DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G01210 AT1G01210 AT1G01210 AT4G07950 |
| fragaria_vesca | FvH4_7g17060 |
| malus_domestica | MD01G1085300.v1.1 |
| prunus_persica | Prupe.2G192900_v2.0.a1 Prupe.2G192900_v2.0.a1 Prupe.2G192900_v2.0.a1 Prupe.2G192900_v2.0.a1 |
| rosa_chinensis | RchiOBHm_Chr1g0360471 |
| rosa_laevigata | RLG00000027805 |
| rosa_roxburghii | Rroxscaffold_4G00296080 |
| rosa_rugosa | Rorug01G0278100 |
| rosa_samantha | Rh1AG291200 Rh1BG256200 Rh1CG273900 Rh1DG286000 |
| rosa_wichuraiana | Rw1G025790 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB7I | CCANNNNNTGG | 1 cut(s) | 284 |
| AclWI | GGATC | 2 cut(s) | 211, 395 |
| AcsI | RAATTY | 2 cut(s) | 71, 347 |
| AcuI | CTGAAG | 1 cut(s) | 285 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 86, 284 |
| AgsI | TTSAA | 2 cut(s) | 238, 364 |
| AluBI | AGCT | 1 cut(s) | 109 |
| AluI | AGCT | 1 cut(s) | 109 |
| AlwI | GGATC | 2 cut(s) | 211, 395 |
| ApeKI | GCWGC | 3 cut(s) | 97, 125, 299 |
| ApoI | RAATTY | 2 cut(s) | 71, 347 |
| AsuC2I | CCSGG | 2 cut(s) | 80, 308 |
| AsuHPI | GGTGA | 1 cut(s) | 191 |
| BbsI | GAAGAC | 1 cut(s) | 375 |
| BbvI | GCAGC | 3 cut(s) | 84, 112, 286 |
| BcnI | CCSGG | 2 cut(s) | 80, 308 |
| BfaI | CTAG | 2 cut(s) | 129, 203 |
| BfmI | CTRYAG | 1 cut(s) | 98 |
| BisI | GCNGC | 3 cut(s) | 98, 126, 300 |
| BlsI | GCNGC | 3 cut(s) | 99, 127, 301 |
| Bme1390I | CCNGG | 2 cut(s) | 80, 308 |
| BmrFI | CCNGG | 2 cut(s) | 80, 308 |
| BmsI | GCATC | 2 cut(s) | 14, 347 |
| BpiI | GAAGAC | 1 cut(s) | 375 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 184, 216 |
| BpuMI | CCSGG | 2 cut(s) | 80, 308 |
| Bsa29I | ATCGAT | 1 cut(s) | 390 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 28, 58 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 86, 284 |
| BseCI | ATCGAT | 1 cut(s) | 390 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 86, 284 |
| BseRI | GAGGAG | 1 cut(s) | 205 |
| BseXI | GCAGC | 3 cut(s) | 84, 112, 286 |
| BshVI | ATCGAT | 1 cut(s) | 390 |
| BsiSI | CCGG | 2 cut(s) | 80, 307 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 86, 284 |
| Bsp143I | GATC | 3 cut(s) | 216, 323, 387 |
| BspDI | ATCGAT | 1 cut(s) | 390 |
| BspMAI | CTGCAG | 1 cut(s) | 102 |
| BspPI | GGATC | 2 cut(s) | 211, 395 |
| BssMI | GATC | 3 cut(s) | 216, 323, 387 |
| Bst4CI | ACNGT | 1 cut(s) | 374 |
| BstC8I | GCNNGC | 3 cut(s) | 95, 123, 198 |
| BstDEI | CTNAG | 1 cut(s) | 399 |
| BstKTI | GATC | 3 cut(s) | 219, 326, 390 |
| BstMBI | GATC | 3 cut(s) | 216, 323, 387 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 106, 335 |
| BstNSI | RCATGY | 3 cut(s) | 97, 276, 383 |
| BstSCI | CCNGG | 2 cut(s) | 78, 306 |
| BstSFI | CTRYAG | 1 cut(s) | 98 |
| BstV1I | GCAGC | 3 cut(s) | 84, 112, 286 |
| BstV2I | GAAGAC | 1 cut(s) | 375 |
| BstX2I | RGATCY | 1 cut(s) | 216 |
| BstYI | RGATCY | 1 cut(s) | 216 |
| Bsu15I | ATCGAT | 1 cut(s) | 390 |
| BsuTUI | ATCGAT | 1 cut(s) | 390 |
| Cac8I | GCNNGC | 3 cut(s) | 95, 123, 198 |
| ClaI | ATCGAT | 1 cut(s) | 390 |
| CviAII | CATG | 4 cut(s) | 94, 166, 273, 380 |
| CviJI | RGCY | 3 cut(s) | 109, 200, 299 |
| CviKI_1 | RGCY | 3 cut(s) | 109, 200, 299 |
| DdeI | CTNAG | 1 cut(s) | 399 |
| DpnI | GATC | 3 cut(s) | 218, 325, 389 |
| DpnII | GATC | 3 cut(s) | 216, 323, 387 |
| Eco57I | CTGAAG | 1 cut(s) | 285 |
| EcoRI | GAATTC | 1 cut(s) | 71 |
| FaeI | CATG | 4 cut(s) | 97, 169, 276, 383 |
| FatI | CATG | 4 cut(s) | 93, 165, 272, 379 |
| Fnu4HI | GCNGC | 3 cut(s) | 98, 126, 300 |
| Fsp4HI | GCNGC | 3 cut(s) | 98, 126, 300 |
| FspBI | CTAG | 2 cut(s) | 129, 203 |
| GluI | GCNGC | 3 cut(s) | 98, 126, 300 |
| HapII | CCGG | 2 cut(s) | 80, 307 |
| Hin1II | CATG | 4 cut(s) | 97, 169, 276, 383 |
| HinfI | GANTC | 2 cut(s) | 13, 132 |
| HpaII | CCGG | 2 cut(s) | 80, 307 |
| HphI | GGTGA | 1 cut(s) | 191 |
| Hpy166II | GTNNAC | 1 cut(s) | 377 |
| Hpy188I | TCNGA | 2 cut(s) | 12, 114 |
| Hpy8I | GTNNAC | 1 cut(s) | 377 |
| HpyAV | CCTTC | 1 cut(s) | 205 |
| HpyCH4III | ACNGT | 1 cut(s) | 374 |
| HpyCH4V | TGCA | 4 cut(s) | 32, 100, 121, 254 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 106, 335 |
| HpyF3I | CTNAG | 1 cut(s) | 399 |
| Hsp92II | CATG | 4 cut(s) | 97, 169, 276, 383 |
| Kzo9I | GATC | 3 cut(s) | 216, 323, 387 |
| LpnPI | CCDG | 5 cut(s) | 18, 93, 161, 182, 320 |
| Lsp1109I | GCAGC | 3 cut(s) | 84, 112, 286 |
| LweI | GCATC | 2 cut(s) | 14, 347 |
| MaeI | CTAG | 2 cut(s) | 129, 203 |
| MalI | GATC | 3 cut(s) | 218, 325, 389 |
| MboI | GATC | 3 cut(s) | 216, 323, 387 |
| MboII | GAAGA | 3 cut(s) | 127, 278, 380 |
| MflI | RGATCY | 1 cut(s) | 216 |
| MluCI | AATT | 4 cut(s) | 71, 183, 228, 347 |
| MmeI | TCCRAC | 2 cut(s) | 167, 244 |
| MnlI | CCTC | 5 cut(s) | 30, 83, 183, 186, 289 |
| MseI | TTAA | 2 cut(s) | 207, 231 |
| MspI | CCGG | 2 cut(s) | 80, 307 |
| MspR9I | CCNGG | 2 cut(s) | 80, 308 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 106, 335 |
| NciI | CCSGG | 2 cut(s) | 80, 308 |
| NdeII | GATC | 3 cut(s) | 216, 323, 387 |
| NlaIII | CATG | 4 cut(s) | 97, 169, 276, 383 |
| NspI | RCATGY | 3 cut(s) | 97, 276, 383 |
| PaeI | GCATGC | 1 cut(s) | 97 |
| PfeI | GAWTC | 2 cut(s) | 13, 132 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 284 |
| PfoI | TCCNGGA | 1 cut(s) | 306 |
| PkrI | GCNGC | 3 cut(s) | 99, 127, 301 |
| PstI | CTGCAG | 1 cut(s) | 102 |
| PsuI | RGATCY | 1 cut(s) | 216 |
| SaqAI | TTAA | 2 cut(s) | 207, 231 |
| SatI | GCNGC | 3 cut(s) | 98, 126, 300 |
| Sau3AI | GATC | 3 cut(s) | 216, 323, 387 |
| ScrFI | CCNGG | 2 cut(s) | 80, 308 |
| SetI | ASST | 2 cut(s) | 111, 359 |
| SfaNI | GCATC | 2 cut(s) | 14, 347 |
| SfcI | CTRYAG | 1 cut(s) | 98 |
| SphI | GCATGC | 1 cut(s) | 97 |
| Sse9I | AATT | 4 cut(s) | 71, 183, 228, 347 |
| SspMI | CTAG | 2 cut(s) | 129, 203 |
| StyD4I | CCNGG | 2 cut(s) | 78, 306 |
| TaaI | ACNGT | 1 cut(s) | 374 |
| TaqI | TCGA | 1 cut(s) | 390 |
| TasI | AATT | 4 cut(s) | 71, 183, 228, 347 |
| TfiI | GAWTC | 2 cut(s) | 13, 132 |
| Tru1I | TTAA | 2 cut(s) | 207, 231 |
| Tru9I | TTAA | 2 cut(s) | 207, 231 |
| TseI | GCWGC | 3 cut(s) | 97, 125, 299 |
| TspDTI | ATGAA | 1 cut(s) | 348 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 284 |
| XapI | RAATTY | 2 cut(s) | 71, 347 |
| XceI | RCATGY | 3 cut(s) | 97, 276, 383 |
| XspI | CTAG | 2 cut(s) | 129, 203 |