DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G01210 AT1G01210 AT1G01210 AT4G07950 |
| fragaria_vesca | FvH4_7g17060 |
| malus_domestica | MD01G1085300.v1.1 |
| prunus_persica | Prupe.2G192900_v2.0.a1 Prupe.2G192900_v2.0.a1 Prupe.2G192900_v2.0.a1 Prupe.2G192900_v2.0.a1 |
| rosa_chinensis | RchiOBHm_Chr1g0360471 |
| rosa_laevigata | RLG00000027805 |
| rosa_roxburghii | Rroxscaffold_4G00296080 |
| rosa_rugosa | Rorug01G0278100 |
| rosa_samantha | Rh1AG291200 Rh1BG256200 Rh1CG273900 Rh1DG286000 |
| rosa_wichuraiana | Rw1G025790 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB7I | CCANNNNNTGG | 1 cut(s) | 212 |
| AcoI | YGGCCR | 1 cut(s) | 214 |
| AfaI | GTAC | 1 cut(s) | 230 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 20, 21, 212, 223 |
| AflIII | ACRYGT | 2 cut(s) | 17, 74 |
| AgsI | TTSAA | 2 cut(s) | 235, 292 |
| AluBI | AGCT | 2 cut(s) | 182, 197 |
| AluI | AGCT | 2 cut(s) | 182, 197 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 185 |
| AoxI | GGCC | 1 cut(s) | 214 |
| ApeKI | GCWGC | 1 cut(s) | 182 |
| AspLEI | GCGC | 1 cut(s) | 36 |
| BalI | TGGCCA | 1 cut(s) | 216 |
| BbvI | GCAGC | 1 cut(s) | 169 |
| BfmI | CTRYAG | 1 cut(s) | 144 |
| BisI | GCNGC | 1 cut(s) | 183 |
| BlsI | GCNGC | 1 cut(s) | 184 |
| BmsI | GCATC | 1 cut(s) | 275 |
| BsaJI | CCNNGG | 1 cut(s) | 206 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 181, 211 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 20, 21, 212, 223 |
| BseDI | CCNNGG | 1 cut(s) | 206 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 20, 21, 212, 223 |
| BseXI | GCAGC | 1 cut(s) | 169 |
| BshFI | GGCC | 1 cut(s) | 216 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 20, 21, 212, 223 |
| BsnI | GGCC | 1 cut(s) | 216 |
| BspANI | GGCC | 1 cut(s) | 216 |
| BssECI | CCNNGG | 1 cut(s) | 206 |
| BssT1I | CCWWGG | 1 cut(s) | 206 |
| BstHHI | GCGC | 1 cut(s) | 36 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 294 |
| BstNSI | RCATGY | 2 cut(s) | 21, 78 |
| BstSFI | CTRYAG | 1 cut(s) | 144 |
| BstV1I | GCAGC | 1 cut(s) | 169 |
| BsuRI | GGCC | 1 cut(s) | 216 |
| CaiI | CAGNNNCTG | 1 cut(s) | 185 |
| CfoI | GCGC | 1 cut(s) | 36 |
| Csp6I | GTAC | 1 cut(s) | 229 |
| CviAII | CATG | 3 cut(s) | 18, 75, 201 |
| CviJI | RGCY | 4 cut(s) | 182, 197, 216, 265 |
| CviKI_1 | RGCY | 4 cut(s) | 182, 197, 216, 265 |
| CviQI | GTAC | 1 cut(s) | 229 |
| EaeI | YGGCCR | 1 cut(s) | 214 |
| Eco130I | CCWWGG | 1 cut(s) | 206 |
| EcoT14I | CCWWGG | 1 cut(s) | 206 |
| ErhI | CCWWGG | 1 cut(s) | 206 |
| FaeI | CATG | 3 cut(s) | 21, 78, 204 |
| FaiI | YATR | 7 cut(s) | 19, 76, 82, 146, 173, 202, 282 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 215, 247 |
| FatI | CATG | 3 cut(s) | 17, 74, 200 |
| Fnu4HI | GCNGC | 1 cut(s) | 183 |
| Fsp4HI | GCNGC | 1 cut(s) | 183 |
| GlaI | GCGC | 1 cut(s) | 35 |
| GluI | GCNGC | 1 cut(s) | 183 |
| HaeIII | GGCC | 1 cut(s) | 216 |
| HhaI | GCGC | 1 cut(s) | 36 |
| Hin1II | CATG | 3 cut(s) | 21, 78, 204 |
| Hin6I | GCGC | 1 cut(s) | 34 |
| HinP1I | GCGC | 1 cut(s) | 34 |
| HinfI | GANTC | 4 cut(s) | 25, 60, 247, 269 |
| Hpy166II | GTNNAC | 1 cut(s) | 303 |
| Hpy188III | TCNNGA | 2 cut(s) | 57, 273 |
| Hpy8I | GTNNAC | 1 cut(s) | 303 |
| HpyCH4IV | ACGT | 1 cut(s) | 84 |
| HpyCH4V | TGCA | 1 cut(s) | 244 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 294 |
| HpySE526I | ACGT | 1 cut(s) | 84 |
| Hsp92II | CATG | 3 cut(s) | 21, 78, 204 |
| HspAI | GCGC | 1 cut(s) | 34 |
| LmnI | GCTCC | 1 cut(s) | 202 |
| LpnPI | CCDG | 3 cut(s) | 116, 165, 279 |
| Lsp1109I | GCAGC | 1 cut(s) | 169 |
| LweI | GCATC | 1 cut(s) | 275 |
| MaeII | ACGT | 1 cut(s) | 84 |
| MaeIII | GTNAC | 1 cut(s) | 157 |
| MboII | GAAGA | 2 cut(s) | 55, 130 |
| MlsI | TGGCCA | 1 cut(s) | 216 |
| MluNI | TGGCCA | 1 cut(s) | 216 |
| MnlI | CCTC | 3 cut(s) | 34, 38, 307 |
| Mox20I | TGGCCA | 1 cut(s) | 216 |
| MscI | TGGCCA | 1 cut(s) | 216 |
| MseI | TTAA | 1 cut(s) | 135 |
| Msp20I | TGGCCA | 1 cut(s) | 216 |
| MspA1I | CMGCKG | 1 cut(s) | 182 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 294 |
| NlaIII | CATG | 3 cut(s) | 21, 78, 204 |
| NspI | RCATGY | 2 cut(s) | 21, 78 |
| PciI | ACATGT | 2 cut(s) | 17, 74 |
| PfeI | GAWTC | 4 cut(s) | 25, 60, 247, 269 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 212 |
| PkrI | GCNGC | 1 cut(s) | 184 |
| PscI | ACATGT | 2 cut(s) | 17, 74 |
| PstNI | CAGNNNCTG | 1 cut(s) | 185 |
| PvuII | CAGCTG | 1 cut(s) | 182 |
| RsaI | GTAC | 1 cut(s) | 230 |
| RsaNI | GTAC | 1 cut(s) | 229 |
| SaqAI | TTAA | 1 cut(s) | 135 |
| SatI | GCNGC | 1 cut(s) | 183 |
| SetI | ASST | 6 cut(s) | 49, 87, 154, 184, 199, 212 |
| SfaNI | GCATC | 1 cut(s) | 275 |
| SfcI | CTRYAG | 1 cut(s) | 144 |
| StyI | CCWWGG | 1 cut(s) | 206 |
| TaiI | ACGT | 1 cut(s) | 87 |
| TaqI | TCGA | 2 cut(s) | 56, 96 |
| TfiI | GAWTC | 4 cut(s) | 25, 60, 247, 269 |
| Tru1I | TTAA | 1 cut(s) | 135 |
| Tru9I | TTAA | 1 cut(s) | 135 |
| TseI | GCWGC | 1 cut(s) | 182 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 212 |
| XceI | RCATGY | 2 cut(s) | 21, 78 |