Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0012267

Physical Location & Seq

Genomic Coordinates Reverse (-)

23172027 .. 23174514

Gene Structure 2488 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G192900.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 336 bp

ATGGAATTCTGCCCGAGTTGTGCAAATATGCTGCAGTATGAGCTGCCGAACATGCACGATGCAAGATTCTTCTGTCCAACTTGTCCTTATGTGGCATACGTCGATAGGAAGGTTAAGATCAAGAGAAGGCAACATTTAGTTAAAAAAGAGATCCAACCCATCTTTACCCTGGATGACTATAAGAATGCGCCCAAAATTGAAGAACCATGCCCAAGATGTGGATTTCCCGAGGCAGCTTACAGGACACAGCAAACGCGATCTGCTGATGAAGCAGAAACAAGATTTTTCAGGTGTATGAACAACAACTGTGGACACACGTGGGTTGATTACTCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00230 ko00240 ko01100 ko03020 ko04623 ko05169 map00230 map00240 map01100 map03020 map04623 map05169

Pfam Domains

Protein Families

Nudix_N_2 RNA_POL_M_15KD TFIIS_C

Protein Analysis

112

Amino Acids

13.15

Weight (kDa)

8.12

Isoelectric Point (pI)

51.25

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012267)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G01210 AT1G01210 AT1G01210 AT4G07950
fragaria_vesca	FvH4_7g17060
malus_domestica	MD01G1085300.v1.1
prunus_persica	Prupe.2G192900_v2.0.a1 Prupe.2G192900_v2.0.a1 Prupe.2G192900_v2.0.a1 Prupe.2G192900_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0360471
rosa_laevigata	RLG00000027805
rosa_roxburghii	Rroxscaffold_4G00296080
rosa_rugosa	Rorug01G0278100
rosa_samantha	Rh1AG291200 Rh1BG256200 Rh1CG273900 Rh1DG286000
rosa_wichuraiana	Rw1G025790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	218
AccII	CGCG	1 cut(s)	256
AclWI	GGATC	1 cut(s)	145
AcsI	RAATTY	1 cut(s)	5
AcvI	CACGTG	1 cut(s)	318
AfiI	CCNNNNNNNGG	1 cut(s)	218
AflIII	ACRYGT	1 cut(s)	315
AgsI	TTSAA	1 cut(s)	200
AjnI	CCWGG	1 cut(s)	168
AluBI	AGCT	2 cut(s)	43, 236
AluI	AGCT	2 cut(s)	43, 236
AlwI	GGATC	1 cut(s)	145
Ama87I	CYCGRG	2 cut(s)	13, 227
ApeKI	GCWGC	3 cut(s)	31, 43, 233
ApoI	RAATTY	1 cut(s)	5
AspLEI	GCGC	1 cut(s)	190
AvaI	CYCGRG	2 cut(s)	13, 227
BbrPI	CACGTG	1 cut(s)	318
BbvI	GCAGC	3 cut(s)	18, 30, 245
BccI	CCATC	1 cut(s)	167
BciT130I	CCWGG	1 cut(s)	170
BfmI	CTRYAG	1 cut(s)	32
BisI	GCNGC	3 cut(s)	32, 44, 234
BlsI	GCNGC	3 cut(s)	33, 45, 235
Bme1390I	CCNGG	1 cut(s)	170
BmeT110I	CYCGRG	2 cut(s)	13, 227
BmrFI	CCNGG	1 cut(s)	170
BmsI	GCATC	1 cut(s)	49
BsaAI	YACGTR	1 cut(s)	318
BsaJI	CCNNGG	2 cut(s)	168, 228
Bsc4I	CCNNNNNNNGG	1 cut(s)	218
BseBI	CCWGG	1 cut(s)	170
BseDI	CCNNGG	2 cut(s)	168, 228
BseGI	GGATG	1 cut(s)	178
BseLI	CCNNNNNNNGG	1 cut(s)	218
BseXI	GCAGC	3 cut(s)	18, 30, 245
Bsh1236I	CGCG	1 cut(s)	256
BsiHKCI	CYCGRG	2 cut(s)	13, 227
BslI	CCNNNNNNNGG	1 cut(s)	218
BsmI	GAATGC	1 cut(s)	190
BsoBI	CYCGRG	2 cut(s)	13, 227
Bsp143I	GATC	3 cut(s)	117, 150, 257
BspFNI	CGCG	1 cut(s)	256
BspMAI	CTGCAG	1 cut(s)	36
BspPI	GGATC	1 cut(s)	145
BssECI	CCNNGG	2 cut(s)	168, 228
BssMI	GATC	3 cut(s)	117, 150, 257
Bst2UI	CCWGG	1 cut(s)	170
Bst4CI	ACNGT	1 cut(s)	308
BstBAI	YACGTR	1 cut(s)	318
BstDEI	CTNAG	1 cut(s)	333
BstF5I	GGATG	1 cut(s)	178
BstFNI	CGCG	1 cut(s)	256
BstHHI	GCGC	1 cut(s)	190
BstKTI	GATC	3 cut(s)	120, 153, 260
BstMBI	GATC	3 cut(s)	117, 150, 257
BstMWI	GCNNNNNNNGC	3 cut(s)	40, 52, 269
BstNI	CCWGG	1 cut(s)	170
BstNSI	RCATGY	1 cut(s)	55
BstSCI	CCNGG	1 cut(s)	168
BstSFI	CTRYAG	1 cut(s)	32
BstUI	CGCG	1 cut(s)	256
BstV1I	GCAGC	3 cut(s)	18, 30, 245
BstX2I	RGATCY	1 cut(s)	150
BstYI	RGATCY	1 cut(s)	150
BtsCI	GGATG	1 cut(s)	178
CfoI	GCGC	1 cut(s)	190
CspCI	CAANNNNNGTGG	2 cut(s)	289, 324
CviAII	CATG	2 cut(s)	52, 207
CviJI	RGCY	2 cut(s)	43, 236
CviKI_1	RGCY	2 cut(s)	43, 236
DdeI	CTNAG	1 cut(s)	333
DpnI	GATC	3 cut(s)	119, 152, 259
DpnII	GATC	3 cut(s)	117, 150, 257
Eco72I	CACGTG	1 cut(s)	318
Eco88I	CYCGRG	2 cut(s)	13, 227
EcoRI	GAATTC	1 cut(s)	5
EcoRII	CCWGG	1 cut(s)	168
FaeI	CATG	2 cut(s)	55, 210
FaiI	YATR	8 cut(s)	29, 39, 53, 90, 97, 180, 208, 296
FatI	CATG	2 cut(s)	51, 206
Fnu4HI	GCNGC	3 cut(s)	32, 44, 234
FokI	GGATG	1 cut(s)	185
Fsp4HI	GCNGC	3 cut(s)	32, 44, 234
GlaI	GCGC	1 cut(s)	189
GluI	GCNGC	3 cut(s)	32, 44, 234
HhaI	GCGC	1 cut(s)	190
Hin1II	CATG	2 cut(s)	55, 210
Hin6I	GCGC	1 cut(s)	188
HinP1I	GCGC	1 cut(s)	188
HinfI	GANTC	1 cut(s)	66
Hpy166II	GTNNAC	1 cut(s)	311
Hpy188III	TCNNGA	2 cut(s)	121, 227
Hpy8I	GTNNAC	1 cut(s)	311
Hpy99I	CGWCG	1 cut(s)	104
HpyAV	CCTTC	2 cut(s)	103, 120
HpyCH4III	ACNGT	1 cut(s)	308
HpyCH4IV	ACGT	2 cut(s)	99, 317
HpyCH4V	TGCA	4 cut(s)	23, 34, 55, 62
HpyF10VI	GCNNNNNNNGC	3 cut(s)	40, 52, 269
HpyF3I	CTNAG	1 cut(s)	333
HpySE526I	ACGT	2 cut(s)	99, 317
Hsp92II	CATG	2 cut(s)	55, 210
HspAI	GCGC	1 cut(s)	188
Kzo9I	GATC	3 cut(s)	117, 150, 257
LpnPI	CCDG	4 cut(s)	155, 182, 226, 274
Lsp1109I	GCAGC	3 cut(s)	18, 30, 245
LweI	GCATC	1 cut(s)	49
MaeII	ACGT	2 cut(s)	99, 317
MalI	GATC	3 cut(s)	119, 152, 259
MboI	GATC	3 cut(s)	117, 150, 257
MboII	GAAGA	2 cut(s)	61, 212
MflI	RGATCY	1 cut(s)	150
MluCI	AATT	2 cut(s)	5, 195
MmeI	TCCRAC	2 cut(s)	101, 178
MnlI	CCTC	1 cut(s)	223
MseI	TTAA	2 cut(s)	114, 141
MspR9I	CCNGG	1 cut(s)	170
Mva1269I	GAATGC	1 cut(s)	190
MvaI	CCWGG	1 cut(s)	170
MvnI	CGCG	1 cut(s)	256
MwoI	GCNNNNNNNGC	3 cut(s)	40, 52, 269
NdeII	GATC	3 cut(s)	117, 150, 257
NlaIII	CATG	2 cut(s)	55, 210
NspI	RCATGY	1 cut(s)	55
PctI	GAATGC	1 cut(s)	190
PfeI	GAWTC	1 cut(s)	66
PflMI	CCANNNNNTGG	1 cut(s)	218
PkrI	GCNGC	3 cut(s)	33, 45, 235
PmaCI	CACGTG	1 cut(s)	318
PmlI	CACGTG	1 cut(s)	318
Ppu21I	YACGTR	1 cut(s)	318
Psp6I	CCWGG	1 cut(s)	168
PspCI	CACGTG	1 cut(s)	318
PspGI	CCWGG	1 cut(s)	168
PstI	CTGCAG	1 cut(s)	36
PsuI	RGATCY	1 cut(s)	150
SaqAI	TTAA	2 cut(s)	114, 141
SatI	GCNGC	3 cut(s)	32, 44, 234
Sau3AI	GATC	3 cut(s)	117, 150, 257
ScrFI	CCNGG	1 cut(s)	170
SetI	ASST	6 cut(s)	45, 102, 114, 238, 293, 320
SfaNI	GCATC	1 cut(s)	49
SfcI	CTRYAG	1 cut(s)	32
Sse9I	AATT	2 cut(s)	5, 195
StyD4I	CCNGG	1 cut(s)	168
TaaI	ACNGT	1 cut(s)	308
TaiI	ACGT	2 cut(s)	102, 320
TaqI	TCGA	1 cut(s)	102
TasI	AATT	2 cut(s)	5, 195
TfiI	GAWTC	1 cut(s)	66
Tru1I	TTAA	2 cut(s)	114, 141
Tru9I	TTAA	2 cut(s)	114, 141
TseI	GCWGC	3 cut(s)	31, 43, 233
TspDTI	ATGAA	2 cut(s)	282, 311
Van91I	CCANNNNNTGG	1 cut(s)	218
XapI	RAATTY	1 cut(s)	5
XceI	RCATGY	1 cut(s)	55
XcmI	CCANNNNNNNNNTGG	1 cut(s)	166

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.