pycom15g31200

protein At4g08330, chloroplastic-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr15
OG0011319
Physical Location & Seq
Forward (+)
29549376 .. 29549801
426 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom15g31200.1

Sequence Viewer

Length: 426 bp
ATGGAAATTGTTTTTTTGTGCAGCTGTGGCTCTTGTGGCTATGAGCTGAACCTAAGTTCCAACAACCGGAACACTTCTACAATTGGCTCTAATAAGTATGGAAAATCTATAAAGCGGGGGATCAGATCGTTCTTTAACATCGATGAGAGCAGATTTACTCAGGTTGTTGAACTTAAGTGTAAACCCCATTTCTCTAAGCGTTCATGGGGTTTGTTCAGCCGGAGAACTAAACTTCTTTGTCGCAAGTGTGGTAACCATATAGGAAACGCTTATGATGAGTACACTTCATCTTCTTACCCACTTGTGTTAGATGGATCAGATTCATCATCAGGCCATGAAGTTACCAAATGCAGAAAATTTGATGTTAGAATTCGTGCTTTGCAGCCTTCGAATTCTGAAGAATGTGGCACTTCGTTTTTAGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

142

Amino Acids

15.9

Weight (kDa)

9.08

Isoelectric Point (pI)

54.55

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
At4g08330 PF24046 6 - 130 1.5e-49 At4g08330 beta-tent
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011319)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G08330 AT4G08330
fragaria_vesca FvH4_2g26960 FvH4_2g26960
malus_domestica MD08G1162700.v1.1 MD15G1348300.v1.1
prunus_persica Prupe.1G497200_v2.0.a1 Prupe.1G497200_v2.0.a1
pyrus_communis pycom08g14060 pycom15g31200
rosa_chinensis RchiOBHm_Chr6g0295821
rosa_laevigata RLG00000011765
rosa_multiflora Rmu_ssc0000086.1_g000001
rosa_roxburghii Rroxscaffold_7G00172150
rosa_rugosa Rorug06G0254100
rosa_samantha Rh6AG368100 Rh6BG375700 Rh6CG382000 Rh6DG368500
rosa_wichuraiana Rw6G032090

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 115
AclWI GGATC 2 cut(s) 128, 322
AcsI RAATTY 3 cut(s) 356, 369, 391
AcuI CTGAAG 1 cut(s) 417
AfaI GTAC 1 cut(s) 281
AfiI CCNNNNNNNGG 1 cut(s) 66
AflII CTTAAG 1 cut(s) 173
AgsI TTSAA 1 cut(s) 170
AloI GAACNNNNNNTCC 2 cut(s) 41, 73
AluBI AGCT 2 cut(s) 24, 46
AluI AGCT 2 cut(s) 24, 46
AlwI GGATC 2 cut(s) 128, 322
AoxI GGCC 1 cut(s) 331
ApeKI GCWGC 2 cut(s) 21, 382
ApoI RAATTY 3 cut(s) 356, 369, 391
AsuII TTCGAA 1 cut(s) 389
BbvI GCAGC 2 cut(s) 33, 394
BccI CCATC 1 cut(s) 305
BfrI CTTAAG 1 cut(s) 173
BisI GCNGC 2 cut(s) 22, 383
BlsI GCNGC 2 cut(s) 23, 384
Bpu14I TTCGAA 1 cut(s) 389
Bsa29I ATCGAT 1 cut(s) 141
BsaWI WCCGGW 1 cut(s) 66
Bsc4I CCNNNNNNNGG 1 cut(s) 66
BseCI ATCGAT 1 cut(s) 141
BseLI CCNNNNNNNGG 1 cut(s) 66
BseMII CTCAG 1 cut(s) 173
BseXI GCAGC 2 cut(s) 33, 394
BsgI GTGCAG 1 cut(s) 40
BshFI GGCC 1 cut(s) 333
BshVI ATCGAT 1 cut(s) 141
BsiSI CCGG 2 cut(s) 67, 220
BslI CCNNNNNNNGG 1 cut(s) 66
BsnI GGCC 1 cut(s) 333
Bsp119I TTCGAA 1 cut(s) 389
Bsp143I GATC 3 cut(s) 120, 125, 314
BspACI CCGC 1 cut(s) 115
BspANI GGCC 1 cut(s) 333
BspCNI CTCAG 1 cut(s) 172
BspDI ATCGAT 1 cut(s) 141
BspPI GGATC 2 cut(s) 128, 322
BspT104I TTCGAA 1 cut(s) 389
BspTI CTTAAG 1 cut(s) 173
BssMI GATC 3 cut(s) 120, 125, 314
BstAFI CTTAAG 1 cut(s) 173
BstBI TTCGAA 1 cut(s) 389
BstDEI CTNAG 3 cut(s) 53, 159, 195
BstEII GGTNACC 1 cut(s) 251
BstKTI GATC 3 cut(s) 123, 128, 317
BstMBI GATC 3 cut(s) 120, 125, 314
BstMWI GCNNNNNNNGC 2 cut(s) 27, 36
BstPI GGTNACC 1 cut(s) 251
BstV1I GCAGC 2 cut(s) 33, 394
Bsu15I ATCGAT 1 cut(s) 141
BsuRI GGCC 1 cut(s) 333
BsuTUI ATCGAT 1 cut(s) 141
ClaI ATCGAT 1 cut(s) 141
Csp6I GTAC 1 cut(s) 280
CviAII CATG 2 cut(s) 204, 335
CviJI RGCY 8 cut(s) 24, 30, 39, 46, 87, 219, 333, 385
CviKI_1 RGCY 8 cut(s) 24, 30, 39, 46, 87, 219, 333, 385
CviQI GTAC 1 cut(s) 280
DdeI CTNAG 3 cut(s) 53, 159, 195
DpnI GATC 3 cut(s) 122, 127, 316
DpnII GATC 3 cut(s) 120, 125, 314
Eco57I CTGAAG 1 cut(s) 417
Eco91I GGTNACC 1 cut(s) 251
EcoO65I GGTNACC 1 cut(s) 251
EcoRI GAATTC 2 cut(s) 369, 391
FaeI CATG 2 cut(s) 207, 338
FaiI YATR 8 cut(s) 42, 99, 110, 205, 258, 260, 273, 336
FatI CATG 2 cut(s) 203, 334
FauI CCCGC 1 cut(s) 108
Fnu4HI GCNGC 2 cut(s) 22, 383
Fsp4HI GCNGC 2 cut(s) 22, 383
GluI GCNGC 2 cut(s) 22, 383
HaeIII GGCC 1 cut(s) 333
HapII CCGG 2 cut(s) 67, 220
Hin1II CATG 2 cut(s) 207, 338
HinfI GANTC 1 cut(s) 320
HpaII CCGG 2 cut(s) 67, 220
Hpy166II GTNNAC 2 cut(s) 182, 282
Hpy188I TCNGA 3 cut(s) 125, 319, 397
Hpy8I GTNNAC 2 cut(s) 182, 282
HpyAV CCTTC 1 cut(s) 396
HpyCH4V TGCA 3 cut(s) 21, 351, 382
HpyF10VI GCNNNNNNNGC 2 cut(s) 27, 36
HpyF3I CTNAG 3 cut(s) 53, 159, 195
Hsp92II CATG 2 cut(s) 207, 338
Kzo9I GATC 3 cut(s) 120, 125, 314
LpnPI CCDG 4 cut(s) 80, 146, 233, 315
Lsp1109I GCAGC 2 cut(s) 33, 394
MaeIII GTNAC 2 cut(s) 251, 340
MalI GATC 3 cut(s) 122, 127, 316
MboI GATC 3 cut(s) 120, 125, 314
MboII GAAGA 2 cut(s) 282, 410
MfeI CAATTG 1 cut(s) 81
MluCI AATT 5 cut(s) 6, 81, 356, 369, 391
MmeI TCCRAC 1 cut(s) 84
MseI TTAA 2 cut(s) 135, 174
MspA1I CMGCKG 1 cut(s) 24
MspCI CTTAAG 1 cut(s) 173
MspI CCGG 2 cut(s) 67, 220
MunI CAATTG 1 cut(s) 81
MwoI GCNNNNNNNGC 2 cut(s) 27, 36
NdeII GATC 3 cut(s) 120, 125, 314
NlaIII CATG 2 cut(s) 207, 338
NspV TTCGAA 1 cut(s) 389
PfeI GAWTC 1 cut(s) 320
PkrI GCNGC 2 cut(s) 23, 384
PspEI GGTNACC 1 cut(s) 251
PvuII CAGCTG 1 cut(s) 24
RsaI GTAC 1 cut(s) 281
RsaNI GTAC 1 cut(s) 280
SaqAI TTAA 2 cut(s) 135, 174
SatI GCNGC 2 cut(s) 22, 383
Sau3AI GATC 3 cut(s) 120, 125, 314
SetI ASST 4 cut(s) 26, 48, 54, 165
SfuI TTCGAA 1 cut(s) 389
SmlI CTYRAG 1 cut(s) 173
SmoI CTYRAG 1 cut(s) 173
Sse9I AATT 5 cut(s) 6, 81, 356, 369, 391
SsiI CCGC 1 cut(s) 115
TaqI TCGA 2 cut(s) 141, 389
TasI AATT 5 cut(s) 6, 81, 356, 369, 391
TatI WGTACW 1 cut(s) 279
TfiI GAWTC 1 cut(s) 320
Tru1I TTAA 2 cut(s) 135, 174
Tru9I TTAA 2 cut(s) 135, 174
TseI GCWGC 2 cut(s) 21, 382
TspDTI ATGAA 4 cut(s) 192, 276, 312, 351
Vha464I CTTAAG 1 cut(s) 173
XapI RAATTY 3 cut(s) 356, 369, 391
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.