Prupe.1G431800_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0017515
Physical Location & Seq
Reverse (-)
36980622 .. 36983331
2710 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G431800.1

Sequence Viewer

Length: 1419 bp
ATGTTTGGATTGGTACATGGTGTGGTGGTGCTGGTGTGCATACCAATTGTTGCAGTCATTGTTGGTCTCGTTTTATGGCGATGGAATTGTTACAGGAAAAATAGACAAAGTGTTGGTGGCAGAACGGAAAATACTAGACCTGAGGGCTTGCAAGCTGGGATTGCAAAGCTTCATCATCATCAGCCAGCTGGTTTAGAAAGCAAGAGACCAACAGGAAACAATTACTATCGACGTGGGGTTTCAGGGAAGCCTCTGTTTAGTTGGGCTAATCATCCAACGTCCATCACTGATGCTGTCGAAAATGGATGGTCTCGATTCGCTTTCACAAGTTTCATGTCATCCCCTTCAACAAAATCAAGGCTTTTGGGTTTGTGCGCGGTTGGTGATCAGAGAATAAGGGAGACAGAGCCGGAGATAAGCTGGGAAGTGTGTCAAGGTTCGGCTGATTTCATGCAGAAGATTAGGCTAAATTCTGGGTTGAAAAAGGTGTTGAATTTAGGCAGTTCTAATTCTACGGCTGCTGCCTCTGTGATCAGGACAGCTCTGCCTTTGCCAGGCCCTGCCTTGGGGAACAACTCTTTCCCGCAAGAAACTTATTTTGAGATCACAATTTTGTATTCTCGTGGGGATGAATTGAGCGAGTCAAATGGGAAGGTGAAGGAAGGTGAAAAGACTAAACTCATTCAAGAGACTAAAGAAGAAAACCCAGGTTCAGATTCTTTGGTTCATGTCACTAGCAGTCAAAGAATCAGCAGAATTGAGGAATTAAAGCTGAGTGTTAAAGAGGATCATCATAATCATGGCAAAGGTGAGGCTATTTTGTTGTCAGTTGGGCTCACTGTAGGAGGCTCTCTTCCTCTCAAACTTCCAGGCAGCTACCCCGGAAGCATCGGATTCGGCTCCAATGGTTCAGTCCATCTTGATGGGATTAAACTTGTCTTTGAATCAGAAAAAGCAACATGGGGAAGAATAGACAAAGTTATTGGGTGTGGGTTTGATCCTAGACAAAAGAAAGTATACTTCACTGTAGAATCAGAGCTGGTCCATGTGATCCATTGCAAGTCAGAGGAATTTAGCACTCCCCTCTATCCAACTCTTGCAGCAAACACTGACATGACAGTCTTGGTCAATTTGGGACAAAGTGTCTTCAAGTATGCCCCAGCCAATGCCCAAAGGACACCCAATCCTTGCTTTGTTGGCCCTCTCGTTAGATCCTCAGCTGCTGCTTTTTATGAAGACAGCATGGAGCTCTTCTCAATGGAAAGAATTGACTCTCAGTGGCTCAACAGATGTACAACCAAAGGCAGCCAAAACCCAAGTGCTGCAAACCATGAACTGGAGTTTGATGAGGAATCTGAGGCTGATTTATTTGAGATTGTCTTGGAGAGTTGTGGTAGATCCCCACACGTAGTATCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SPRY

Protein Analysis

473

Amino Acids

51.73

Weight (kDa)

6.72

Isoelectric Point (pI)

40.41

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017515)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G06536
fragaria_vesca FvH4_2g33990
malus_domestica MD08G1095800.v1.1 MD15G1078600.v1.1
prunus_persica Prupe.1G431800_v2.0.a1
pyrus_communis pycom08g07780 pycom08g07790 pycom15g07320
rosa_chinensis RchiOBHm_Chr6g0308391
rosa_multiflora Rmu_co8453189.1_g000001 Rmu_sc0005523.1_g000018
rosa_samantha Rh6AG475900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 1118
AccB7I CCANNNNNTGG 1 cut(s) 1336
AccI GTMKAC 1 cut(s) 1017
AccII CGCG 1 cut(s) 377
AciI CCGC 2 cut(s) 377, 584
AclWI GGATC 5 cut(s) 795, 992, 1045, 1206, 1392
AcsI RAATTY 3 cut(s) 469, 493, 1070
AfaI GTAC 2 cut(s) 15, 1294
AfiI CCNNNNNNNGG 4 cut(s) 554, 565, 566, 1336
AflIII ACRYGT 1 cut(s) 1405
AgsI TTSAA 6 cut(s) 348, 481, 493, 686, 944, 1150
AhdI GACNNNNNGTC 1 cut(s) 1142
AjiI CACGTC 1 cut(s) 233
AjnI CCWGG 3 cut(s) 553, 706, 868
Alw21I GWGCWC 1 cut(s) 1251
Alw26I GTCTC 5 cut(s) 71, 199, 315, 395, 683
AlwI GGATC 5 cut(s) 795, 992, 1045, 1206, 1392
AlwNI CAGNNNCTG 2 cut(s) 560, 1223
AoxI GGCC 2 cut(s) 556, 1198
ApeKI GCWGC 8 cut(s) 518, 521, 873, 1100, 1220, 1223, 1305, 1322
ApoI RAATTY 3 cut(s) 469, 493, 1070
AspLEI GCGC 1 cut(s) 377
AspS9I GGNCC 3 cut(s) 557, 1042, 1199
AsuC2I CCSGG 1 cut(s) 882
AsuHPI GGTGA 4 cut(s) 395, 667, 677, 821
AvaII GGWCC 1 cut(s) 1042
AxyI CCTNAGG 1 cut(s) 141
BanII GRGCYC 2 cut(s) 837, 1251
BauI CACGAG 1 cut(s) 621
BbsI GAAGAC 2 cut(s) 1138, 1242
Bbv12I GWGCWC 1 cut(s) 1251
BbvCI CCTCAGC 1 cut(s) 1216
BbvI GCAGC 8 cut(s) 505, 508, 885, 1112, 1207, 1210, 1309, 1317
BccI CCATC 5 cut(s) 75, 290, 300, 917, 924
BceAI ACGGC 1 cut(s) 531
BcgI CGANNNNNNTGC 2 cut(s) 877, 911
BciT130I CCWGG 3 cut(s) 555, 708, 870
BclI TGATCA 2 cut(s) 385, 531
BcnI CCSGG 1 cut(s) 882
BcoDI GTCTC 5 cut(s) 71, 199, 315, 395, 683
BfaI CTAG 3 cut(s) 135, 735, 1002
BfmI CTRYAG 2 cut(s) 840, 1026
BisI GCNGC 8 cut(s) 519, 522, 874, 1101, 1221, 1224, 1306, 1323
BlsI GCNGC 8 cut(s) 520, 523, 875, 1102, 1222, 1225, 1307, 1324
Bme1390I CCNGG 4 cut(s) 555, 708, 870, 882
Bme18I GGWCC 1 cut(s) 1042
BmeRI GACNNNNNGTC 1 cut(s) 1142
BmgBI CACGTC 1 cut(s) 233
BmgT120I GGNCC 3 cut(s) 557, 1042, 1199
BmiI GGNNCC 1 cut(s) 901
BmrFI CCNGG 4 cut(s) 555, 708, 870, 882
BmsI GCATC 2 cut(s) 280, 897
BpiI GAAGAC 2 cut(s) 1138, 1242
BplI GAGNNNNNCTC 2 cut(s) 1238, 1270
BpmI CTGGAG 1 cut(s) 1358
Bpu10I CCTNAGC 1 cut(s) 1216
BpuMI CCSGG 1 cut(s) 882
BsaAI YACGTR 1 cut(s) 1408
BsaI GGTCTC 3 cut(s) 71, 199, 315
BsaJI CCNNGG 3 cut(s) 564, 706, 880
Bsc4I CCNNNNNNNGG 4 cut(s) 554, 565, 566, 1336
Bse1I ACTGG 1 cut(s) 1341
Bse21I CCTNAGG 1 cut(s) 141
Bse3DI GCAATG 1 cut(s) 1054
BseBI CCWGG 3 cut(s) 555, 708, 870
BseDI CCNNGG 3 cut(s) 564, 706, 880
BseGI GGATG 4 cut(s) 271, 311, 338, 634
BseLI CCNNNNNNNGG 4 cut(s) 554, 565, 566, 1336
BseMI GCAATG 1 cut(s) 1054
BseMII CTCAG 5 cut(s) 132, 764, 1230, 1289, 1347
BseNI ACTGG 1 cut(s) 1341
BseXI GCAGC 8 cut(s) 505, 508, 885, 1112, 1207, 1210, 1309, 1317
BseYI CCCAGC 3 cut(s) 155, 420, 1159
Bsh1236I CGCG 1 cut(s) 377
BshFI GGCC 2 cut(s) 558, 1200
BsiHKAI GWGCWC 1 cut(s) 1251
BsiSI CCGG 2 cut(s) 410, 882
BslFI GGGAC 1 cut(s) 1149
BslI CCNNNNNNNGG 4 cut(s) 554, 565, 566, 1336
BsmAI GTCTC 5 cut(s) 71, 199, 315, 395, 683
BsmFI GGGAC 1 cut(s) 1149
BsnI GGCC 2 cut(s) 558, 1200
Bso31I GGTCTC 3 cut(s) 71, 199, 315
Bsp1286I GDGCHC 2 cut(s) 837, 1251
Bsp1407I TGTACA 1 cut(s) 1292
Bsp143I GATC 8 cut(s) 385, 531, 603, 787, 997, 1050, 1211, 1397
BspACI CCGC 2 cut(s) 377, 584
BspANI GGCC 2 cut(s) 558, 1200
BspCNI CTCAG 5 cut(s) 133, 765, 1229, 1288, 1348
BspFNI CGCG 1 cut(s) 377
BspLI GGNNCC 1 cut(s) 901
BspPI GGATC 5 cut(s) 795, 992, 1045, 1206, 1392
BspQI GCTCTTC 1 cut(s) 1256
BspTNI GGTCTC 3 cut(s) 71, 199, 315
BsrDI GCAATG 1 cut(s) 1054
BsrGI TGTACA 1 cut(s) 1292
BsrI ACTGG 1 cut(s) 1341
BssECI CCNNGG 3 cut(s) 564, 706, 880
BssMI GATC 8 cut(s) 385, 531, 603, 787, 997, 1050, 1211, 1397
BssNAI GTATAC 1 cut(s) 1018
BssSI CACGAG 1 cut(s) 621
BssT1I CCWWGG 1 cut(s) 564
Bst1107I GTATAC 1 cut(s) 1018
Bst2BI CACGAG 1 cut(s) 621
Bst2UI CCWGG 3 cut(s) 555, 708, 870
Bst4CI ACNGT 3 cut(s) 841, 1027, 1120
Bst6I CTCTTC 2 cut(s) 858, 1256
BstAUI TGTACA 1 cut(s) 1292
BstBAI YACGTR 1 cut(s) 1408
BstC8I GCNNGC 3 cut(s) 149, 153, 186
BstDEI CTNAG 5 cut(s) 141, 773, 1216, 1275, 1356
BstENI CCTNNNNNAGG 1 cut(s) 552
BstF5I GGATG 4 cut(s) 271, 311, 338, 634
BstFNI CGCG 1 cut(s) 377
BstHHI GCGC 1 cut(s) 377
BstKTI GATC 8 cut(s) 388, 534, 606, 790, 1000, 1053, 1214, 1400
BstMAI GTCTC 5 cut(s) 71, 199, 315, 395, 683
BstMBI GATC 8 cut(s) 385, 531, 603, 787, 997, 1050, 1211, 1397
BstMWI GCNNNNNNNGC 2 cut(s) 161, 1197
BstNI CCWGG 3 cut(s) 555, 708, 870
BstSCI CCNGG 4 cut(s) 553, 706, 868, 880
BstSFI CTRYAG 2 cut(s) 840, 1026
BstUI CGCG 1 cut(s) 377
BstV1I GCAGC 8 cut(s) 505, 508, 885, 1112, 1207, 1210, 1309, 1317
BstV2I GAAGAC 2 cut(s) 1138, 1242
BstX2I RGATCY 2 cut(s) 1211, 1397
BstXI CCANNNNNNTGG 1 cut(s) 923
BstYI RGATCY 2 cut(s) 1211, 1397
BstZ17I GTATAC 1 cut(s) 1018
Bsu36I CCTNAGG 1 cut(s) 141
BsuRI GGCC 2 cut(s) 558, 1200
BtgZI GCGATG 1 cut(s) 94
BtrI CACGTC 1 cut(s) 233
BtsCI GGATG 4 cut(s) 271, 311, 338, 634
BtsIMutI CAGTG 5 cut(s) 285, 837, 1023, 1107, 1283
Cac8I GCNNGC 3 cut(s) 149, 153, 186
CaiI CAGNNNCTG 2 cut(s) 560, 1223
CfoI GCGC 1 cut(s) 377
Cfr13I GGNCC 3 cut(s) 557, 1042, 1199
Csp6I GTAC 2 cut(s) 14, 1293
CviQI GTAC 2 cut(s) 14, 1293
DdeI CTNAG 5 cut(s) 141, 773, 1216, 1275, 1356
DpnI GATC 8 cut(s) 387, 533, 605, 789, 999, 1052, 1213, 1399
DpnII GATC 8 cut(s) 385, 531, 603, 787, 997, 1050, 1211, 1397
DrdI GACNNNNNNGTC 1 cut(s) 1118
DriI GACNNNNNGTC 1 cut(s) 1142
DseDI GACNNNNNNGTC 1 cut(s) 1118
Eam1104I CTCTTC 2 cut(s) 858, 1256
Eam1105I GACNNNNNGTC 1 cut(s) 1142
EarI CTCTTC 2 cut(s) 858, 1256
Ecl136II GAGCTC 1 cut(s) 1249
Eco130I CCWWGG 1 cut(s) 564
Eco24I GRGCYC 2 cut(s) 837, 1251
Eco31I GGTCTC 3 cut(s) 71, 199, 315
Eco47I GGWCC 1 cut(s) 1042
Eco53kI GAGCTC 1 cut(s) 1249
Eco81I CCTNAGG 1 cut(s) 141
EcoICRI GAGCTC 1 cut(s) 1249
EcoNI CCTNNNNNAGG 1 cut(s) 552
EcoO109I RGGNCCY 1 cut(s) 557
EcoRII CCWGG 3 cut(s) 553, 706, 868
EcoT14I CCWWGG 1 cut(s) 564
EcoT38I GRGCYC 2 cut(s) 837, 1251
ErhI CCWWGG 1 cut(s) 564
FaqI GGGAC 1 cut(s) 1149
FauI CCCGC 1 cut(s) 591
FbaI TGATCA 2 cut(s) 385, 531
FblI GTMKAC 1 cut(s) 1017
Fnu4HI GCNGC 8 cut(s) 519, 522, 874, 1101, 1221, 1224, 1306, 1323
FokI GGATG 4 cut(s) 258, 318, 325, 641
FriOI GRGCYC 2 cut(s) 837, 1251
Fsp4HI GCNGC 8 cut(s) 519, 522, 874, 1101, 1221, 1224, 1306, 1323
FspBI CTAG 3 cut(s) 135, 735, 1002
GlaI GCGC 1 cut(s) 376
GluI GCNGC 8 cut(s) 519, 522, 874, 1101, 1221, 1224, 1306, 1323
GsaI CCCAGC 3 cut(s) 159, 424, 1163
GsuI CTGGAG 1 cut(s) 1358
HaeIII GGCC 2 cut(s) 558, 1200
HapII CCGG 2 cut(s) 410, 882
HhaI GCGC 1 cut(s) 377
Hin6I GCGC 1 cut(s) 375
HinP1I GCGC 1 cut(s) 375
HindIII AAGCTT 1 cut(s) 167
HinfI GANTC 9 cut(s) 315, 641, 716, 747, 894, 944, 1031, 1271, 1352
HpaII CCGG 2 cut(s) 410, 882
HphI GGTGA 4 cut(s) 395, 667, 677, 821
Hpy166II GTNNAC 1 cut(s) 1018
Hpy188I TCNGA 7 cut(s) 390, 715, 893, 949, 1036, 1066, 1357
Hpy188III TCNNGA 4 cut(s) 312, 535, 686, 920
Hpy8I GTNNAC 1 cut(s) 1018
Hpy99I CGWCG 1 cut(s) 234
HpyAV CCTTC 4 cut(s) 354, 646, 652, 656
HpyCH4III ACNGT 3 cut(s) 841, 1027, 1120
HpyCH4IV ACGT 3 cut(s) 232, 278, 1407
HpyCH4V TGCA 8 cut(s) 39, 53, 151, 164, 454, 1059, 1100, 1325
HpyF10VI GCNNNNNNNGC 2 cut(s) 161, 1197
HpyF3I CTNAG 5 cut(s) 141, 773, 1216, 1275, 1356
HpySE526I ACGT 3 cut(s) 232, 278, 1407
HspAI GCGC 1 cut(s) 375
Ksp22I TGATCA 2 cut(s) 385, 531
Kzo9I GATC 8 cut(s) 385, 531, 603, 787, 997, 1050, 1211, 1397
LguI GCTCTTC 1 cut(s) 1256
LmnI GCTCC 2 cut(s) 905, 1246
Lsp1109I GCAGC 8 cut(s) 505, 508, 885, 1112, 1207, 1210, 1309, 1317
LweI GCATC 2 cut(s) 280, 897
MaeI CTAG 3 cut(s) 135, 735, 1002
MaeII ACGT 3 cut(s) 232, 278, 1407
MaeIII GTNAC 2 cut(s) 89, 730
MalI GATC 8 cut(s) 387, 533, 605, 789, 999, 1052, 1213, 1399
MboI GATC 8 cut(s) 385, 531, 603, 787, 997, 1050, 1211, 1397
MboII GAAGA 7 cut(s) 469, 710, 845, 978, 1138, 1243, 1247
MfeI CAATTG 1 cut(s) 45
MflI RGATCY 2 cut(s) 1211, 1397
MhlI GDGCHC 2 cut(s) 837, 1251
MlyI GAGTC 2 cut(s) 650, 1265
MmeI TCCRAC 2 cut(s) 299, 1115
MseI TTAA 3 cut(s) 767, 780, 930
MslI CAYNNNNRTG 3 cut(s) 798, 921, 1112
MspA1I CMGCKG 2 cut(s) 188, 1220
MspI CCGG 2 cut(s) 410, 882
MspR9I CCNGG 4 cut(s) 555, 708, 870, 882
MunI CAATTG 1 cut(s) 45
MvaI CCWGG 3 cut(s) 555, 708, 870
MvnI CGCG 1 cut(s) 377
MwoI GCNNNNNNNGC 2 cut(s) 161, 1197
NciI CCSGG 1 cut(s) 882
NdeII GATC 8 cut(s) 385, 531, 603, 787, 997, 1050, 1211, 1397
NlaIV GGNNCC 1 cut(s) 901
NmuCI GTSAC 1 cut(s) 730
PciSI GCTCTTC 1 cut(s) 1256
PfeI GAWTC 7 cut(s) 315, 716, 747, 894, 944, 1031, 1352
PflMI CCANNNNNTGG 1 cut(s) 1336
PkrI GCNGC 8 cut(s) 520, 523, 875, 1102, 1222, 1225, 1307, 1324
PleI GAGTC 2 cut(s) 649, 1265
PpsI GAGTC 2 cut(s) 649, 1265
Ppu21I YACGTR 1 cut(s) 1408
Psp124BI GAGCTC 1 cut(s) 1251
Psp6I CCWGG 3 cut(s) 553, 706, 868
PspFI CCCAGC 3 cut(s) 155, 420, 1159
PspGI CCWGG 3 cut(s) 553, 706, 868
PspN4I GGNNCC 1 cut(s) 901
PspPI GGNCC 3 cut(s) 557, 1042, 1199
PsrI GAACNNNNNNTAC 2 cut(s) 115, 147
PstNI CAGNNNCTG 2 cut(s) 560, 1223
PsuI RGATCY 2 cut(s) 1211, 1397
PvuII CAGCTG 2 cut(s) 188, 1220
RsaI GTAC 2 cut(s) 15, 1294
RsaNI GTAC 2 cut(s) 14, 1293
RseI CAYNNNNRTG 3 cut(s) 798, 921, 1112
SacI GAGCTC 1 cut(s) 1251
SapI GCTCTTC 1 cut(s) 1256
SaqAI TTAA 3 cut(s) 767, 780, 930
SatI GCNGC 8 cut(s) 519, 522, 874, 1101, 1221, 1224, 1306, 1323
Sau3AI GATC 8 cut(s) 385, 531, 603, 787, 997, 1050, 1211, 1397
Sau96I GGNCC 3 cut(s) 557, 1042, 1199
SchI GAGTC 2 cut(s) 650, 1265
ScrFI CCNGG 4 cut(s) 555, 708, 870, 882
SduI GDGCHC 2 cut(s) 837, 1251
SfaNI GCATC 2 cut(s) 280, 897
SfcI CTRYAG 2 cut(s) 840, 1026
SinI GGWCC 1 cut(s) 1042
SmiMI CAYNNNNRTG 3 cut(s) 798, 921, 1112
SsiI CCGC 2 cut(s) 377, 584
SspMI CTAG 3 cut(s) 135, 735, 1002
SstI GAGCTC 1 cut(s) 1251
StyD4I CCNGG 4 cut(s) 553, 706, 868, 880
StyI CCWWGG 1 cut(s) 564
TaaI ACNGT 3 cut(s) 841, 1027, 1120
TaiI ACGT 3 cut(s) 235, 281, 1410
TaqI TCGA 3 cut(s) 229, 297, 313
TatI WGTACW 1 cut(s) 1292
TfiI GAWTC 7 cut(s) 315, 716, 747, 894, 944, 1031, 1352
Tru1I TTAA 3 cut(s) 767, 780, 930
Tru9I TTAA 3 cut(s) 767, 780, 930
TscAI CASTG 5 cut(s) 292, 844, 1030, 1114, 1283
TseFI GTSAC 1 cut(s) 730
TseI GCWGC 8 cut(s) 518, 521, 873, 1100, 1220, 1223, 1305, 1322
Tsp45I GTSAC 1 cut(s) 730
TspDTI ATGAA 7 cut(s) 161, 322, 439, 645, 716, 1248, 1347
TspGWI ACGGA 1 cut(s) 140
TspRI CASTG 5 cut(s) 292, 844, 1030, 1114, 1283
Van91I CCANNNNNTGG 1 cut(s) 1336
VpaK11BI GGWCC 1 cut(s) 1042
XagI CCTNNNNNAGG 1 cut(s) 552
XapI RAATTY 3 cut(s) 469, 493, 1070
XmiI GTMKAC 1 cut(s) 1017
XspI CTAG 3 cut(s) 135, 735, 1002
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.