AT4G08330

protein At4g08330, chloroplastic-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0011319
Physical Location & Seq
Reverse (-)
5255120 .. 5256778
1659 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G08330.2

Sequence Viewer

Length: 495 bp
ATGGAGAGATCAGCGTCGGTGGGTGTTAACGACGGCCGTTTTGGTGGCAACCAATTCTATTCGCCATCTTTCTCTTCTTCTTCTTCTTCTTCTTCCATGAGACATGTTAATTACAGTTGTGGATCTTGTGGGTATGAACTAAACCTGAGCTCCACGAATCGAATCACATCGACAATCGGATCAAAGTACGGTAAATCCATGAAGAGTGGGATCATATCTTTCTTCAACATCGACGAGGGAAGATTCAGTCAGGTCGATGAGTTCCAATGCATGCCTCACTTCTCTAGATACTCTTGGGGTTTGTTTCGACACAGAACGAAGCTTCTATGTCGCAAATGTAATAATTATATCGGCAATGCTTCTCAGGAGAAGGCTCCTGAGTATGCACTTGTTACACAAAACTCGGATCCGACATCGCCTAGGATTGGTAGTGTTACGAAGTACGATATCAGAATCCGCTCGCTTCAACCTTCTTCTGCGGTCGCTTTGCTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

164

Amino Acids

18.21

Weight (kDa)

9.45

Isoelectric Point (pI)

50.55

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
At4g08330 PF24046 35 - 147 2.3e-40 At4g08330 beta-tent
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011319)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G08330 AT4G08330
fragaria_vesca FvH4_2g26960 FvH4_2g26960
malus_domestica MD08G1162700.v1.1 MD15G1348300.v1.1
prunus_persica Prupe.1G497200_v2.0.a1 Prupe.1G497200_v2.0.a1
pyrus_communis pycom08g14060 pycom15g31200
rosa_chinensis RchiOBHm_Chr6g0295821
rosa_laevigata RLG00000011765
rosa_multiflora Rmu_ssc0000086.1_g000001
rosa_roxburghii Rroxscaffold_7G00172150
rosa_rugosa Rorug06G0254100
rosa_samantha Rh6AG368100 Rh6BG375700 Rh6CG382000 Rh6DG368500
rosa_wichuraiana Rw6G032090

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 459
AciI CCGC 2 cut(s) 457, 479
AclWI GGATC 5 cut(s) 130, 187, 218, 401, 414
AcoI YGGCCR 1 cut(s) 34
AfaI GTAC 2 cut(s) 188, 443
AfiI CCNNNNNNNGG 1 cut(s) 425
AflIII ACRYGT 1 cut(s) 103
AgsI TTSAA 2 cut(s) 226, 467
AluBI AGCT 2 cut(s) 150, 322
AluI AGCT 2 cut(s) 150, 322
Alw21I GWGCWC 1 cut(s) 152
Alw26I GTCTC 1 cut(s) 94
AlwI GGATC 5 cut(s) 130, 187, 218, 401, 414
AoxI GGCC 1 cut(s) 34
ArsI GACNNNNNNTTYG 2 cut(s) 23, 55
AspA2I CCTAGG 1 cut(s) 419
AvrII CCTAGG 1 cut(s) 419
BamHI GGATCC 1 cut(s) 406
BanII GRGCYC 1 cut(s) 152
Bbv12I GWGCWC 1 cut(s) 152
BccI CCATC 1 cut(s) 73
BceAI ACGGC 2 cut(s) 21, 49
BcoDI GTCTC 1 cut(s) 94
BfaI CTAG 2 cut(s) 285, 420
BlnI CCTAGG 1 cut(s) 419
BmiI GGNNCC 2 cut(s) 375, 408
Bpu10I CCTNAGC 1 cut(s) 146
BsaJI CCNNGG 1 cut(s) 419
BsaXI ACNNNNNCTCC 2 cut(s) 134, 164
Bsc4I CCNNNNNNNGG 1 cut(s) 425
Bse3DI GCAATG 1 cut(s) 361
BseDI CCNNGG 1 cut(s) 419
BseLI CCNNNNNNNGG 1 cut(s) 425
BseMI GCAATG 1 cut(s) 361
BseMII CTCAG 3 cut(s) 137, 369, 377
BseX3I CGGCCG 1 cut(s) 34
Bsh1285I CGRYCG 2 cut(s) 37, 483
BshFI GGCC 1 cut(s) 36
BsiEI CGRYCG 2 cut(s) 37, 483
BsiHKAI GWGCWC 1 cut(s) 152
BslI CCNNNNNNNGG 1 cut(s) 425
BsmAI GTCTC 1 cut(s) 94
BsnI GGCC 1 cut(s) 36
Bsp1286I GDGCHC 1 cut(s) 152
Bsp143I GATC 5 cut(s) 8, 122, 179, 210, 406
BspACI CCGC 2 cut(s) 457, 479
BspANI GGCC 1 cut(s) 36
BspCNI CTCAG 3 cut(s) 138, 370, 376
BspLI GGNNCC 2 cut(s) 375, 408
BspPI GGATC 5 cut(s) 130, 187, 218, 401, 414
BsrBI CCGCTC 1 cut(s) 459
BsrDI GCAATG 1 cut(s) 361
BssECI CCNNGG 1 cut(s) 419
BssMI GATC 5 cut(s) 8, 122, 179, 210, 406
BssT1I CCWWGG 1 cut(s) 419
Bst4CI ACNGT 2 cut(s) 116, 191
Bst6I CTCTTC 2 cut(s) 79, 197
BstC8I GCNNGC 2 cut(s) 272, 461
BstDEI CTNAG 3 cut(s) 146, 363, 378
BstKTI GATC 5 cut(s) 11, 125, 182, 213, 409
BstMAI GTCTC 1 cut(s) 94
BstMBI GATC 5 cut(s) 8, 122, 179, 210, 406
BstMCI CGRYCG 2 cut(s) 37, 483
BstNSI RCATGY 2 cut(s) 107, 274
BstX2I RGATCY 2 cut(s) 122, 406
BstYI RGATCY 2 cut(s) 122, 406
BstZI CGGCCG 1 cut(s) 34
BsuRI GGCC 1 cut(s) 36
BtgZI GCGATG 1 cut(s) 399
Cac8I GCNNGC 2 cut(s) 272, 461
CseI GACGC 1 cut(s) 3
Csp6I GTAC 2 cut(s) 187, 442
CviAII CATG 4 cut(s) 97, 104, 199, 271
CviJI RGCY 4 cut(s) 36, 150, 322, 374
CviKI_1 RGCY 4 cut(s) 36, 150, 322, 374
CviQI GTAC 2 cut(s) 187, 442
DdeI CTNAG 3 cut(s) 146, 363, 378
DpnI GATC 5 cut(s) 10, 124, 181, 212, 408
DpnII GATC 5 cut(s) 8, 122, 179, 210, 406
EaeI YGGCCR 1 cut(s) 34
EagI CGGCCG 1 cut(s) 34
Eam1104I CTCTTC 2 cut(s) 79, 197
EarI CTCTTC 2 cut(s) 79, 197
Ecl136II GAGCTC 1 cut(s) 150
EclXI CGGCCG 1 cut(s) 34
Eco130I CCWWGG 1 cut(s) 419
Eco24I GRGCYC 1 cut(s) 152
Eco32I GATATC 1 cut(s) 448
Eco52I CGGCCG 1 cut(s) 34
Eco53kI GAGCTC 1 cut(s) 150
EcoICRI GAGCTC 1 cut(s) 150
EcoRV GATATC 1 cut(s) 448
EcoT14I CCWWGG 1 cut(s) 419
EcoT22I ATGCAT 1 cut(s) 272
EcoT38I GRGCYC 1 cut(s) 152
ErhI CCWWGG 1 cut(s) 419
FaeI CATG 4 cut(s) 100, 107, 202, 274
FaiI YATR 9 cut(s) 98, 105, 135, 200, 215, 272, 328, 348, 384
FatI CATG 4 cut(s) 96, 103, 198, 270
FriOI GRGCYC 1 cut(s) 152
FspBI CTAG 2 cut(s) 285, 420
HaeIII GGCC 1 cut(s) 36
HgaI GACGC 1 cut(s) 3
Hin1II CATG 4 cut(s) 100, 107, 202, 274
HincII GTYRAC 1 cut(s) 28
HindII GTYRAC 1 cut(s) 28
HindIII AAGCTT 1 cut(s) 320
HinfI GANTC 4 cut(s) 157, 162, 243, 453
HpaI GTTAAC 1 cut(s) 28
Hpy166II GTNNAC 1 cut(s) 28
Hpy188I TCNGA 4 cut(s) 179, 406, 411, 452
Hpy188III TCNNGA 3 cut(s) 285, 365, 377
Hpy8I GTNNAC 1 cut(s) 28
Hpy99I CGWCG 3 cut(s) 19, 35, 236
HpyAV CCTTC 2 cut(s) 364, 480
HpyCH4III ACNGT 2 cut(s) 116, 191
HpyCH4V TGCA 2 cut(s) 270, 386
HpyF3I CTNAG 3 cut(s) 146, 363, 378
Hsp92II CATG 4 cut(s) 100, 107, 202, 274
KspAI GTTAAC 1 cut(s) 28
Kzo9I GATC 5 cut(s) 8, 122, 179, 210, 406
LmnI GCTCC 2 cut(s) 155, 379
LpnPI CCDG 4 cut(s) 158, 236, 350, 390
MaeI CTAG 2 cut(s) 285, 420
MaeIII GTNAC 2 cut(s) 391, 433
MalI GATC 5 cut(s) 10, 124, 181, 212, 408
MbiI CCGCTC 1 cut(s) 459
MboI GATC 5 cut(s) 8, 122, 179, 210, 406
MflI RGATCY 2 cut(s) 122, 406
MhlI GDGCHC 1 cut(s) 152
MluCI AATT 3 cut(s) 53, 109, 343
MmeI TCCRAC 1 cut(s) 434
MnlI CCTC 2 cut(s) 229, 285
Mph1103I ATGCAT 1 cut(s) 272
MseI TTAA 2 cut(s) 27, 108
NdeII GATC 5 cut(s) 8, 122, 179, 210, 406
NlaIII CATG 4 cut(s) 100, 107, 202, 274
NlaIV GGNNCC 2 cut(s) 375, 408
NsiI ATGCAT 1 cut(s) 272
NspI RCATGY 2 cut(s) 107, 274
PaeI GCATGC 1 cut(s) 274
PciI ACATGT 1 cut(s) 103
PfeI GAWTC 4 cut(s) 157, 162, 243, 453
PscI ACATGT 1 cut(s) 103
Psp124BI GAGCTC 1 cut(s) 152
PspN4I GGNNCC 2 cut(s) 375, 408
PsuI RGATCY 2 cut(s) 122, 406
RsaI GTAC 2 cut(s) 188, 443
RsaNI GTAC 2 cut(s) 187, 442
SacI GAGCTC 1 cut(s) 152
SaqAI TTAA 2 cut(s) 27, 108
Sau3AI GATC 5 cut(s) 8, 122, 179, 210, 406
SduI GDGCHC 1 cut(s) 152
SetI ASST 5 cut(s) 147, 152, 255, 324, 472
SphI GCATGC 1 cut(s) 274
Sse9I AATT 3 cut(s) 53, 109, 343
SsiI CCGC 2 cut(s) 457, 479
SspMI CTAG 2 cut(s) 285, 420
SstI GAGCTC 1 cut(s) 152
StyI CCWWGG 1 cut(s) 419
TaaI ACNGT 2 cut(s) 116, 191
TaqI TCGA 5 cut(s) 160, 170, 231, 255, 307
TasI AATT 3 cut(s) 53, 109, 343
TfiI GAWTC 4 cut(s) 157, 162, 243, 453
Tru1I TTAA 2 cut(s) 27, 108
Tru9I TTAA 2 cut(s) 27, 108
TspDTI ATGAA 2 cut(s) 150, 215
XbaI TCTAGA 1 cut(s) 284
XceI RCATGY 2 cut(s) 107, 274
XmaJI CCTAGG 1 cut(s) 419
XspI CTAG 2 cut(s) 285, 420
Zsp2I ATGCAT 1 cut(s) 272
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.