pycom08g07790

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr8
OG0017515
Physical Location & Seq
Reverse (-)
6265161 .. 6265997
837 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom08g07790.1

Sequence Viewer

Length: 795 bp
ATGCCATGCCCACATTTTGACCCCATTAATTTTCTTTTCTTTCTTCTCCTCCTTCTCCCTGCCTTTCTTGAACCAGTCAGTCCACGCCCTCTCCCTTCCGGCTCCTCCTTTGCCGAAAACACAAAAATTCTCGTTAGCCCATTTGAGAGAAGATCGAAACACATGTTCGGATTGAAGCATGCCGCGGTGATTGCAGTCAGCGCAGGAGTTGTTGCGGTGGTTGTTTTGATCGTATTATGGCGATGGAATTGTTACAAGAAACGTAAACAAAATGCTGGCAGCGGCGGCATGACAACGGCGGCCGCAGCGACGACGGTTGTTAGAGCACAGAGCCTGCAGGATGGAATTGCAAGGCTTCATCACCACCAACCAAGCAAGAGCATGTCGACCGGGAACAACTATTACCGCCGGGGGGTTTCTGGAAAGCCGCTGTTCAGCTGGGGTAATCATCCGACGTCCGTCACGGACGCCGTGGAAAACGGGTGGTCACGATTCGGCTTCACAAATTATCAATCTTCCGGTTCGACAAGGTCGAGACTTTTGGGGATGTGCGTGGCCGGCGATCAAGTTAGGGAGGCAGAGCCGGAGATAAGCTGGGAAGTGTGTCAAGGATCAGCCGATTTCATGCAGAAAATTCGACTCAATCCTGGGTTGAAAAAAGTGCTCAATTTAAGCGCTTCTAGTTCTGCTTCTGCTGCCGCCTCTGTGATGAAAACTGTTCTTCCTCTGCCCGGCCCTCCTCTTGGAAACAATTCCTTCCCGCAAGAAGCTTATTTCGATCGATCACAATTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SPRY

Protein Analysis

265

Amino Acids

28.77

Weight (kDa)

9.88

Isoelectric Point (pI)

48.03

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017515)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G06536
fragaria_vesca FvH4_2g33990
malus_domestica MD08G1095800.v1.1 MD15G1078600.v1.1
prunus_persica Prupe.1G431800_v2.0.a1
pyrus_communis pycom08g07780 pycom08g07790 pycom15g07320
rosa_chinensis RchiOBHm_Chr6g0308391
rosa_multiflora Rmu_co8453189.1_g000001 Rmu_sc0005523.1_g000018
rosa_samantha Rh6AG475900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 458
AccI GTMKAC 1 cut(s) 386
AccII CGCG 1 cut(s) 185
AclWI GGATC 1 cut(s) 619
AcoI YGGCCR 2 cut(s) 300, 555
AcsI RAATTY 2 cut(s) 126, 633
AcyI GRCGYC 2 cut(s) 455, 468
AfeI AGCGCT 1 cut(s) 676
AfiI CCNNNNNNNGG 3 cut(s) 412, 731, 743
AflIII ACRYGT 1 cut(s) 162
AgsI TTSAA 3 cut(s) 71, 175, 655
AjnI CCWGG 1 cut(s) 646
AluBI AGCT 3 cut(s) 438, 594, 770
AluI AGCT 3 cut(s) 438, 594, 770
Alw21I GWGCWC 2 cut(s) 328, 666
Alw26I GTCTC 1 cut(s) 529
AlwI GGATC 1 cut(s) 619
AlwNI CAGNNNCTG 1 cut(s) 334
Aor51HI AGCGCT 1 cut(s) 676
AoxI GGCC 3 cut(s) 300, 555, 733
ApeKI GCWGC 3 cut(s) 279, 305, 695
ApoI RAATTY 2 cut(s) 126, 633
AseI ATTAAT 1 cut(s) 27
Asp700I GAANNNNTTC 1 cut(s) 751
AspLEI GCGC 2 cut(s) 203, 677
AspS9I GGNCC 1 cut(s) 734
AsuC2I CCSGG 3 cut(s) 391, 410, 732
AsuHPI GGTGA 2 cut(s) 199, 353
Bbv12I GWGCWC 2 cut(s) 328, 666
BbvI GCAGC 3 cut(s) 291, 317, 682
BccI CCATC 2 cut(s) 237, 335
BceAI ACGGC 2 cut(s) 312, 455
BcgI CGANNNNNNTGC 2 cut(s) 617, 651
BciT130I CCWGG 1 cut(s) 648
BcnI CCSGG 3 cut(s) 391, 410, 732
BcoDI GTCTC 1 cut(s) 529
BfaI CTAG 1 cut(s) 681
BfmI CTRYAG 1 cut(s) 335
BfoI RGCGCY 1 cut(s) 678
Bme1390I CCNGG 4 cut(s) 391, 410, 648, 732
BmgT120I GGNCC 1 cut(s) 734
BmiI GGNNCC 1 cut(s) 103
BmrFI CCNGG 4 cut(s) 391, 410, 648, 732
BoxI GACNNNNGTC 1 cut(s) 458
BpuMI CCSGG 3 cut(s) 391, 410, 732
Bsa29I ATCGAT 1 cut(s) 781
BsaHI GRCGYC 2 cut(s) 455, 468
BsaJI CCNNGG 4 cut(s) 183, 409, 471, 647
BsaWI WCCGGW 1 cut(s) 518
BsaXI ACNNNNNCTCC 2 cut(s) 75, 105
Bsc4I CCNNNNNNNGG 3 cut(s) 412, 731, 743
Bse118I RCCGGY 1 cut(s) 557
Bse1I ACTGG 1 cut(s) 74
BseBI CCWGG 1 cut(s) 648
BseCI ATCGAT 1 cut(s) 781
BseDI CCNNGG 4 cut(s) 183, 409, 471, 647
BseGI GGATG 3 cut(s) 346, 448, 552
BseLI CCNNNNNNNGG 3 cut(s) 412, 731, 743
BseNI ACTGG 1 cut(s) 74
BseRI GAGGAG 3 cut(s) 38, 94, 729
BseX3I CGGCCG 1 cut(s) 300
BseXI GCAGC 3 cut(s) 291, 317, 682
BseYI CCCAGC 2 cut(s) 438, 594
Bsh1236I CGCG 1 cut(s) 185
Bsh1285I CGRYCG 3 cut(s) 303, 390, 781
BshFI GGCC 3 cut(s) 302, 557, 735
BshVI ATCGAT 1 cut(s) 781
BsiEI CGRYCG 3 cut(s) 303, 390, 781
BsiHKAI GWGCWC 2 cut(s) 328, 666
BsiSI CCGG 7 cut(s) 99, 390, 409, 519, 558, 584, 732
BslI CCNNNNNNNGG 3 cut(s) 412, 731, 743
BsmAI GTCTC 1 cut(s) 529
BsnI GGCC 3 cut(s) 302, 557, 735
Bsp1286I GDGCHC 2 cut(s) 328, 666
Bsp143I GATC 6 cut(s) 152, 228, 562, 611, 778, 782
BspANI GGCC 3 cut(s) 302, 557, 735
BspDI ATCGAT 1 cut(s) 781
BspFNI CGCG 1 cut(s) 185
BspLI GGNNCC 1 cut(s) 103
BspMAI CTGCAG 1 cut(s) 339
BspPI GGATC 1 cut(s) 619
BsrFI RCCGGY 1 cut(s) 557
BsrI ACTGG 1 cut(s) 74
BssAI RCCGGY 1 cut(s) 557
BssECI CCNNGG 4 cut(s) 183, 409, 471, 647
BssMI GATC 6 cut(s) 152, 228, 562, 611, 778, 782
BssNI GRCGYC 2 cut(s) 455, 468
Bst2UI CCWGG 1 cut(s) 648
Bst4CI ACNGT 2 cut(s) 316, 718
BstACI GRCGYC 2 cut(s) 455, 468
BstC8I GCNNGC 4 cut(s) 180, 277, 335, 559
BstDSI CCRYGG 2 cut(s) 183, 471
BstF5I GGATG 3 cut(s) 346, 448, 552
BstFNI CGCG 1 cut(s) 185
BstH2I RGCGCY 1 cut(s) 678
BstHHI GCGC 2 cut(s) 203, 677
BstKTI GATC 6 cut(s) 155, 231, 565, 614, 781, 785
BstMAI GTCTC 1 cut(s) 529
BstMBI GATC 6 cut(s) 152, 228, 562, 611, 778, 782
BstMCI CGRYCG 3 cut(s) 303, 390, 781
BstMWI GCNNNNNNNGC 6 cut(s) 191, 200, 285, 305, 558, 695
BstNI CCWGG 1 cut(s) 648
BstNSI RCATGY 3 cut(s) 166, 182, 385
BstPAI GACNNNNGTC 1 cut(s) 458
BstSCI CCNGG 4 cut(s) 389, 408, 646, 730
BstSFI CTRYAG 1 cut(s) 335
BstUI CGCG 1 cut(s) 185
BstV1I GCAGC 3 cut(s) 291, 317, 682
BstZI CGGCCG 1 cut(s) 300
Bsu15I ATCGAT 1 cut(s) 781
BsuRI GGCC 3 cut(s) 302, 557, 735
BsuTUI ATCGAT 1 cut(s) 781
BtgI CCRYGG 2 cut(s) 183, 471
BtgZI GCGATG 1 cut(s) 256
BtsCI GGATG 3 cut(s) 346, 448, 552
Cac8I GCNNGC 4 cut(s) 180, 277, 335, 559
CaiI CAGNNNCTG 1 cut(s) 334
CciNI GCGGCCGC 1 cut(s) 300
CfoI GCGC 2 cut(s) 203, 677
Cfr10I RCCGGY 1 cut(s) 557
Cfr13I GGNCC 1 cut(s) 734
Cfr42I CCGCGG 1 cut(s) 186
ClaI ATCGAT 1 cut(s) 781
CseI GACGC 1 cut(s) 476
CviAII CATG 6 cut(s) 6, 163, 179, 289, 382, 625
DpnI GATC 6 cut(s) 154, 230, 564, 613, 780, 784
DpnII GATC 6 cut(s) 152, 228, 562, 611, 778, 782
EaeI YGGCCR 2 cut(s) 300, 555
EagI CGGCCG 1 cut(s) 300
EclXI CGGCCG 1 cut(s) 300
Eco47III AGCGCT 1 cut(s) 676
Eco52I CGGCCG 1 cut(s) 300
EcoRII CCWGG 1 cut(s) 646
FaeI CATG 6 cut(s) 9, 166, 182, 292, 385, 628
FaiI YATR 7 cut(s) 7, 164, 180, 238, 290, 383, 626
FatI CATG 6 cut(s) 5, 162, 178, 288, 381, 624
FauI CCCGC 1 cut(s) 768
FblI GTMKAC 1 cut(s) 386
FokI GGATG 3 cut(s) 353, 435, 559
FspBI CTAG 1 cut(s) 681
GlaI GCGC 2 cut(s) 202, 676
GsaI CCCAGC 2 cut(s) 442, 598
HaeII RGCGCY 1 cut(s) 678
HaeIII GGCC 3 cut(s) 302, 557, 735
HapII CCGG 7 cut(s) 99, 390, 409, 519, 558, 584, 732
HgaI GACGC 1 cut(s) 476
HhaI GCGC 2 cut(s) 203, 677
Hin1I GRCGYC 2 cut(s) 455, 468
Hin1II CATG 6 cut(s) 9, 166, 182, 292, 385, 628
Hin6I GCGC 2 cut(s) 201, 675
HinP1I GCGC 2 cut(s) 201, 675
HincII GTYRAC 1 cut(s) 387
HindII GTYRAC 1 cut(s) 387
HindIII AAGCTT 1 cut(s) 768
HinfI GANTC 2 cut(s) 492, 639
HpaII CCGG 7 cut(s) 99, 390, 409, 519, 558, 584, 732
HphI GGTGA 2 cut(s) 199, 353
Hpy166II GTNNAC 3 cut(s) 83, 266, 387
Hpy188I TCNGA 2 cut(s) 170, 453
Hpy188III TCNNGA 4 cut(s) 68, 420, 489, 534
Hpy8I GTNNAC 3 cut(s) 83, 266, 387
Hpy99I CGWCG 3 cut(s) 313, 316, 457
HpyAV CCTTC 3 cut(s) 62, 105, 766
HpyCH4III ACNGT 2 cut(s) 316, 718
HpyCH4IV ACGT 2 cut(s) 262, 455
HpyCH4V TGCA 4 cut(s) 194, 337, 350, 628
HpyF10VI GCNNNNNNNGC 6 cut(s) 191, 200, 285, 305, 558, 695
HpySE526I ACGT 2 cut(s) 262, 455
Hsp92I GRCGYC 2 cut(s) 455, 468
Hsp92II CATG 6 cut(s) 9, 166, 182, 292, 385, 628
HspAI GCGC 2 cut(s) 201, 675
KroI GCCGGC 1 cut(s) 557
KroNI GCCGGC 1 cut(s) 559
KspI CCGCGG 1 cut(s) 186
Kzo9I GATC 6 cut(s) 152, 228, 562, 611, 778, 782
LmnI GCTCC 1 cut(s) 107
Lsp1109I GCAGC 3 cut(s) 291, 317, 682
MaeI CTAG 1 cut(s) 681
MaeII ACGT 2 cut(s) 262, 455
MaeIII GTNAC 3 cut(s) 251, 460, 486
MalI GATC 6 cut(s) 154, 230, 564, 613, 780, 784
MboI GATC 6 cut(s) 152, 228, 562, 611, 778, 782
MboII GAAGA 4 cut(s) 35, 162, 507, 713
MhlI GDGCHC 2 cut(s) 328, 666
MluCI AATT 9 cut(s) 28, 126, 247, 345, 505, 633, 667, 751, 788
MlyI GAGTC 1 cut(s) 633
MmeI TCCRAC 1 cut(s) 476
MnlI CCTC 8 cut(s) 59, 99, 115, 568, 712, 735, 747, 750
MroNI GCCGGC 1 cut(s) 557
MroXI GAANNNNTTC 1 cut(s) 751
MseI TTAA 2 cut(s) 27, 671
MspA1I CMGCKG 4 cut(s) 185, 282, 430, 438
MspI CCGG 7 cut(s) 99, 390, 409, 519, 558, 584, 732
MspR9I CCNGG 4 cut(s) 391, 410, 648, 732
MvaI CCWGG 1 cut(s) 648
MvnI CGCG 1 cut(s) 185
MwoI GCNNNNNNNGC 6 cut(s) 191, 200, 285, 305, 558, 695
NaeI GCCGGC 1 cut(s) 559
NciI CCSGG 3 cut(s) 391, 410, 732
NdeII GATC 6 cut(s) 152, 228, 562, 611, 778, 782
NgoMIV GCCGGC 1 cut(s) 557
NlaIII CATG 6 cut(s) 9, 166, 182, 292, 385, 628
NlaIV GGNNCC 1 cut(s) 103
NmuCI GTSAC 2 cut(s) 460, 486
NotI GCGGCCGC 1 cut(s) 300
NspI RCATGY 3 cut(s) 166, 182, 385
PaeI GCATGC 1 cut(s) 182
PciI ACATGT 1 cut(s) 162
PcsI WCGNNNNNNNCGW 1 cut(s) 530
PdiI GCCGGC 1 cut(s) 559
PdmI GAANNNNTTC 1 cut(s) 751
PfeI GAWTC 1 cut(s) 492
PflFI GACNNNGTC 1 cut(s) 529
Ple19I CGATCG 1 cut(s) 781
PleI GAGTC 1 cut(s) 633
PpsI GAGTC 1 cut(s) 633
PscI ACATGT 1 cut(s) 162
PshAI GACNNNNGTC 1 cut(s) 458
PshBI ATTAAT 1 cut(s) 27
Psp6I CCWGG 1 cut(s) 646
PspFI CCCAGC 2 cut(s) 438, 594
PspGI CCWGG 1 cut(s) 646
PspN4I GGNNCC 1 cut(s) 103
PspPI GGNCC 1 cut(s) 734
PsrI GAACNNNNNNTAC 2 cut(s) 386, 418
PstI CTGCAG 1 cut(s) 339
PstNI CAGNNNCTG 1 cut(s) 334
PsyI GACNNNGTC 1 cut(s) 529
PvuI CGATCG 1 cut(s) 781
PvuII CAGCTG 1 cut(s) 438
SacII CCGCGG 1 cut(s) 186
SalI GTCGAC 1 cut(s) 385
SaqAI TTAA 2 cut(s) 27, 671
Sau3AI GATC 6 cut(s) 152, 228, 562, 611, 778, 782
Sau96I GGNCC 1 cut(s) 734
SbfI CCTGCAGG 1 cut(s) 339
SchI GAGTC 1 cut(s) 633
ScrFI CCNGG 4 cut(s) 391, 410, 648, 732
SdaI CCTGCAGG 1 cut(s) 339
SduI GDGCHC 2 cut(s) 328, 666
SetI ASST 6 cut(s) 265, 440, 458, 533, 596, 772
SfcI CTRYAG 1 cut(s) 335
Sfr303I CCGCGG 1 cut(s) 186
SgrBI CCGCGG 1 cut(s) 186
SphI GCATGC 1 cut(s) 182
Sse8387I CCTGCAGG 1 cut(s) 339
Sse9I AATT 9 cut(s) 28, 126, 247, 345, 505, 633, 667, 751, 788
SspMI CTAG 1 cut(s) 681
StyD4I CCNGG 4 cut(s) 389, 408, 646, 730
TaaI ACNGT 2 cut(s) 316, 718
TaiI ACGT 2 cut(s) 265, 458
TaqI TCGA 7 cut(s) 155, 386, 524, 533, 637, 777, 781
TasI AATT 9 cut(s) 28, 126, 247, 345, 505, 633, 667, 751, 788
TauI GCSGC 7 cut(s) 185, 285, 288, 302, 305, 430, 701
TfiI GAWTC 1 cut(s) 492
Tru1I TTAA 2 cut(s) 27, 671
Tru9I TTAA 2 cut(s) 27, 671
TseFI GTSAC 2 cut(s) 460, 486
TseI GCWGC 3 cut(s) 279, 305, 695
Tsp45I GTSAC 2 cut(s) 460, 486
TspDTI ATGAA 3 cut(s) 347, 613, 725
TspGWI ACGGA 2 cut(s) 448, 479
Tth111I GACNNNGTC 1 cut(s) 529
VspI ATTAAT 1 cut(s) 27
XapI RAATTY 2 cut(s) 126, 633
XceI RCATGY 3 cut(s) 166, 182, 385
XmiI GTMKAC 1 cut(s) 386
XmnI GAANNNNTTC 1 cut(s) 751
XspI CTAG 1 cut(s) 681
ZraI GACGTC 1 cut(s) 456
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.