DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G01210 AT1G01210 AT1G01210 AT4G07950 |
| fragaria_vesca | FvH4_7g17060 |
| malus_domestica | MD01G1085300.v1.1 |
| prunus_persica | Prupe.2G192900_v2.0.a1 Prupe.2G192900_v2.0.a1 Prupe.2G192900_v2.0.a1 Prupe.2G192900_v2.0.a1 |
| rosa_chinensis | RchiOBHm_Chr1g0360471 |
| rosa_laevigata | RLG00000027805 |
| rosa_roxburghii | Rroxscaffold_4G00296080 |
| rosa_rugosa | Rorug01G0278100 |
| rosa_samantha | Rh1AG291200 Rh1BG256200 Rh1CG273900 Rh1DG286000 |
| rosa_wichuraiana | Rw1G025790 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB7I | CCANNNNNTGG | 2 cut(s) | 182, 380 |
| AclWI | GGATC | 2 cut(s) | 307, 491 |
| AcsI | RAATTY | 5 cut(s) | 7, 99, 110, 167, 443 |
| AcuI | CTGAAG | 1 cut(s) | 381 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 182, 380 |
| AgsI | TTSAA | 1 cut(s) | 460 |
| AluBI | AGCT | 1 cut(s) | 205 |
| AluI | AGCT | 1 cut(s) | 205 |
| Alw26I | GTCTC | 1 cut(s) | 58 |
| AlwI | GGATC | 2 cut(s) | 307, 491 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 67 |
| ApeKI | GCWGC | 2 cut(s) | 221, 395 |
| ApoI | RAATTY | 5 cut(s) | 7, 99, 110, 167, 443 |
| AsuC2I | CCSGG | 1 cut(s) | 404 |
| AsuHPI | GGTGA | 1 cut(s) | 287 |
| BbsI | GAAGAC | 1 cut(s) | 471 |
| BbvI | GCAGC | 2 cut(s) | 208, 382 |
| BcnI | CCSGG | 1 cut(s) | 404 |
| BcoDI | GTCTC | 1 cut(s) | 58 |
| BfaI | CTAG | 2 cut(s) | 225, 299 |
| BfmI | CTRYAG | 1 cut(s) | 194 |
| BisI | GCNGC | 2 cut(s) | 222, 396 |
| BlsI | GCNGC | 2 cut(s) | 223, 397 |
| Bme1390I | CCNGG | 1 cut(s) | 404 |
| BmrFI | CCNGG | 1 cut(s) | 404 |
| BmsI | GCATC | 1 cut(s) | 443 |
| BpiI | GAAGAC | 1 cut(s) | 471 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 280, 312 |
| BpuMI | CCSGG | 1 cut(s) | 404 |
| Bsa29I | ATCGAT | 1 cut(s) | 486 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 124, 154 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 182, 380 |
| BseCI | ATCGAT | 1 cut(s) | 486 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 182, 380 |
| BseMII | CTCAG | 1 cut(s) | 59 |
| BseRI | GAGGAG | 1 cut(s) | 301 |
| BseXI | GCAGC | 2 cut(s) | 208, 382 |
| BshVI | ATCGAT | 1 cut(s) | 486 |
| BsiSI | CCGG | 1 cut(s) | 403 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 182, 380 |
| BsmAI | GTCTC | 1 cut(s) | 58 |
| Bsp143I | GATC | 3 cut(s) | 312, 419, 483 |
| BspCNI | CTCAG | 1 cut(s) | 60 |
| BspDI | ATCGAT | 1 cut(s) | 486 |
| BspPI | GGATC | 2 cut(s) | 307, 491 |
| BssMI | GATC | 3 cut(s) | 312, 419, 483 |
| Bst4CI | ACNGT | 4 cut(s) | 32, 59, 198, 470 |
| BstC8I | GCNNGC | 3 cut(s) | 191, 219, 477 |
| BstDEI | CTNAG | 2 cut(s) | 68, 495 |
| BstKTI | GATC | 3 cut(s) | 315, 422, 486 |
| BstMAI | GTCTC | 1 cut(s) | 58 |
| BstMBI | GATC | 3 cut(s) | 312, 419, 483 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 431 |
| BstNSI | RCATGY | 4 cut(s) | 193, 221, 372, 479 |
| BstSCI | CCNGG | 1 cut(s) | 402 |
| BstSFI | CTRYAG | 1 cut(s) | 194 |
| BstV1I | GCAGC | 2 cut(s) | 208, 382 |
| BstV2I | GAAGAC | 1 cut(s) | 471 |
| BstX2I | RGATCY | 1 cut(s) | 312 |
| BstYI | RGATCY | 1 cut(s) | 312 |
| Bsu15I | ATCGAT | 1 cut(s) | 486 |
| BsuTUI | ATCGAT | 1 cut(s) | 486 |
| Cac8I | GCNNGC | 3 cut(s) | 191, 219, 477 |
| CaiI | CAGNNNCTG | 1 cut(s) | 67 |
| ClaI | ATCGAT | 1 cut(s) | 486 |
| CviAII | CATG | 5 cut(s) | 190, 218, 262, 369, 476 |
| CviJI | RGCY | 3 cut(s) | 205, 296, 395 |
| CviKI_1 | RGCY | 3 cut(s) | 205, 296, 395 |
| DdeI | CTNAG | 2 cut(s) | 68, 495 |
| DpnI | GATC | 3 cut(s) | 314, 421, 485 |
| DpnII | GATC | 3 cut(s) | 312, 419, 483 |
| Eco57I | CTGAAG | 1 cut(s) | 381 |
| EcoRI | GAATTC | 2 cut(s) | 110, 167 |
| EcoT22I | ATGCAT | 1 cut(s) | 219 |
| FaeI | CATG | 5 cut(s) | 193, 221, 265, 372, 479 |
| FatI | CATG | 5 cut(s) | 189, 217, 261, 368, 475 |
| Fnu4HI | GCNGC | 2 cut(s) | 222, 396 |
| Fsp4HI | GCNGC | 2 cut(s) | 222, 396 |
| FspBI | CTAG | 2 cut(s) | 225, 299 |
| GluI | GCNGC | 2 cut(s) | 222, 396 |
| HapII | CCGG | 1 cut(s) | 403 |
| Hin1II | CATG | 5 cut(s) | 193, 221, 265, 372, 479 |
| HinfI | GANTC | 1 cut(s) | 228 |
| HpaII | CCGG | 1 cut(s) | 403 |
| HphI | GGTGA | 1 cut(s) | 287 |
| Hpy188I | TCNGA | 3 cut(s) | 47, 63, 210 |
| HpyAV | CCTTC | 1 cut(s) | 301 |
| HpyCH4III | ACNGT | 4 cut(s) | 32, 59, 198, 470 |
| HpyCH4V | TGCA | 2 cut(s) | 217, 350 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 431 |
| HpyF3I | CTNAG | 2 cut(s) | 68, 495 |
| Hsp92II | CATG | 5 cut(s) | 193, 221, 265, 372, 479 |
| Kzo9I | GATC | 3 cut(s) | 312, 419, 483 |
| LpnPI | CCDG | 4 cut(s) | 106, 189, 344, 416 |
| Lsp1109I | GCAGC | 2 cut(s) | 208, 382 |
| LweI | GCATC | 1 cut(s) | 443 |
| MaeI | CTAG | 2 cut(s) | 225, 299 |
| MalI | GATC | 3 cut(s) | 314, 421, 485 |
| MboI | GATC | 3 cut(s) | 312, 419, 483 |
| MboII | GAAGA | 3 cut(s) | 223, 374, 476 |
| MflI | RGATCY | 1 cut(s) | 312 |
| MluCI | AATT | 7 cut(s) | 7, 99, 110, 167, 279, 324, 443 |
| MmeI | TCCRAC | 2 cut(s) | 263, 340 |
| MnlI | CCTC | 7 cut(s) | 125, 126, 179, 279, 282, 286, 385 |
| Mph1103I | ATGCAT | 1 cut(s) | 219 |
| MseI | TTAA | 3 cut(s) | 81, 303, 327 |
| MspI | CCGG | 1 cut(s) | 403 |
| MspR9I | CCNGG | 1 cut(s) | 404 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 431 |
| NciI | CCSGG | 1 cut(s) | 404 |
| NdeII | GATC | 3 cut(s) | 312, 419, 483 |
| NlaIII | CATG | 5 cut(s) | 193, 221, 265, 372, 479 |
| NsiI | ATGCAT | 1 cut(s) | 219 |
| NspI | RCATGY | 4 cut(s) | 193, 221, 372, 479 |
| PaeI | GCATGC | 3 cut(s) | 193, 221, 479 |
| PfeI | GAWTC | 1 cut(s) | 228 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 182, 380 |
| PfoI | TCCNGGA | 1 cut(s) | 402 |
| PkrI | GCNGC | 2 cut(s) | 223, 397 |
| PstNI | CAGNNNCTG | 1 cut(s) | 67 |
| PsuI | RGATCY | 1 cut(s) | 312 |
| SaqAI | TTAA | 3 cut(s) | 81, 303, 327 |
| SatI | GCNGC | 2 cut(s) | 222, 396 |
| Sau3AI | GATC | 3 cut(s) | 312, 419, 483 |
| ScrFI | CCNGG | 1 cut(s) | 404 |
| SetI | ASST | 3 cut(s) | 207, 333, 455 |
| SfaNI | GCATC | 1 cut(s) | 443 |
| SfcI | CTRYAG | 1 cut(s) | 194 |
| SphI | GCATGC | 3 cut(s) | 193, 221, 479 |
| Sse9I | AATT | 7 cut(s) | 7, 99, 110, 167, 279, 324, 443 |
| SspMI | CTAG | 2 cut(s) | 225, 299 |
| StyD4I | CCNGG | 1 cut(s) | 402 |
| TaaI | ACNGT | 4 cut(s) | 32, 59, 198, 470 |
| TaqI | TCGA | 3 cut(s) | 103, 125, 486 |
| TasI | AATT | 7 cut(s) | 7, 99, 110, 167, 279, 324, 443 |
| TfiI | GAWTC | 1 cut(s) | 228 |
| Tru1I | TTAA | 3 cut(s) | 81, 303, 327 |
| Tru9I | TTAA | 3 cut(s) | 81, 303, 327 |
| TseI | GCWGC | 2 cut(s) | 221, 395 |
| TspDTI | ATGAA | 2 cut(s) | 17, 444 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 182, 380 |
| XapI | RAATTY | 5 cut(s) | 7, 99, 110, 167, 443 |
| XceI | RCATGY | 4 cut(s) | 193, 221, 372, 479 |
| XspI | CTAG | 2 cut(s) | 225, 299 |
| Zsp2I | ATGCAT | 1 cut(s) | 219 |