RchiOBHm_Chr6g0295821

protein At4g08330, chloroplastic-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0011319
Physical Location & Seq
Reverse (-)
57724926 .. 57726759
1834 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ26550

Sequence Viewer

Length: 501 bp
ATGGAGAATCCGACGATTTTCAGAGGCAGTTATCTAAATGGAGCTTACCAGCCTCCCCTATCTTCTTCTTCTCGCGCCGATGTCAATTACAGCTGTGGTGCTTGTGGTTATGAGCTAAACCTGAGCTCTAATAACCGGAACACATCTTTGATTGGCTCTAATAAGTACGGGAAATCTATAAAGAGAGGGATCATATCGTTCTTTTACATTGATGAGAGCAGATTTAGTCAGGTTGATGAACTTCAGTGTAAGCCCCATTTCTCTAGGCGTTCTTGGGGTCTGTTCAGCCGGAGAACTAAACTTCTTTGTCGCAAGTGCAGTAACCATATAGGAAATGCTTATGATGATTTTACTTCTCCGGCTTCGTACCCACTCGTATCAGATGGATCAGATTCTTCATCCTCAGGCCGTCAAATTTCTAAATGCAGAAAATATGATGTTAGAATTCGCTCTTTGCAGCCCTCGAATTCTGAAGAATGCGGCCCTTCGTTTTTAGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

166

Amino Acids

18.59

Weight (kDa)

9.12

Isoelectric Point (pI)

63.64

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
At4g08330 PF24046 23 - 155 6.8e-52 At4g08330 beta-tent
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0011319)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G08330 AT4G08330
fragaria_vesca FvH4_2g26960 FvH4_2g26960
malus_domestica MD08G1162700.v1.1 MD15G1348300.v1.1
prunus_persica Prupe.1G497200_v2.0.a1 Prupe.1G497200_v2.0.a1
pyrus_communis pycom08g14060 pycom15g31200
rosa_chinensis RchiOBHm_Chr6g0295821
rosa_laevigata RLG00000011765
rosa_multiflora Rmu_ssc0000086.1_g000001
rosa_roxburghii Rroxscaffold_7G00172150
rosa_rugosa Rorug06G0254100
rosa_samantha Rh6AG368100 Rh6BG375700 Rh6CG382000 Rh6DG368500
rosa_wichuraiana Rw6G032090

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 75
AciI CCGC 1 cut(s) 480
AclWI GGATC 2 cut(s) 197, 394
AcsI RAATTY 3 cut(s) 414, 444, 466
AcuI CTGAAG 2 cut(s) 227, 492
AfaI GTAC 2 cut(s) 167, 368
AluBI AGCT 4 cut(s) 44, 93, 115, 126
AluI AGCT 4 cut(s) 44, 93, 115, 126
Alw21I GWGCWC 1 cut(s) 128
AlwI GGATC 2 cut(s) 197, 394
AoxI GGCC 2 cut(s) 406, 481
ApeKI GCWGC 1 cut(s) 457
ApoI RAATTY 3 cut(s) 414, 444, 466
AspLEI GCGC 1 cut(s) 77
AspS9I GGNCC 1 cut(s) 482
AxyI CCTNAGG 1 cut(s) 403
BanII GRGCYC 1 cut(s) 128
Bbv12I GWGCWC 1 cut(s) 128
BbvI GCAGC 1 cut(s) 469
BccI CCATC 1 cut(s) 377
BceAI ACGGC 1 cut(s) 393
BfaI CTAG 1 cut(s) 264
BisI GCNGC 2 cut(s) 458, 481
BlsI GCNGC 2 cut(s) 459, 482
BmgT120I GGNCC 1 cut(s) 482
Bpu10I CCTNAGC 1 cut(s) 122
BsaWI WCCGGW 1 cut(s) 135
Bse21I CCTNAGG 1 cut(s) 403
BseGI GGATG 1 cut(s) 398
BseMII CTCAG 2 cut(s) 113, 417
BseXI GCAGC 1 cut(s) 469
BsgI GTGCAG 1 cut(s) 337
Bsh1236I CGCG 1 cut(s) 75
BshFI GGCC 2 cut(s) 408, 483
BsiHKAI GWGCWC 1 cut(s) 128
BsiSI CCGG 3 cut(s) 136, 289, 359
BsmI GAATGC 1 cut(s) 482
BsnI GGCC 2 cut(s) 408, 483
Bsp1286I GDGCHC 1 cut(s) 128
Bsp143I GATC 2 cut(s) 189, 386
BspACI CCGC 1 cut(s) 480
BspANI GGCC 2 cut(s) 408, 483
BspCNI CTCAG 2 cut(s) 114, 416
BspFNI CGCG 1 cut(s) 75
BspPI GGATC 2 cut(s) 197, 394
BssMI GATC 2 cut(s) 189, 386
BstDEI CTNAG 2 cut(s) 122, 403
BstF5I GGATG 1 cut(s) 398
BstFNI CGCG 1 cut(s) 75
BstHHI GCGC 1 cut(s) 77
BstKTI GATC 2 cut(s) 192, 389
BstMBI GATC 2 cut(s) 189, 386
BstUI CGCG 1 cut(s) 75
BstV1I GCAGC 1 cut(s) 469
Bsu36I CCTNAGG 1 cut(s) 403
BsuRI GGCC 2 cut(s) 408, 483
BtsCI GGATG 1 cut(s) 398
BtsIMutI CAGTG 1 cut(s) 251
CfoI GCGC 1 cut(s) 77
Cfr13I GGNCC 1 cut(s) 482
Csp6I GTAC 2 cut(s) 166, 367
CviQI GTAC 2 cut(s) 166, 367
DdeI CTNAG 2 cut(s) 122, 403
DpnI GATC 2 cut(s) 191, 388
DpnII GATC 2 cut(s) 189, 386
Ecl136II GAGCTC 1 cut(s) 126
Eco24I GRGCYC 1 cut(s) 128
Eco53kI GAGCTC 1 cut(s) 126
Eco57I CTGAAG 2 cut(s) 227, 492
Eco81I CCTNAGG 1 cut(s) 403
EcoICRI GAGCTC 1 cut(s) 126
EcoRI GAATTC 2 cut(s) 444, 466
EcoT38I GRGCYC 1 cut(s) 128
FaiI YATR 7 cut(s) 111, 179, 194, 327, 329, 342, 435
Fnu4HI GCNGC 2 cut(s) 458, 481
FokI GGATG 1 cut(s) 385
FriOI GRGCYC 1 cut(s) 128
Fsp4HI GCNGC 2 cut(s) 458, 481
FspBI CTAG 1 cut(s) 264
GlaI GCGC 1 cut(s) 76
GluI GCNGC 2 cut(s) 458, 481
HaeIII GGCC 2 cut(s) 408, 483
HapII CCGG 3 cut(s) 136, 289, 359
HhaI GCGC 1 cut(s) 77
Hin6I GCGC 1 cut(s) 75
HinP1I GCGC 1 cut(s) 75
HinfI GANTC 2 cut(s) 7, 392
HpaII CCGG 3 cut(s) 136, 289, 359
Hpy188I TCNGA 5 cut(s) 12, 23, 382, 391, 472
Hpy99I CGWCG 1 cut(s) 16
HpyAV CCTTC 1 cut(s) 495
HpyCH4V TGCA 3 cut(s) 318, 426, 457
HpyF3I CTNAG 2 cut(s) 122, 403
HspAI GCGC 1 cut(s) 75
Kzo9I GATC 2 cut(s) 189, 386
LmnI GCTCC 1 cut(s) 41
LpnPI CCDG 7 cut(s) 62, 134, 149, 215, 302, 372, 390
Lsp1109I GCAGC 1 cut(s) 469
MaeI CTAG 1 cut(s) 264
MaeIII GTNAC 1 cut(s) 320
MalI GATC 2 cut(s) 191, 388
MboI GATC 2 cut(s) 189, 386
MboII GAAGA 5 cut(s) 54, 57, 60, 387, 485
MhlI GDGCHC 1 cut(s) 128
MluCI AATT 4 cut(s) 85, 414, 444, 466
MmeI TCCRAC 1 cut(s) 35
MnlI CCTC 5 cut(s) 17, 63, 179, 412, 472
MspA1I CMGCKG 1 cut(s) 93
MspI CCGG 3 cut(s) 136, 289, 359
Mva1269I GAATGC 1 cut(s) 482
MvnI CGCG 1 cut(s) 75
NdeII GATC 2 cut(s) 189, 386
PctI GAATGC 1 cut(s) 482
PfeI GAWTC 2 cut(s) 7, 392
PkrI GCNGC 2 cut(s) 459, 482
Psp124BI GAGCTC 1 cut(s) 128
PspPI GGNCC 1 cut(s) 482
PvuII CAGCTG 1 cut(s) 93
RsaI GTAC 2 cut(s) 167, 368
RsaNI GTAC 2 cut(s) 166, 367
SacI GAGCTC 1 cut(s) 128
SatI GCNGC 2 cut(s) 458, 481
Sau3AI GATC 2 cut(s) 189, 386
Sau96I GGNCC 1 cut(s) 482
SduI GDGCHC 1 cut(s) 128
SetI ASST 6 cut(s) 46, 95, 117, 123, 128, 234
Sse9I AATT 4 cut(s) 85, 414, 444, 466
SsiI CCGC 1 cut(s) 480
SspMI CTAG 1 cut(s) 264
SstI GAGCTC 1 cut(s) 128
TaqI TCGA 1 cut(s) 464
TasI AATT 4 cut(s) 85, 414, 444, 466
TauI GCSGC 1 cut(s) 483
TfiI GAWTC 2 cut(s) 7, 392
TscAI CASTG 1 cut(s) 251
TseI GCWGC 1 cut(s) 457
TspDTI ATGAA 2 cut(s) 252, 387
TspRI CASTG 1 cut(s) 251
XapI RAATTY 3 cut(s) 414, 444, 466
XspI CTAG 1 cut(s) 264
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.