Rmu_co8453189.1_g000001

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8453189.1
OG0017515
Physical Location & Seq
Reverse (-)
396 .. 1352
957 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8453189.1_g000001.1.cds

Sequence Viewer

Length: 957 bp
atggggcagatacaattggttgcggcgttgctagtgtgtcttggagtactcctcgctgcctttgttgttctggtactatggcggttggattgctgtaagaaacggaaagaaaccggtaaccagacgacgccgaggagggtgaatattagaagtgaccagagcttggaagccggaattgccaagcttcataataatcagcaacagggtctgcaggttgatcatgtttcaagtaagaaaacggggaataactattacatgtatcgtcgtggggtttcgggaaaagcatcccctctttttagttggtctgatcatccctcctccgtcaccgacgccgtcgaaaacgggtggtcacgatttgcttttgcgaccacttacacgtcgtcaccgtccacgcgatcgcggcggctgttggggttgtgcgccgttggtgagcacagagtgagagagacggagccggagattagttgggaagtttgtcaaggatcggtggatttcatgcagaagatcagattaaactccggcctgaaaagagtgttgaattccgggagcaccaccgcagctgctgcctctgtgattaggaccgctcttccattgccgggtcctcctttagggaacaactcatttccccaagaggcctatttcgagatcacggttttgttttctcttggagatgaagtaaatagtgaaagtgagaagaccaagctcattaaagagaagttcattgagatgccgagttcagaatctttagtacatgtcactagtagtgcgcagagaaataataaaattgaggaactgaagcttggtgttatagatgaacatgatcagagaaaagaagaagccgtattactgtcattggggctcactacaggtggcttgcttccgatgaaacttccgggaagctatccgggaagcatcggattcggatccaacggttctgtccatctcgatggtaagtga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SPRY

Protein Analysis

318

Amino Acids

34.73

Weight (kDa)

8.9

Isoelectric Point (pI)

46.69

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017515)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G06536
fragaria_vesca FvH4_2g33990
malus_domestica MD08G1095800.v1.1 MD15G1078600.v1.1
prunus_persica Prupe.1G431800_v2.0.a1
pyrus_communis pycom08g07780 pycom08g07790 pycom15g07320
rosa_chinensis RchiOBHm_Chr6g0308391
rosa_multiflora Rmu_co8453189.1_g000001 Rmu_sc0005523.1_g000018
rosa_samantha Rh6AG475900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 768
Acc36I ACCTGC 1 cut(s) 202
AccB7I CCANNNNNTGG 1 cut(s) 163
AccBSI CCGCTC 1 cut(s) 584
AccII CGCG 2 cut(s) 394, 400
AciI CCGC 6 cut(s) 23, 82, 400, 403, 555, 582
AclWI GGATC 3 cut(s) 490, 918, 931
AcsI RAATTY 1 cut(s) 538
AcuI CTGAAG 1 cut(s) 815
AcyI GRCGYC 2 cut(s) 128, 330
AdeI CACNNNGTG 1 cut(s) 439
AfaI GTAC 3 cut(s) 48, 75, 750
AfiI CCNNNNNNNGG 3 cut(s) 163, 596, 608
AflIII ACRYGT 3 cut(s) 255, 375, 751
AgeI ACCGGT 1 cut(s) 113
AgsI TTSAA 2 cut(s) 228, 538
AhlI ACTAGT 1 cut(s) 758
AjiI CACGTC 1 cut(s) 378
AjuI GAANNNNNNNTTGG 2 cut(s) 783, 815
AluBI AGCT 6 cut(s) 162, 184, 560, 703, 799, 900
AluI AGCT 6 cut(s) 162, 184, 560, 703, 799, 900
Alw21I GWGCWC 2 cut(s) 435, 551
Alw26I GTCTC 1 cut(s) 440
AlwI GGATC 3 cut(s) 490, 918, 931
AlwNI CAGNNNCTG 2 cut(s) 208, 563
AoxI GGCC 2 cut(s) 520, 633
ApeKI GCWGC 4 cut(s) 56, 557, 560, 563
ApoI RAATTY 1 cut(s) 538
AsiGI ACCGGT 1 cut(s) 113
AsiSI GCGATCGC 1 cut(s) 398
AspLEI GCGC 2 cut(s) 422, 769
AspS9I GGNCC 2 cut(s) 579, 599
AsuC2I CCSGG 4 cut(s) 544, 597, 894, 906
AsuHPI GGTGA 4 cut(s) 151, 316, 375, 440
AvaII GGWCC 2 cut(s) 579, 599
BamHI GGATCC 1 cut(s) 923
BanII GRGCYC 1 cut(s) 861
BarI GAAGNNNNNNTAC 2 cut(s) 828, 860
BbsI GAAGAC 1 cut(s) 701
Bbv12I GWGCWC 2 cut(s) 435, 551
BbvI GCAGC 4 cut(s) 43, 547, 550, 569
BccI CCATC 2 cut(s) 941, 948
BceAI ACGGC 3 cut(s) 317, 407, 824
BcgI CGANNNNNNTGC 2 cut(s) 901, 935
BclI TGATCA 3 cut(s) 217, 307, 820
BcnI CCSGG 4 cut(s) 544, 597, 894, 906
BcoDI GTCTC 1 cut(s) 440
BcuI ACTAGT 1 cut(s) 758
BfaI CTAG 2 cut(s) 32, 759
BfmI CTRYAG 2 cut(s) 209, 864
BfuAI ACCTGC 1 cut(s) 202
BisI GCNGC 7 cut(s) 24, 57, 401, 404, 558, 561, 564
BlsI GCNGC 7 cut(s) 25, 58, 402, 405, 559, 562, 565
BmcAI AGTACT 1 cut(s) 48
Bme1390I CCNGG 4 cut(s) 544, 597, 894, 906
Bme18I GGWCC 2 cut(s) 579, 599
BmgBI CACGTC 1 cut(s) 378
BmgT120I GGNCC 2 cut(s) 579, 599
BmiI GGNNCC 3 cut(s) 453, 600, 925
BmrFI CCNGG 4 cut(s) 544, 597, 894, 906
BmsI GCATC 3 cut(s) 293, 717, 921
BpiI GAAGAC 1 cut(s) 701
BplI GAGNNNNNCTC 2 cut(s) 36, 68
BpuMI CCSGG 4 cut(s) 544, 597, 894, 906
BsaBI GATNNNNATC 1 cut(s) 922
BsaHI GRCGYC 2 cut(s) 128, 330
BsaJI CCNNGG 1 cut(s) 131
BsaWI WCCGGW 1 cut(s) 113
BsaXI ACNNNNNCTCC 2 cut(s) 660, 690
Bsc4I CCNNNNNNNGG 3 cut(s) 163, 596, 608
Bse118I RCCGGY 1 cut(s) 113
Bse3DI GCAATG 1 cut(s) 590
Bse8I GATNNNNATC 1 cut(s) 922
BseDI CCNNGG 1 cut(s) 131
BseGI GGATG 2 cut(s) 284, 310
BseJI GATNNNNATC 1 cut(s) 922
BseLI CCNNNNNNNGG 3 cut(s) 163, 596, 608
BseMI GCAATG 1 cut(s) 590
BseRI GAGGAG 3 cut(s) 41, 148, 307
BseXI GCAGC 4 cut(s) 43, 547, 550, 569
Bsh1236I CGCG 2 cut(s) 394, 400
Bsh1285I CGRYCG 1 cut(s) 398
BshFI GGCC 2 cut(s) 522, 635
BshTI ACCGGT 1 cut(s) 113
BsiEI CGRYCG 1 cut(s) 398
BsiHKAI GWGCWC 2 cut(s) 435, 551
BsiSI CCGG 8 cut(s) 114, 171, 455, 519, 543, 596, 893, 905
BslI CCNNNNNNNGG 3 cut(s) 163, 596, 608
BsmAI GTCTC 1 cut(s) 440
BsmBI CGTCTC 1 cut(s) 440
BsnI GGCC 2 cut(s) 522, 635
Bsp1286I GDGCHC 3 cut(s) 435, 551, 861
Bsp143I GATC 8 cut(s) 217, 307, 395, 482, 504, 645, 820, 923
BspACI CCGC 6 cut(s) 23, 82, 400, 403, 555, 582
BspANI GGCC 2 cut(s) 522, 635
BspFNI CGCG 2 cut(s) 394, 400
BspLI GGNNCC 3 cut(s) 453, 600, 925
BspMAI CTGCAG 1 cut(s) 213
BspMI ACCTGC 1 cut(s) 202
BspPI GGATC 3 cut(s) 490, 918, 931
BspQI GCTCTTC 1 cut(s) 591
BsrBI CCGCTC 1 cut(s) 584
BsrDI GCAATG 1 cut(s) 590
BsrFI RCCGGY 1 cut(s) 113
BssAI RCCGGY 1 cut(s) 113
BssECI CCNNGG 1 cut(s) 131
BssMI GATC 8 cut(s) 217, 307, 395, 482, 504, 645, 820, 923
BssNI GRCGYC 2 cut(s) 128, 330
Bst4CI ACNGT 4 cut(s) 387, 652, 849, 932
Bst6I CTCTTC 1 cut(s) 591
BstACI GRCGYC 2 cut(s) 128, 330
BstAPI GCANNNNNTGC 1 cut(s) 563
BstC8I GCNNGC 1 cut(s) 875
BstEII GGTNACC 1 cut(s) 116
BstENI CCTNNNNNAGG 1 cut(s) 606
BstF5I GGATG 2 cut(s) 284, 310
BstFNI CGCG 2 cut(s) 394, 400
BstHHI GCGC 2 cut(s) 422, 769
BstKTI GATC 8 cut(s) 220, 310, 398, 485, 507, 648, 823, 926
BstMAI GTCTC 1 cut(s) 440
BstMBI GATC 8 cut(s) 217, 307, 395, 482, 504, 645, 820, 923
BstMCI CGRYCG 1 cut(s) 398
BstMWI GCNNNNNNNGC 3 cut(s) 176, 400, 563
BstNSI RCATGY 2 cut(s) 259, 755
BstPI GGTNACC 1 cut(s) 116
BstSCI CCNGG 4 cut(s) 542, 595, 892, 904
BstSFI CTRYAG 2 cut(s) 209, 864
BstUI CGCG 2 cut(s) 394, 400
BstV1I GCAGC 4 cut(s) 43, 547, 550, 569
BstV2I GAAGAC 1 cut(s) 701
BstX2I RGATCY 1 cut(s) 923
BstXI CCANNNNNNTGG 1 cut(s) 947
BstYI RGATCY 1 cut(s) 923
BsuRI GGCC 2 cut(s) 522, 635
BtrI CACGTC 1 cut(s) 378
BtsCI GGATG 2 cut(s) 284, 310
BveI ACCTGC 1 cut(s) 202
Cac8I GCNNGC 1 cut(s) 875
CaiI CAGNNNCTG 2 cut(s) 208, 563
CfoI GCGC 2 cut(s) 422, 769
Cfr10I RCCGGY 1 cut(s) 113
Cfr13I GGNCC 2 cut(s) 579, 599
CseI GACGC 2 cut(s) 136, 338
Csp6I GTAC 3 cut(s) 47, 74, 749
CspAI ACCGGT 1 cut(s) 113
CviAII CATG 5 cut(s) 221, 256, 496, 752, 818
CviQI GTAC 3 cut(s) 47, 74, 749
DpnI GATC 8 cut(s) 219, 309, 397, 484, 506, 647, 822, 925
DpnII GATC 8 cut(s) 217, 307, 395, 482, 504, 645, 820, 923
DraIII CACNNNGTG 1 cut(s) 439
Eam1104I CTCTTC 1 cut(s) 591
EarI CTCTTC 1 cut(s) 591
Eco147I AGGCCT 1 cut(s) 635
Eco24I GRGCYC 1 cut(s) 861
Eco47I GGWCC 2 cut(s) 579, 599
Eco57I CTGAAG 1 cut(s) 815
Eco91I GGTNACC 1 cut(s) 116
EcoNI CCTNNNNNAGG 1 cut(s) 606
EcoO109I RGGNCCY 1 cut(s) 599
EcoO65I GGTNACC 1 cut(s) 116
EcoRI GAATTC 1 cut(s) 538
EcoT38I GRGCYC 1 cut(s) 861
Esp3I CGTCTC 1 cut(s) 440
FaeI CATG 5 cut(s) 224, 259, 499, 755, 821
FaiI YATR 8 cut(s) 79, 189, 222, 257, 497, 753, 809, 819
FatI CATG 5 cut(s) 220, 255, 495, 751, 817
FbaI TGATCA 3 cut(s) 217, 307, 820
Fnu4HI GCNGC 7 cut(s) 24, 57, 401, 404, 558, 561, 564
FokI GGATG 2 cut(s) 271, 297
FriOI GRGCYC 1 cut(s) 861
Fsp4HI GCNGC 7 cut(s) 24, 57, 401, 404, 558, 561, 564
FspBI CTAG 2 cut(s) 32, 759
FspI TGCGCA 1 cut(s) 768
GlaI GCGC 2 cut(s) 421, 768
GluI GCNGC 7 cut(s) 24, 57, 401, 404, 558, 561, 564
HaeIII GGCC 2 cut(s) 522, 635
HapII CCGG 8 cut(s) 114, 171, 455, 519, 543, 596, 893, 905
HgaI GACGC 2 cut(s) 136, 338
HhaI GCGC 2 cut(s) 422, 769
Hin1I GRCGYC 2 cut(s) 128, 330
Hin1II CATG 5 cut(s) 224, 259, 499, 755, 821
Hin6I GCGC 2 cut(s) 420, 767
HinP1I GCGC 2 cut(s) 420, 767
HindIII AAGCTT 2 cut(s) 182, 797
HinfI GANTC 2 cut(s) 740, 918
HpaII CCGG 8 cut(s) 114, 171, 455, 519, 543, 596, 893, 905
HphI GGTGA 4 cut(s) 151, 316, 375, 440
Hpy166II GTNNAC 1 cut(s) 390
Hpy188I TCNGA 7 cut(s) 307, 509, 739, 825, 882, 917, 923
Hpy188III TCNNGA 4 cut(s) 276, 351, 643, 944
Hpy8I GTNNAC 1 cut(s) 390
Hpy99I CGWCG 5 cut(s) 130, 267, 332, 338, 382
HpyCH4III ACNGT 4 cut(s) 387, 652, 849, 932
HpyCH4IV ACGT 1 cut(s) 377
HpyCH4V TGCA 2 cut(s) 211, 499
HpyF10VI GCNNNNNNNGC 3 cut(s) 176, 400, 563
HpySE526I ACGT 1 cut(s) 377
Hsp92I GRCGYC 2 cut(s) 128, 330
Hsp92II CATG 5 cut(s) 224, 259, 499, 755, 821
HspAI GCGC 2 cut(s) 420, 767
Ksp22I TGATCA 3 cut(s) 217, 307, 820
Kzo9I GATC 8 cut(s) 217, 307, 395, 482, 504, 645, 820, 923
LguI GCTCTTC 1 cut(s) 591
LmnI GCTCC 2 cut(s) 451, 546
Lsp1109I GCAGC 4 cut(s) 43, 547, 550, 569
LweI GCATC 3 cut(s) 293, 717, 921
MaeI CTAG 2 cut(s) 32, 759
MaeII ACGT 1 cut(s) 377
MaeIII GTNAC 6 cut(s) 116, 152, 322, 348, 381, 754
MalI GATC 8 cut(s) 219, 309, 397, 484, 506, 647, 822, 925
MbiI CCGCTC 1 cut(s) 584
MboI GATC 8 cut(s) 217, 307, 395, 482, 504, 645, 820, 923
MboII GAAGA 4 cut(s) 514, 578, 706, 845
MfeI CAATTG 1 cut(s) 14
MflI RGATCY 1 cut(s) 923
MhlI GDGCHC 3 cut(s) 435, 551, 861
MluCI AATT 4 cut(s) 14, 174, 538, 783
MmeI TCCRAC 2 cut(s) 66, 951
MseI TTAA 2 cut(s) 512, 708
MslI CAYNNNNRTG 2 cut(s) 725, 945
MspA1I CMGCKG 1 cut(s) 560
MspI CCGG 8 cut(s) 114, 171, 455, 519, 543, 596, 893, 905
MspR9I CCNGG 4 cut(s) 544, 597, 894, 906
MunI CAATTG 1 cut(s) 14
MvnI CGCG 2 cut(s) 394, 400
MwoI GCNNNNNNNGC 3 cut(s) 176, 400, 563
NciI CCSGG 4 cut(s) 544, 597, 894, 906
NdeII GATC 8 cut(s) 217, 307, 395, 482, 504, 645, 820, 923
NlaIII CATG 5 cut(s) 224, 259, 499, 755, 821
NlaIV GGNNCC 3 cut(s) 453, 600, 925
NmeAIII GCCGAG 2 cut(s) 156, 756
NmuCI GTSAC 5 cut(s) 152, 322, 348, 381, 754
NsbI TGCGCA 1 cut(s) 768
NspI RCATGY 2 cut(s) 259, 755
PceI AGGCCT 1 cut(s) 635
PciI ACATGT 2 cut(s) 255, 751
PciSI GCTCTTC 1 cut(s) 591
PcsI WCGNNNNNNNCGW 1 cut(s) 383
PfeI GAWTC 2 cut(s) 740, 918
PflFI GACNNNGTC 1 cut(s) 332
PflMI CCANNNNNTGG 1 cut(s) 163
PfoI TCCNGGA 3 cut(s) 542, 892, 904
PinAI ACCGGT 1 cut(s) 113
PkrI GCNGC 7 cut(s) 25, 58, 402, 405, 559, 562, 565
Ple19I CGATCG 1 cut(s) 398
PpuMI RGGWCCY 1 cut(s) 599
PscI ACATGT 2 cut(s) 255, 751
Psp5II RGGWCCY 1 cut(s) 599
PspEI GGTNACC 1 cut(s) 116
PspN4I GGNNCC 3 cut(s) 453, 600, 925
PspPI GGNCC 2 cut(s) 579, 599
PspPPI RGGWCCY 1 cut(s) 599
PstI CTGCAG 1 cut(s) 213
PstNI CAGNNNCTG 2 cut(s) 208, 563
PsuI RGATCY 1 cut(s) 923
PsyI GACNNNGTC 1 cut(s) 332
PvuI CGATCG 1 cut(s) 398
PvuII CAGCTG 1 cut(s) 560
RgaI GCGATCGC 1 cut(s) 398
RsaI GTAC 3 cut(s) 48, 75, 750
RsaNI GTAC 3 cut(s) 47, 74, 749
RseI CAYNNNNRTG 2 cut(s) 725, 945
SapI GCTCTTC 1 cut(s) 591
SaqAI TTAA 2 cut(s) 512, 708
SatI GCNGC 7 cut(s) 24, 57, 401, 404, 558, 561, 564
Sau3AI GATC 8 cut(s) 217, 307, 395, 482, 504, 645, 820, 923
Sau96I GGNCC 2 cut(s) 579, 599
ScaI AGTACT 1 cut(s) 48
ScrFI CCNGG 4 cut(s) 544, 597, 894, 906
SduI GDGCHC 3 cut(s) 435, 551, 861
SetI ASST 9 cut(s) 164, 186, 216, 380, 562, 705, 801, 871, 902
SfaAI GCGATCGC 1 cut(s) 398
SfaNI GCATC 3 cut(s) 293, 717, 921
SfcI CTRYAG 2 cut(s) 209, 864
SgfI GCGATCGC 1 cut(s) 398
SinI GGWCC 2 cut(s) 579, 599
SmiMI CAYNNNNRTG 2 cut(s) 725, 945
SpeI ACTAGT 1 cut(s) 758
Sse9I AATT 4 cut(s) 14, 174, 538, 783
SseBI AGGCCT 1 cut(s) 635
SsiI CCGC 6 cut(s) 23, 82, 400, 403, 555, 582
SspI AATATT 1 cut(s) 145
SspMI CTAG 2 cut(s) 32, 759
StuI AGGCCT 1 cut(s) 635
StyD4I CCNGG 4 cut(s) 542, 595, 892, 904
TaaI ACNGT 4 cut(s) 387, 652, 849, 932
TaiI ACGT 1 cut(s) 380
TaqI TCGA 3 cut(s) 336, 642, 945
TasI AATT 4 cut(s) 14, 174, 538, 783
TatI WGTACW 2 cut(s) 46, 748
TauI GCSGC 3 cut(s) 26, 403, 406
TfiI GAWTC 2 cut(s) 740, 918
Tru1I TTAA 2 cut(s) 512, 708
Tru9I TTAA 2 cut(s) 512, 708
TseFI GTSAC 5 cut(s) 152, 322, 348, 381, 754
TseI GCWGC 4 cut(s) 56, 557, 560, 563
Tsp45I GTSAC 5 cut(s) 152, 322, 348, 381, 754
TspDTI ATGAA 6 cut(s) 176, 484, 687, 709, 828, 899
TspGWI ACGGA 3 cut(s) 118, 310, 464
Tth111I GACNNNGTC 1 cut(s) 332
Van91I CCANNNNNTGG 1 cut(s) 163
VpaK11BI GGWCC 2 cut(s) 579, 599
XagI CCTNNNNNAGG 1 cut(s) 606
XapI RAATTY 1 cut(s) 538
XceI RCATGY 2 cut(s) 259, 755
XspI CTAG 2 cut(s) 32, 759
ZrmI AGTACT 1 cut(s) 48
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.