Rh1AG291200

DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
OG0012267
Physical Location & Seq
Reverse (-)
52117191 .. 52132276
15086 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG291200.1

Sequence Viewer

Length: 264 bp
ATGACAGGGAGGGAGAGTTGTGTTGGGAGATTTTCGCAAATGGAATTCTGCCCGGATTGTGGAGGCATGCTGCAGTATGAGCTTCCGAATATGCACGCCGCTAGATTCTTCTGTCCAACTTGTCCTTATGTAGCATACATGGAGAAACGGGATTTGCTGGTAAATGGTAAGAAAAGGAAGAAACATTATATTTTGGAACAAATGCTTCTGTACAAAGGAGAAAGCCCAGGTGAGGATACAATGGATGAGGGTCGGTTAGAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00230 ko00240 ko01100 ko03020 ko04623 ko05169 map00230 map00240 map01100 map03020 map04623 map05169
Pfam Domains
Protein Families
Nudix_N_2 RNA_POL_M_15KD TFIIS_C

Protein Analysis

87

Amino Acids

10.11

Weight (kDa)

6.11

Isoelectric Point (pI)

57.28

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Zn_ribbon_Nudix PF14803 16 - 46 3e-06 Nudix N-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 99
AcsI RAATTY 1 cut(s) 44
AfaI GTAC 1 cut(s) 212
AfiI CCNNNNNNNGG 2 cut(s) 59, 232
AjnI CCWGG 1 cut(s) 226
AluBI AGCT 1 cut(s) 82
AluI AGCT 1 cut(s) 82
ApeKI GCWGC 1 cut(s) 70
ApoI RAATTY 1 cut(s) 44
AsuC2I CCSGG 1 cut(s) 53
AsuHPI GGTGA 1 cut(s) 242
BbvI GCAGC 1 cut(s) 57
BciT130I CCWGG 1 cut(s) 228
BciVI GTATCC 1 cut(s) 229
BcnI CCSGG 1 cut(s) 53
BfaI CTAG 1 cut(s) 102
BfmI CTRYAG 1 cut(s) 71
BfuI GTATCC 1 cut(s) 229
BisI GCNGC 2 cut(s) 71, 99
BlsI GCNGC 2 cut(s) 72, 100
Bme1390I CCNGG 2 cut(s) 53, 228
BmrFI CCNGG 2 cut(s) 53, 228
BpuMI CCSGG 1 cut(s) 53
BsaJI CCNNGG 1 cut(s) 226
BsaXI ACNNNNNCTCC 1 cut(s) 31
Bsc4I CCNNNNNNNGG 2 cut(s) 59, 232
BseBI CCWGG 1 cut(s) 228
BseDI CCNNGG 1 cut(s) 226
BseGI GGATG 1 cut(s) 250
BseLI CCNNNNNNNGG 2 cut(s) 59, 232
BseXI GCAGC 1 cut(s) 57
BsiSI CCGG 1 cut(s) 53
BslI CCNNNNNNNGG 2 cut(s) 59, 232
Bsp1407I TGTACA 1 cut(s) 210
BspACI CCGC 1 cut(s) 99
BspMAI CTGCAG 1 cut(s) 75
BsrGI TGTACA 1 cut(s) 210
BssECI CCNNGG 1 cut(s) 226
Bst2UI CCWGG 1 cut(s) 228
BstAUI TGTACA 1 cut(s) 210
BstC8I GCNNGC 2 cut(s) 68, 96
BstF5I GGATG 1 cut(s) 250
BstMWI GCNNNNNNNGC 1 cut(s) 79
BstNI CCWGG 1 cut(s) 228
BstNSI RCATGY 1 cut(s) 70
BstSCI CCNGG 2 cut(s) 51, 226
BstSFI CTRYAG 1 cut(s) 71
BstV1I GCAGC 1 cut(s) 57
BsuI GTATCC 1 cut(s) 229
BtsCI GGATG 1 cut(s) 250
Cac8I GCNNGC 2 cut(s) 68, 96
Csp6I GTAC 1 cut(s) 211
CviAII CATG 2 cut(s) 67, 139
CviJI RGCY 2 cut(s) 82, 225
CviKI_1 RGCY 2 cut(s) 82, 225
CviQI GTAC 1 cut(s) 211
EcoRI GAATTC 1 cut(s) 44
EcoRII CCWGG 1 cut(s) 226
FaeI CATG 2 cut(s) 70, 142
FaiI YATR 7 cut(s) 68, 78, 92, 129, 136, 140, 189
FatI CATG 2 cut(s) 66, 138
Fnu4HI GCNGC 2 cut(s) 71, 99
FokI GGATG 1 cut(s) 257
Fsp4HI GCNGC 2 cut(s) 71, 99
FspBI CTAG 1 cut(s) 102
GluI GCNGC 2 cut(s) 71, 99
HapII CCGG 1 cut(s) 53
Hin1II CATG 2 cut(s) 70, 142
HinfI GANTC 1 cut(s) 105
HpaII CCGG 1 cut(s) 53
HphI GGTGA 1 cut(s) 242
Hpy188I TCNGA 1 cut(s) 87
HpyCH4V TGCA 2 cut(s) 73, 94
HpyF10VI GCNNNNNNNGC 1 cut(s) 79
Hsp92II CATG 2 cut(s) 70, 142
LpnPI CCDG 4 cut(s) 66, 143, 213, 240
Lsp1109I GCAGC 1 cut(s) 57
MaeI CTAG 1 cut(s) 102
MboII GAAGA 2 cut(s) 100, 190
MluCI AATT 1 cut(s) 44
MmeI TCCRAC 1 cut(s) 140
MnlI CCTC 4 cut(s) 3, 56, 226, 241
MspI CCGG 1 cut(s) 53
MspR9I CCNGG 2 cut(s) 53, 228
MvaI CCWGG 1 cut(s) 228
MwoI GCNNNNNNNGC 1 cut(s) 79
NciI CCSGG 1 cut(s) 53
NlaIII CATG 2 cut(s) 70, 142
NspI RCATGY 1 cut(s) 70
PaeI GCATGC 1 cut(s) 70
PfeI GAWTC 1 cut(s) 105
PkrI GCNGC 2 cut(s) 72, 100
Psp6I CCWGG 1 cut(s) 226
PspGI CCWGG 1 cut(s) 226
PstI CTGCAG 1 cut(s) 75
RsaI GTAC 1 cut(s) 212
RsaNI GTAC 1 cut(s) 211
SatI GCNGC 2 cut(s) 71, 99
ScrFI CCNGG 2 cut(s) 53, 228
SetI ASST 2 cut(s) 84, 232
SfcI CTRYAG 1 cut(s) 71
SphI GCATGC 1 cut(s) 70
Sse9I AATT 1 cut(s) 44
SsiI CCGC 1 cut(s) 99
SspMI CTAG 1 cut(s) 102
StyD4I CCNGG 2 cut(s) 51, 226
TasI AATT 1 cut(s) 44
TatI WGTACW 1 cut(s) 210
TauI GCSGC 1 cut(s) 101
TfiI GAWTC 1 cut(s) 105
TseI GCWGC 1 cut(s) 70
XapI RAATTY 1 cut(s) 44
XceI RCATGY 1 cut(s) 70
XspI CTAG 1 cut(s) 102
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.