 1 cut(s) 166
BspLI GGNNCC 1 cut(s) 183
BspPI GGATC 2 cut(s) 189, 369
BsrI ACTGG 2 cut(s) 262, 318
BssECI CCNNGG 4 cut(s) 115, 141, 240, 285
BssMI GATC 3 cut(s) 194, 248, 374
BssT1I CCWWGG 3 cut(s) 115, 240, 285
Bst2UI CCWGG 1 cut(s) 107
Bst4CI ACNGT 1 cut(s) 103
BstDEI CTNAG 1 cut(s) 153
BstDSI CCRYGG 1 cut(s) 240
BstKTI GATC 3 cut(s) 197, 251, 377
BstMAI GTCTC 1 cut(s) 7
BstMBI GATC 3 cut(s) 194, 248, 374
BstMWI GCNNNNNNNGC 1 cut(s) 180
BstNI CCWGG 1 cut(s) 107
BstNSI RCATGY 1 cut(s) 32
BstSCI CCNGG 2 cut(s) 105, 141
BstSLI GKGCMC 2 cut(s) 185, 281
BstV1I GCAGC 4 cut(s) 95, 190, 193, 303
BstX2I RGATCY 2 cut(s) 194, 374
BstYI RGATCY 2 cut(s) 194, 374
BsuRI GGCC 2 cut(s) 146, 183
BtgI CCRYGG 1 cut(s) 240
BtsI GCAGTG 1 cut(s) 37
BtsIMutI CAGTG 3 cut(s) 37, 90, 269
Cfr13I GGNCC 3 cut(s) 34, 181, 182
Csp6I GTAC 1 cut(s) 6
CviAII CATG 3 cut(s) 29, 226, 241
CviJI RGCY 7 cut(s) 22, 146, 164, 183, 232, 268, 294
CviKI_1 RGCY 7 cut(s) 22, 146, 164, 183, 232, 268, 294
CviQI GTAC 1 cut(s) 6
DdeI CTNAG 1 cut(s) 153
DpnI GATC 3 cut(s) 196, 250, 376
DpnII GATC 3 cut(s) 194, 248, 374
DrdI GACNNNNNNGTC 1 cut(s) 101
DseDI GACNNNNNNGTC 1 cut(s) 101
EaeI YGGCCR 1 cut(s) 144
Eco130I CCWWGG 3 cut(s) 115, 240, 285
Eco24I GRGCYC 1 cut(s) 185
Eco32I GATATC 1 cut(s) 390
Eco47I GGWCC 1 cut(s) 34
EcoO109I RGGNCCY 1 cut(s) 182
EcoRI GAATTC 1 cut(s) 53
EcoRII CCWGG 1 cut(s) 105
EcoRV GATATC 1 cut(s) 390
EcoT14I CCWWGG 3 cut(s) 115, 240, 285
EcoT38I GRGCYC 1 cut(s) 185
ErhI CCWWGG 3 cut(s) 115, 240, 285
FaeI CATG 3 cut(s) 32, 229, 244
FaiI YATR 5 cut(s) 30, 70, 216, 227, 242
FatI CATG 3 cut(s) 28, 225, 240
Fnu4HI GCNGC 4 cut(s) 84, 204, 207, 292
FriOI GRGCYC 1 cut(s) 185
Fsp4HI GCNGC 4 cut(s) 84, 204, 207, 292
FspBI CTAG 3 cut(s) 23, 80, 303
GluI GCNGC 4 cut(s) 84, 204, 207, 292
GsuI CTGGAG 1 cut(s) 335
HaeIII GGCC 2 cut(s) 146, 183
HapII CCGG 1 cut(s) 143
Hin1II CATG 3 cut(s) 32, 229, 244
HincII GTYRAC 1 cut(s) 112
HindII GTYRAC 1 cut(s) 112
HinfI GANTC 2 cut(s) 257, 329
HpaII CCGG 1 cut(s) 143
Hpy166II GTNNAC 3 cut(s) 37, 112, 279
Hpy188I TCNGA 3 cut(s) 49, 156, 334
Hpy188III TCNNGA 1 cut(s) 308
Hpy8I GTNNAC 3 cut(s) 37, 112, 279
HpyAV CCTTC 1 cut(s) 139
HpyCH4III ACNGT 1 cut(s) 103
HpyCH4V TGCA 4 cut(s) 28, 42, 209, 279
HpyF10VI GCNNNNNNNGC 1 cut(s) 180
HpyF3I CTNAG 1 cut(s) 153
Hsp92II CATG 3 cut(s) 32, 229, 244
Kzo9I GATC 3 cut(s) 194, 248, 374
LmnI GCTCC 1 cut(s) 229
LpnPI CCDG 6 cut(s) 92, 119, 156, 259, 275, 299
Lsp1109I GCAGC 4 cut(s) 95, 190, 193, 303
LweI GCATC 1 cut(s) 325
MaeI CTAG 3 cut(s) 23, 80, 303
MaeIII GTNAC 1 cut(s) 305
MalI GATC 3 cut(s) 196, 250, 376
MboI GATC 3 cut(s) 194, 248, 374
MboII GAAGA 2 cut(s) 230, 384
MfeI CAATTG 1 cut(s) 252
MflI RGATCY 2 cut(s) 194, 374
MhlI GDGCHC 2 cut(s) 185, 281
MluCI AATT 2 cut(s) 53, 252
MlyI GAGTC 1 cut(s) 251
MmeI TCCRAC 1 cut(s) 98
MnlI CCTC 6 cut(s) 43, 75, 150, 195, 208, 319
MspI CCGG 1 cut(s) 143
MspR9I CCNGG 2 cut(s) 107, 143
MunI CAATTG 1 cut(s) 252
Mva1269I GAATGC 1 cut(s) 209
MvaI CCWGG 1 cut(s) 107
MwoI GCNNNNNNNGC 1 cut(s) 180
NciI CCSGG 1 cut(s) 143
NcoI CCATGG 1 cut(s) 240
NdeII GATC 3 cut(s) 194, 248, 374
NlaIII CATG 3 cut(s) 32, 229, 244
NlaIV GGNNCC 1 cut(s) 183
NmuCI GTSAC 1 cut(s) 305
NspI RCATGY 1 cut(s) 32
PctI GAATGC 1 cut(s) 209
PfeI GAWTC 1 cut(s) 329
PkrI GCNGC 4 cut(s) 85, 205, 208, 293
PleI GAGTC 1 cut(s) 251
PpsI GAGTC 1 cut(s) 251
Psp6I CCWGG 1 cut(s) 105
PspGI CCWGG 1 cut(s) 105
PspN4I GGNNCC 1 cut(s) 183
PspOMI GGGCCC 1 cut(s) 181
PspPI GGNCC 3 cut(s) 34, 181, 182
PsuI RGATCY 2 cut(s) 194, 374
RsaI GTAC 1 cut(s) 7
RsaNI GTAC 1 cut(s) 6
SatI GCNGC 4 cut(s) 84, 204, 207, 292
Sau3AI GATC 3 cut(s) 194, 248, 374
Sau96I GGNCC 3 cut(s) 34, 181, 182
SchI GAGTC 1 cut(s) 251
ScrFI CCNGG 2 cut(s) 107, 143
SduI GDGCHC 2 cut(s) 185, 281
SetI ASST 5 cut(s) 24, 117, 166, 234, 278
SfaNI GCATC 1 cut(s) 325
SinI GGWCC 1 cut(s) 34
Sse9I AATT 2 cut(s) 53, 252
SspMI CTAG 3 cut(s) 23, 80, 303
StyD4I CCNGG 2 cut(s) 105, 141
StyI CCWWGG 3 cut(s) 115, 240, 285
TaaI ACNGT 1 cut(s) 103
TasI AATT 2 cut(s) 53, 252
TfiI GAWTC 1 cut(s) 329
TscAI CASTG 3 cut(s) 44, 97, 269
TseFI GTSAC 1 cut(s) 305
TseI GCWGC 4 cut(s) 83, 203, 206, 291
Tsp45I GTSAC 1 cut(s) 305
TspDTI ATGAA 1 cut(s) 231
TspRI CASTG 3 cut(s) 44, 97, 269
VneI GTGCAC 1 cut(s) 277
VpaK11BI GGWCC 1 cut(s) 34
XapI RAATTY 1 cut(s) 53
XceI RCATGY 1 cut(s) 32
XspI CTAG 3 cut(s) 23, 80, 303
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.