FvH4_2g26960

protein At4g08330, chloroplastic-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0011319
Physical Location & Seq
Reverse (-)
21547667 .. 21549336
1670 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g26960.t1

Sequence Viewer

Length: 438 bp
ATGGACAATCCGACGGCTTTCAGAGGCGGTTATCTCAACGGAGCTTACCACCCTTCAGTATCTTCTTCTCGCGCCGATGTCAATTACAGCTGTGGCGCTTGTGGCTATGAGCTGAACCTGAGCTCTAACAACCGGAACACGTCTTTGATTGGATCTAACAAGTATGGGAAATCTATAAAGAGAGGGATCATATCGTTCTTTTACATTGATGAGAGCAGATTTAGTCAGGTTGATGAACTCCAATGTAAACCTCATTTCTCCAGGCGTTCGTGGGGTTTGTTCAGCCGGAGAACTAAACTTCTTTGTCGCAAGTGCGGTAACCATATAGGAAATGCTTACAATGATTATAGTTCTTCAGCTTCTTACCCACTCGTATCAGATGGATCATCAGATTGTTCATCCTCAGGCCGTCAAATTTACCATATGCAGAAAATATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

146

Amino Acids

16.17

Weight (kDa)

9.32

Isoelectric Point (pI)

47.19

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
At4g08330 PF24046 22 - 142 1.3e-46 At4g08330 beta-tent
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011319)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G08330 AT4G08330
fragaria_vesca FvH4_2g26960 FvH4_2g26960
malus_domestica MD08G1162700.v1.1 MD15G1348300.v1.1
prunus_persica Prupe.1G497200_v2.0.a1 Prupe.1G497200_v2.0.a1
pyrus_communis pycom08g14060 pycom15g31200
rosa_chinensis RchiOBHm_Chr6g0295821
rosa_laevigata RLG00000011765
rosa_multiflora Rmu_ssc0000086.1_g000001
rosa_roxburghii Rroxscaffold_7G00172150
rosa_rugosa Rorug06G0254100
rosa_samantha Rh6AG368100 Rh6BG375700 Rh6CG382000 Rh6DG368500
rosa_wichuraiana Rw6G032090

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 72
AciI CCGC 2 cut(s) 27, 315
AclWI GGATC 3 cut(s) 160, 194, 391
AcsI RAATTY 1 cut(s) 414
AcuI CTGAAG 2 cut(s) 39, 339
AflIII ACRYGT 1 cut(s) 138
AjiI CACGTC 1 cut(s) 141
AjnI CCWGG 1 cut(s) 260
AluBI AGCT 5 cut(s) 44, 90, 112, 123, 359
AluI AGCT 5 cut(s) 44, 90, 112, 123, 359
Alw21I GWGCWC 1 cut(s) 125
AlwI GGATC 3 cut(s) 160, 194, 391
AoxI GGCC 1 cut(s) 406
ApoI RAATTY 1 cut(s) 414
AspLEI GCGC 2 cut(s) 74, 98
AxyI CCTNAGG 1 cut(s) 403
BanII GRGCYC 1 cut(s) 125
Bbv12I GWGCWC 1 cut(s) 125
BccI CCATC 1 cut(s) 374
BceAI ACGGC 2 cut(s) 30, 393
BciT130I CCWGG 1 cut(s) 262
BfoI RGCGCY 1 cut(s) 99
Bme1390I CCNGG 1 cut(s) 262
BmgBI CACGTC 1 cut(s) 141
BmrFI CCNGG 1 cut(s) 262
BpmI CTGGAG 1 cut(s) 244
Bpu10I CCTNAGC 1 cut(s) 119
BsaWI WCCGGW 1 cut(s) 132
Bse21I CCTNAGG 1 cut(s) 403
BseBI CCWGG 1 cut(s) 262
BseGI GGATG 1 cut(s) 398
BseMII CTCAG 2 cut(s) 110, 417
Bsh1236I CGCG 1 cut(s) 72
BshFI GGCC 1 cut(s) 408
BsiHKAI GWGCWC 1 cut(s) 125
BsiSI CCGG 2 cut(s) 133, 286
BsnI GGCC 1 cut(s) 408
Bsp1286I GDGCHC 1 cut(s) 125
Bsp143I GATC 3 cut(s) 152, 186, 383
BspACI CCGC 2 cut(s) 27, 315
BspANI GGCC 1 cut(s) 408
BspCNI CTCAG 2 cut(s) 111, 416
BspFNI CGCG 1 cut(s) 72
BspPI GGATC 3 cut(s) 160, 194, 391
BssMI GATC 3 cut(s) 152, 186, 383
Bst2UI CCWGG 1 cut(s) 262
BstDEI CTNAG 2 cut(s) 119, 403
BstEII GGTNACC 1 cut(s) 317
BstF5I GGATG 1 cut(s) 398
BstFNI CGCG 1 cut(s) 72
BstH2I RGCGCY 1 cut(s) 99
BstHHI GCGC 2 cut(s) 74, 98
BstKTI GATC 3 cut(s) 155, 189, 386
BstMBI GATC 3 cut(s) 152, 186, 383
BstMWI GCNNNNNNNGC 1 cut(s) 102
BstNI CCWGG 1 cut(s) 262
BstPI GGTNACC 1 cut(s) 317
BstSCI CCNGG 1 cut(s) 260
BstUI CGCG 1 cut(s) 72
BstX2I RGATCY 1 cut(s) 152
BstYI RGATCY 1 cut(s) 152
Bsu36I CCTNAGG 1 cut(s) 403
BsuRI GGCC 1 cut(s) 408
BtrI CACGTC 1 cut(s) 141
BtsCI GGATG 1 cut(s) 398
CfoI GCGC 2 cut(s) 74, 98
CviJI RGCY 9 cut(s) 17, 44, 90, 105, 112, 123, 285, 359, 408
CviKI_1 RGCY 9 cut(s) 17, 44, 90, 105, 112, 123, 285, 359, 408
DdeI CTNAG 2 cut(s) 119, 403
DpnI GATC 3 cut(s) 154, 188, 385
DpnII GATC 3 cut(s) 152, 186, 383
Ecl136II GAGCTC 1 cut(s) 123
Eco24I GRGCYC 1 cut(s) 125
Eco53kI GAGCTC 1 cut(s) 123
Eco57I CTGAAG 2 cut(s) 39, 339
Eco81I CCTNAGG 1 cut(s) 403
Eco91I GGTNACC 1 cut(s) 317
EcoICRI GAGCTC 1 cut(s) 123
EcoO65I GGTNACC 1 cut(s) 317
EcoRII CCWGG 1 cut(s) 260
EcoT38I GRGCYC 1 cut(s) 125
FauNDI CATATG 1 cut(s) 423
FokI GGATG 1 cut(s) 385
FriOI GRGCYC 1 cut(s) 125
GlaI GCGC 2 cut(s) 73, 97
GsuI CTGGAG 1 cut(s) 244
HaeII RGCGCY 1 cut(s) 99
HaeIII GGCC 1 cut(s) 408
HapII CCGG 2 cut(s) 133, 286
HhaI GCGC 2 cut(s) 74, 98
Hin6I GCGC 2 cut(s) 72, 96
HinP1I GCGC 2 cut(s) 72, 96
HpaII CCGG 2 cut(s) 133, 286
Hpy166II GTNNAC 1 cut(s) 248
Hpy188I TCNGA 4 cut(s) 12, 23, 379, 391
Hpy8I GTNNAC 1 cut(s) 248
Hpy99I CGWCG 1 cut(s) 16
HpyAV CCTTC 1 cut(s) 63
HpyCH4IV ACGT 1 cut(s) 140
HpyCH4V TGCA 1 cut(s) 427
HpyF10VI GCNNNNNNNGC 1 cut(s) 102
HpyF3I CTNAG 2 cut(s) 119, 403
HpySE526I ACGT 1 cut(s) 140
HspAI GCGC 2 cut(s) 72, 96
Kzo9I GATC 3 cut(s) 152, 186, 383
LmnI GCTCC 1 cut(s) 41
LpnPI CCDG 7 cut(s) 131, 146, 212, 247, 274, 299, 390
MaeII ACGT 1 cut(s) 140
MaeIII GTNAC 1 cut(s) 317
MalI GATC 3 cut(s) 154, 188, 385
MboI GATC 3 cut(s) 152, 186, 383
MboII GAAGA 3 cut(s) 54, 57, 345
MflI RGATCY 1 cut(s) 152
MhlI GDGCHC 1 cut(s) 125
MluCI AATT 2 cut(s) 82, 414
MmeI TCCRAC 1 cut(s) 35
MnlI CCTC 4 cut(s) 17, 176, 261, 412
MspA1I CMGCKG 1 cut(s) 90
MspI CCGG 2 cut(s) 133, 286
MspR9I CCNGG 1 cut(s) 262
MvaI CCWGG 1 cut(s) 262
MvnI CGCG 1 cut(s) 72
MwoI GCNNNNNNNGC 1 cut(s) 102
NdeI CATATG 1 cut(s) 423
NdeII GATC 3 cut(s) 152, 186, 383
Psp124BI GAGCTC 1 cut(s) 125
Psp6I CCWGG 1 cut(s) 260
PspEI GGTNACC 1 cut(s) 317
PspGI CCWGG 1 cut(s) 260
PsuI RGATCY 1 cut(s) 152
PvuII CAGCTG 1 cut(s) 90
SacI GAGCTC 1 cut(s) 125
Sau3AI GATC 3 cut(s) 152, 186, 383
ScrFI CCNGG 1 cut(s) 262
SduI GDGCHC 1 cut(s) 125
SetI ASST 9 cut(s) 46, 92, 114, 120, 125, 143, 231, 253, 361
Sse9I AATT 2 cut(s) 82, 414
SsiI CCGC 2 cut(s) 27, 315
SstI GAGCTC 1 cut(s) 125
StyD4I CCNGG 1 cut(s) 260
TaiI ACGT 1 cut(s) 143
TasI AATT 2 cut(s) 82, 414
TspDTI ATGAA 2 cut(s) 249, 387
TspGWI ACGGA 1 cut(s) 54
XapI RAATTY 1 cut(s) 414
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.