Rorug06G0254100

protein At4g08330, chloroplastic-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0011319
Physical Location & Seq
Reverse (-)
40043519 .. 40044004
486 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0254100.1

Sequence Viewer

Length: 486 bp
ATGTTTTGGAGCGATGACGTGAAAGCGAAGATTGGTACTGTTTCAAATCATCACATGGATCTGTTCATTGATGGTGGGACTGGAAACCCTAGATGGAGAATAACAGGGTTTTATGGCTATGCAAGTACGGCTAAACGTGATCGTTCCTGGCAGCTCTTACGTGATTTGCGAGATCTAGACGCACTGCCATGGGTTGTGATTAGGGATTTCAATGAAATCCTCAATAACAGCAAGAAAATAGATGGTCCGGTGAAGGCAGAACGACAGATGCGAGGTTTTCGAGACGCTCTCGGATATGGAGACTTACTCGATCTAGGGTTTCAGAGACCTCAGTCCACATGGTGGAATTCCAATACCCAACTCCGGCTTGATAGAGCGGTTTGCACACCTTCCTGGTTCGATATCTTTGGCCATGCTAGGTTGCGCAATCTACCACCAAGTGATTCGGGTCATGTCCCAATCCTGCTTCATGCGAGTACTGCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

161

Amino Acids

18.45

Weight (kDa)

9.24

Isoelectric Point (pI)

39.26

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011319)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G08330 AT4G08330
fragaria_vesca FvH4_2g26960 FvH4_2g26960
malus_domestica MD08G1162700.v1.1 MD15G1348300.v1.1
prunus_persica Prupe.1G497200_v2.0.a1 Prupe.1G497200_v2.0.a1
pyrus_communis pycom08g14060 pycom15g31200
rosa_chinensis RchiOBHm_Chr6g0295821
rosa_laevigata RLG00000011765
rosa_multiflora Rmu_ssc0000086.1_g000001
rosa_roxburghii Rroxscaffold_7G00172150
rosa_rugosa Rorug06G0254100
rosa_samantha Rh6AG368100 Rh6BG375700 Rh6CG382000 Rh6DG368500
rosa_wichuraiana Rw6G032090

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 425
AccB7I CCANNNNNTGG 1 cut(s) 342
AccBSI CCGCTC 1 cut(s) 377
AciI CCGC 1 cut(s) 377
AclWI GGATC 1 cut(s) 66
AcoI YGGCCR 1 cut(s) 409
AcsI RAATTY 1 cut(s) 346
AdeI CACNNNGTG 2 cut(s) 342, 440
AfaI GTAC 3 cut(s) 37, 127, 478
AfiI CCNNNNNNNGG 2 cut(s) 342, 363
AgsI TTSAA 2 cut(s) 45, 211
AjiI CACGTC 1 cut(s) 19
AjnI CCWGG 2 cut(s) 146, 392
AluBI AGCT 1 cut(s) 154
AluI AGCT 1 cut(s) 154
Alw26I GTCTC 3 cut(s) 276, 294, 319
AlwI GGATC 1 cut(s) 66
AoxI GGCC 1 cut(s) 409
ApeKI GCWGC 1 cut(s) 151
ApoI RAATTY 1 cut(s) 346
AspLEI GCGC 1 cut(s) 426
AspS9I GGNCC 1 cut(s) 245
AsuHPI GGTGA 1 cut(s) 262
AvaII GGWCC 1 cut(s) 245
BalI TGGCCA 1 cut(s) 411
BbvI GCAGC 1 cut(s) 163
BccI CCATC 3 cut(s) 65, 87, 236
BceAI ACGGC 1 cut(s) 144
BciT130I CCWGG 2 cut(s) 148, 394
BcoDI GTCTC 3 cut(s) 276, 294, 319
BfaI CTAG 4 cut(s) 90, 176, 314, 417
BglII AGATCT 1 cut(s) 172
BisI GCNGC 1 cut(s) 152
BlsI GCNGC 1 cut(s) 153
BmcAI AGTACT 1 cut(s) 478
Bme1390I CCNGG 2 cut(s) 148, 394
Bme18I GGWCC 1 cut(s) 245
BmgBI CACGTC 1 cut(s) 19
BmgT120I GGNCC 1 cut(s) 245
BmrFI CCNGG 2 cut(s) 148, 394
BmsI GCATC 1 cut(s) 258
BoxI GACNNNNGTC 1 cut(s) 331
BplI GAGNNNNNCTC 4 cut(s) 273, 305, 291, 323
BsaAI YACGTR 1 cut(s) 161
BsaI GGTCTC 1 cut(s) 319
BsaJI CCNNGG 1 cut(s) 188
BsaWI WCCGGW 1 cut(s) 247
Bsc4I CCNNNNNNNGG 2 cut(s) 342, 363
Bse1I ACTGG 1 cut(s) 85
BseBI CCWGG 2 cut(s) 148, 394
BseDI CCNNGG 1 cut(s) 188
BseLI CCNNNNNNNGG 2 cut(s) 342, 363
BseMII CTCAG 1 cut(s) 344
BseNI ACTGG 1 cut(s) 85
BseXI GCAGC 1 cut(s) 163
BshFI GGCC 1 cut(s) 411
BsiSI CCGG 2 cut(s) 248, 364
BslFI GGGAC 2 cut(s) 91, 440
BslI CCNNNNNNNGG 2 cut(s) 342, 363
BsmAI GTCTC 3 cut(s) 276, 294, 319
BsmBI CGTCTC 1 cut(s) 276
BsmFI GGGAC 2 cut(s) 91, 440
BsnI GGCC 1 cut(s) 411
Bso31I GGTCTC 1 cut(s) 319
Bsp143I GATC 4 cut(s) 58, 139, 172, 310
Bsp19I CCATGG 1 cut(s) 188
BspACI CCGC 1 cut(s) 377
BspANI GGCC 1 cut(s) 411
BspCNI CTCAG 1 cut(s) 343
BspPI GGATC 1 cut(s) 66
BspTNI GGTCTC 1 cut(s) 319
BsrBI CCGCTC 1 cut(s) 377
BsrI ACTGG 1 cut(s) 85
BssECI CCNNGG 1 cut(s) 188
BssMI GATC 4 cut(s) 58, 139, 172, 310
BssT1I CCWWGG 1 cut(s) 188
Bst2UI CCWGG 2 cut(s) 148, 394
Bst4CI ACNGT 1 cut(s) 40
BstBAI YACGTR 1 cut(s) 161
BstDEI CTNAG 1 cut(s) 330
BstDSI CCRYGG 1 cut(s) 188
BstHHI GCGC 1 cut(s) 426
BstKTI GATC 4 cut(s) 61, 142, 175, 313
BstMAI GTCTC 3 cut(s) 276, 294, 319
BstMBI GATC 4 cut(s) 58, 139, 172, 310
BstMWI GCNNNNNNNGC 2 cut(s) 128, 479
BstNI CCWGG 2 cut(s) 148, 394
BstPAI GACNNNNGTC 1 cut(s) 331
BstSCI CCNGG 2 cut(s) 146, 392
BstV1I GCAGC 1 cut(s) 163
BstX2I RGATCY 2 cut(s) 58, 172
BstYI RGATCY 2 cut(s) 58, 172
BsuRI GGCC 1 cut(s) 411
BtgI CCRYGG 1 cut(s) 188
BtgZI GCGATG 1 cut(s) 27
BtrI CACGTC 1 cut(s) 19
BtsI GCAGTG 1 cut(s) 182
BtsIMutI CAGTG 1 cut(s) 182
CfoI GCGC 1 cut(s) 426
Cfr13I GGNCC 1 cut(s) 245
CseI GACGC 2 cut(s) 188, 293
Csp6I GTAC 3 cut(s) 36, 126, 477
CviAII CATG 6 cut(s) 55, 189, 339, 413, 452, 470
CviJI RGCY 5 cut(s) 117, 131, 154, 367, 411
CviKI_1 RGCY 5 cut(s) 117, 131, 154, 367, 411
CviQI GTAC 3 cut(s) 36, 126, 477
DdeI CTNAG 1 cut(s) 330
DpnI GATC 4 cut(s) 60, 141, 174, 312
DpnII GATC 4 cut(s) 58, 139, 172, 310
DraIII CACNNNGTG 2 cut(s) 342, 440
EaeI YGGCCR 1 cut(s) 409
Eco130I CCWWGG 1 cut(s) 188
Eco31I GGTCTC 1 cut(s) 319
Eco32I GATATC 1 cut(s) 403
Eco47I GGWCC 1 cut(s) 245
EcoRI GAATTC 1 cut(s) 346
EcoRII CCWGG 2 cut(s) 146, 392
EcoRV GATATC 1 cut(s) 403
EcoT14I CCWWGG 1 cut(s) 188
ErhI CCWWGG 1 cut(s) 188
Esp3I CGTCTC 1 cut(s) 276
FaeI CATG 6 cut(s) 58, 192, 342, 416, 455, 473
FaqI GGGAC 2 cut(s) 91, 440
FatI CATG 6 cut(s) 54, 188, 338, 412, 451, 469
Fnu4HI GCNGC 1 cut(s) 152
Fsp4HI GCNGC 1 cut(s) 152
FspBI CTAG 4 cut(s) 90, 176, 314, 417
FspI TGCGCA 1 cut(s) 425
GlaI GCGC 1 cut(s) 425
GluI GCNGC 1 cut(s) 152
HaeIII GGCC 1 cut(s) 411
HapII CCGG 2 cut(s) 248, 364
HgaI GACGC 2 cut(s) 188, 293
HhaI GCGC 1 cut(s) 426
Hin1II CATG 6 cut(s) 58, 192, 342, 416, 455, 473
Hin6I GCGC 1 cut(s) 424
HinP1I GCGC 1 cut(s) 424
HinfI GANTC 1 cut(s) 443
HpaII CCGG 2 cut(s) 248, 364
HphI GGTGA 1 cut(s) 262
Hpy166II GTNNAC 1 cut(s) 336
Hpy188I TCNGA 2 cut(s) 293, 324
Hpy188III TCNNGA 2 cut(s) 176, 281
Hpy8I GTNNAC 1 cut(s) 336
HpyAV CCTTC 2 cut(s) 247, 399
HpyCH4III ACNGT 1 cut(s) 40
HpyCH4IV ACGT 3 cut(s) 18, 136, 160
HpyCH4V TGCA 3 cut(s) 122, 384, 482
HpyF10VI GCNNNNNNNGC 2 cut(s) 128, 479
HpyF3I CTNAG 1 cut(s) 330
HpySE526I ACGT 3 cut(s) 18, 136, 160
Hsp92II CATG 6 cut(s) 58, 192, 342, 416, 455, 473
HspAI GCGC 1 cut(s) 424
Kzo9I GATC 4 cut(s) 58, 139, 172, 310
LmnI GCTCC 1 cut(s) 9
LpnPI CCDG 9 cut(s) 66, 90, 133, 160, 261, 377, 379, 406, 476
Lsp1109I GCAGC 1 cut(s) 163
LweI GCATC 1 cut(s) 258
MaeI CTAG 4 cut(s) 90, 176, 314, 417
MaeII ACGT 3 cut(s) 18, 136, 160
MalI GATC 4 cut(s) 60, 141, 174, 312
MbiI CCGCTC 1 cut(s) 377
MboI GATC 4 cut(s) 58, 139, 172, 310
MboII GAAGA 1 cut(s) 40
MflI RGATCY 2 cut(s) 58, 172
MlsI TGGCCA 1 cut(s) 411
MluCI AATT 1 cut(s) 346
MluNI TGGCCA 1 cut(s) 411
MnlI CCTC 3 cut(s) 230, 266, 339
Mox20I TGGCCA 1 cut(s) 411
MscI TGGCCA 1 cut(s) 411
MslI CAYNNNNRTG 1 cut(s) 187
Msp20I TGGCCA 1 cut(s) 411
MspI CCGG 2 cut(s) 248, 364
MspR9I CCNGG 2 cut(s) 148, 394
MvaI CCWGG 2 cut(s) 148, 394
MwoI GCNNNNNNNGC 2 cut(s) 128, 479
NcoI CCATGG 1 cut(s) 188
NdeII GATC 4 cut(s) 58, 139, 172, 310
NlaIII CATG 6 cut(s) 58, 192, 342, 416, 455, 473
NsbI TGCGCA 1 cut(s) 425
PcsI WCGNNNNNNNCGW 2 cut(s) 166, 268
PfeI GAWTC 1 cut(s) 443
PflMI CCANNNNNTGG 1 cut(s) 342
PkrI GCNGC 1 cut(s) 153
Ppu21I YACGTR 1 cut(s) 161
PshAI GACNNNNGTC 1 cut(s) 331
Psp6I CCWGG 2 cut(s) 146, 392
PspGI CCWGG 2 cut(s) 146, 392
PspPI GGNCC 1 cut(s) 245
PsuI RGATCY 2 cut(s) 58, 172
RsaI GTAC 3 cut(s) 37, 127, 478
RsaNI GTAC 3 cut(s) 36, 126, 477
RseI CAYNNNNRTG 1 cut(s) 187
SatI GCNGC 1 cut(s) 152
Sau3AI GATC 4 cut(s) 58, 139, 172, 310
Sau96I GGNCC 1 cut(s) 245
ScaI AGTACT 1 cut(s) 478
ScrFI CCNGG 2 cut(s) 148, 394
SetI ASST 8 cut(s) 21, 139, 156, 163, 277, 331, 391, 422
SfaNI GCATC 1 cut(s) 258
SinI GGWCC 1 cut(s) 245
SmiMI CAYNNNNRTG 1 cut(s) 187
Sse9I AATT 1 cut(s) 346
SsiI CCGC 1 cut(s) 377
SspMI CTAG 4 cut(s) 90, 176, 314, 417
StyD4I CCNGG 2 cut(s) 146, 392
StyI CCWWGG 1 cut(s) 188
TaaI ACNGT 1 cut(s) 40
TaiI ACGT 3 cut(s) 21, 139, 163
TaqI TCGA 3 cut(s) 280, 309, 399
TasI AATT 1 cut(s) 346
TatI WGTACW 1 cut(s) 476
TfiI GAWTC 1 cut(s) 443
TscAI CASTG 1 cut(s) 189
TseI GCWGC 1 cut(s) 151
TspDTI ATGAA 3 cut(s) 55, 228, 458
TspRI CASTG 1 cut(s) 189
Van91I CCANNNNNTGG 1 cut(s) 342
VpaK11BI GGWCC 1 cut(s) 245
XapI RAATTY 1 cut(s) 346
XbaI TCTAGA 1 cut(s) 175
XspI CTAG 4 cut(s) 90, 176, 314, 417
ZrmI AGTACT 1 cut(s) 478
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.