rRNA processing
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT4G08760 |
| fragaria_vesca | FvH4_4g36861 FvH4_4g36861 FvH4_4g36861 FvH4_4g36861 FvH4_5g39267 FvH4_5g39267 FvH4_5g39267 FvH4_5g39267 FvH4_5g39267 FvH4_5g39267 |
| rosa_chinensis | RchiOBHm_Chr4g0446621 |
| rosa_laevigata | RLG00000005644 |
| rosa_multiflora | Rmu_co7993076.1_g000001 Rmu_sc0030348.1_g000001 |
| rosa_rugosa | Rorug04G0373200 Rorug04G0373300 Rorug04G0373400 |
| rosa_samantha | Rh4AG434600 Rh4BG443700 Rh4CG461000 Rh4DG442500 |
| rosa_wichuraiana | Rw4G037150 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 629 |
| Acc65I | GGTACC | 1 cut(s) | 1407 |
| AccB1I | GGYRCC | 1 cut(s) | 1407 |
| AccBSI | CCGCTC | 1 cut(s) | 1414 |
| AccI | GTMKAC | 3 cut(s) | 1194, 1228, 1468 |
| AciI | CCGC | 1 cut(s) | 1412 |
| AclI | AACGTT | 1 cut(s) | 251 |
| AcoI | YGGCCR | 5 cut(s) | 42, 360, 1140, 1170, 1432 |
| AcsI | RAATTY | 3 cut(s) | 286, 458, 587 |
| AcuI | CTGAAG | 3 cut(s) | 323, 845, 869 |
| AfaI | GTAC | 3 cut(s) | 497, 1409, 1514 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 1060, 1120, 1189, 1404 |
| AflII | CTTAAG | 1 cut(s) | 322 |
| AgsI | TTSAA | 2 cut(s) | 659, 709 |
| AhdI | GACNNNNNGTC | 3 cut(s) | 1061, 1121, 1164 |
| AjiI | CACGTC | 2 cut(s) | 116, 672 |
| Alw21I | GWGCWC | 1 cut(s) | 1535 |
| Alw26I | GTCTC | 6 cut(s) | 95, 106, 803, 851, 1216, 1431 |
| Ama87I | CYCGRG | 2 cut(s) | 579, 1476 |
| AoxI | GGCC | 5 cut(s) | 42, 360, 1140, 1170, 1432 |
| ApeKI | GCWGC | 2 cut(s) | 223, 329 |
| ApoI | RAATTY | 3 cut(s) | 286, 458, 587 |
| AseI | ATTAAT | 1 cut(s) | 548 |
| Asp718I | GGTACC | 1 cut(s) | 1407 |
| AspS9I | GGNCC | 2 cut(s) | 1309, 1494 |
| AsuHPI | GGTGA | 6 cut(s) | 132, 662, 976, 1440, 1518, 1548 |
| AsuII | TTCGAA | 1 cut(s) | 1355 |
| AvaI | CYCGRG | 2 cut(s) | 579, 1476 |
| AvaII | GGWCC | 2 cut(s) | 1309, 1494 |
| AxyI | CCTNAGG | 1 cut(s) | 216 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 479, 512 |
| BalI | TGGCCA | 2 cut(s) | 44, 362 |
| BanI | GGYRCC | 1 cut(s) | 1407 |
| BanII | GRGCYC | 1 cut(s) | 1535 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 296, 328 |
| BauI | CACGAG | 1 cut(s) | 691 |
| Bbv12I | GWGCWC | 1 cut(s) | 1535 |
| BbvI | GCAGC | 2 cut(s) | 210, 341 |
| BccI | CCATC | 9 cut(s) | 121, 227, 287, 723, 1053, 1058, 1109, 1246, 1260 |
| BciVI | GTATCC | 1 cut(s) | 863 |
| BcoDI | GTCTC | 6 cut(s) | 95, 106, 803, 851, 1216, 1431 |
| BfaI | CTAG | 1 cut(s) | 1560 |
| BfrI | CTTAAG | 1 cut(s) | 322 |
| BfuI | GTATCC | 1 cut(s) | 863 |
| BisI | GCNGC | 2 cut(s) | 224, 330 |
| BlsI | GCNGC | 2 cut(s) | 225, 331 |
| BmcAI | AGTACT | 1 cut(s) | 1514 |
| Bme18I | GGWCC | 2 cut(s) | 1309, 1494 |
| BmeRI | GACNNNNNGTC | 3 cut(s) | 1061, 1121, 1164 |
| BmeT110I | CYCGRG | 2 cut(s) | 579, 1476 |
| BmgBI | CACGTC | 2 cut(s) | 116, 672 |
| BmgT120I | GGNCC | 2 cut(s) | 1309, 1494 |
| BmiI | GGNNCC | 2 cut(s) | 792, 1409 |
| BmsI | GCATC | 8 cut(s) | 51, 983, 994, 1275, 1307, 1356, 1381, 1387 |
| Bpu14I | TTCGAA | 1 cut(s) | 1355 |
| BsaBI | GATNNNNATC | 2 cut(s) | 136, 610 |
| BsaI | GGTCTC | 1 cut(s) | 803 |
| BsaJI | CCNNGG | 4 cut(s) | 45, 363, 978, 989 |
| BsaWI | WCCGGW | 4 cut(s) | 97, 142, 1306, 1491 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 1060, 1120, 1189, 1404 |
| Bse21I | CCTNAGG | 1 cut(s) | 216 |
| Bse8I | GATNNNNATC | 2 cut(s) | 136, 610 |
| BseDI | CCNNGG | 4 cut(s) | 45, 363, 978, 989 |
| BseJI | GATNNNNATC | 2 cut(s) | 136, 610 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 1060, 1120, 1189, 1404 |
| BseMII | CTCAG | 1 cut(s) | 1548 |
| BseRI | GAGGAG | 1 cut(s) | 1287 |
| BseXI | GCAGC | 2 cut(s) | 210, 341 |
| BseYI | CCCAGC | 2 cut(s) | 1500, 1504 |
| Bsh1285I | CGRYCG | 6 cut(s) | 278, 1061, 1091, 1121, 1164, 1190 |
| BshFI | GGCC | 5 cut(s) | 44, 362, 1142, 1172, 1434 |
| BshNI | GGYRCC | 1 cut(s) | 1407 |
| BsiEI | CGRYCG | 6 cut(s) | 278, 1061, 1091, 1121, 1164, 1190 |
| BsiHKAI | GWGCWC | 1 cut(s) | 1535 |
| BsiHKCI | CYCGRG | 2 cut(s) | 579, 1476 |
| BsiSI | CCGG | 4 cut(s) | 98, 143, 1307, 1492 |
| BslFI | GGGAC | 4 cut(s) | 294, 596, 613, 1083 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 1060, 1120, 1189, 1404 |
| BsmAI | GTCTC | 6 cut(s) | 95, 106, 803, 851, 1216, 1431 |
| BsmBI | CGTCTC | 2 cut(s) | 106, 1216 |
| BsmFI | GGGAC | 4 cut(s) | 294, 596, 613, 1083 |
| BsnI | GGCC | 5 cut(s) | 44, 362, 1142, 1172, 1434 |
| Bso31I | GGTCTC | 1 cut(s) | 803 |
| BsoBI | CYCGRG | 2 cut(s) | 579, 1476 |
| Bsp119I | TTCGAA | 1 cut(s) | 1355 |
| Bsp1286I | GDGCHC | 1 cut(s) | 1535 |
| Bsp19I | CCATGG | 1 cut(s) | 978 |
| BspACI | CCGC | 1 cut(s) | 1412 |
| BspANI | GGCC | 5 cut(s) | 44, 362, 1142, 1172, 1434 |
| BspCNI | CTCAG | 1 cut(s) | 1547 |
| BspLI | GGNNCC | 2 cut(s) | 792, 1409 |
| BspT104I | TTCGAA | 1 cut(s) | 1355 |
| BspT107I | GGYRCC | 1 cut(s) | 1407 |
| BspTI | CTTAAG | 1 cut(s) | 322 |
| BspTNI | GGTCTC | 1 cut(s) | 803 |
| BsrBI | CCGCTC | 1 cut(s) | 1414 |
| BssECI | CCNNGG | 4 cut(s) | 45, 363, 978, 989 |
| BssSI | CACGAG | 1 cut(s) | 691 |
| BssT1I | CCWWGG | 4 cut(s) | 45, 363, 978, 989 |
| Bst2BI | CACGAG | 1 cut(s) | 691 |
| Bst4CI | ACNGT | 5 cut(s) | 317, 1226, 1261, 1399, 1466 |
| Bst6I | CTCTTC | 4 cut(s) | 47, 61, 299, 1450 |
| BstAFI | CTTAAG | 1 cut(s) | 322 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 551, 746 |
| BstBI | TTCGAA | 1 cut(s) | 1355 |
| BstC8I | GCNNGC | 1 cut(s) | 703 |
| BstDEI | CTNAG | 4 cut(s) | 209, 216, 1215, 1534 |
| BstDSI | CCRYGG | 1 cut(s) | 978 |
| BstMAI | GTCTC | 6 cut(s) | 95, 106, 803, 851, 1216, 1431 |
| BstMCI | CGRYCG | 6 cut(s) | 278, 1061, 1091, 1121, 1164, 1190 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 551, 746, 1530, 1560 |
| BstNSI | RCATGY | 1 cut(s) | 1098 |
| BstV1I | GCAGC | 2 cut(s) | 210, 341 |
| BstX2I | RGATCY | 2 cut(s) | 605, 1200 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 1504 |
| BstYI | RGATCY | 2 cut(s) | 605, 1200 |
| Bsu36I | CCTNAGG | 1 cut(s) | 216 |
| BsuI | GTATCC | 1 cut(s) | 863 |
| BsuRI | GGCC | 5 cut(s) | 44, 362, 1142, 1172, 1434 |
| BtgI | CCRYGG | 1 cut(s) | 978 |
| BtgZI | GCGATG | 1 cut(s) | 1404 |
| BtrI | CACGTC | 2 cut(s) | 116, 672 |
| BtsIMutI | CAGTG | 1 cut(s) | 299 |
| Cac8I | GCNNGC | 1 cut(s) | 703 |
| Cfr13I | GGNCC | 2 cut(s) | 1309, 1494 |
| Csp6I | GTAC | 3 cut(s) | 496, 1408, 1513 |
| CviAII | CATG | 3 cut(s) | 356, 979, 1095 |
| CviQI | GTAC | 3 cut(s) | 496, 1408, 1513 |
| DdeI | CTNAG | 4 cut(s) | 209, 216, 1215, 1534 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 629 |
| DriI | GACNNNNNGTC | 3 cut(s) | 1061, 1121, 1164 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 629 |
| EaeI | YGGCCR | 5 cut(s) | 42, 360, 1140, 1170, 1432 |
| Eam1104I | CTCTTC | 4 cut(s) | 47, 61, 299, 1450 |
| Eam1105I | GACNNNNNGTC | 3 cut(s) | 1061, 1121, 1164 |
| EarI | CTCTTC | 4 cut(s) | 47, 61, 299, 1450 |
| Ecl136II | GAGCTC | 1 cut(s) | 1533 |
| Eco130I | CCWWGG | 4 cut(s) | 45, 363, 978, 989 |
| Eco24I | GRGCYC | 1 cut(s) | 1535 |
| Eco31I | GGTCTC | 1 cut(s) | 803 |
| Eco47I | GGWCC | 2 cut(s) | 1309, 1494 |
| Eco53kI | GAGCTC | 1 cut(s) | 1533 |
| Eco57I | CTGAAG | 3 cut(s) | 323, 845, 869 |
| Eco81I | CCTNAGG | 1 cut(s) | 216 |
| Eco88I | CYCGRG | 2 cut(s) | 579, 1476 |
| EcoICRI | GAGCTC | 1 cut(s) | 1533 |
| EcoT14I | CCWWGG | 4 cut(s) | 45, 363, 978, 989 |
| EcoT38I | GRGCYC | 1 cut(s) | 1535 |
| ErhI | CCWWGG | 4 cut(s) | 45, 363, 978, 989 |
| Esp3I | CGTCTC | 2 cut(s) | 106, 1216 |
| FaeI | CATG | 3 cut(s) | 359, 982, 1098 |
| FaiI | YATR | 9 cut(s) | 12, 41, 174, 357, 425, 445, 594, 980, 1096 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 827, 859 |
| FaqI | GGGAC | 4 cut(s) | 294, 596, 613, 1083 |
| FatI | CATG | 3 cut(s) | 355, 978, 1094 |
| FauI | CCCGC | 1 cut(s) | 1419 |
| FblI | GTMKAC | 3 cut(s) | 1194, 1228, 1468 |
| Fnu4HI | GCNGC | 2 cut(s) | 224, 330 |
| FriOI | GRGCYC | 1 cut(s) | 1535 |
| Fsp4HI | GCNGC | 2 cut(s) | 224, 330 |
| FspBI | CTAG | 1 cut(s) | 1560 |
| GluI | GCNGC | 2 cut(s) | 224, 330 |
| GsaI | CCCAGC | 2 cut(s) | 1504, 1508 |
| HaeIII | GGCC | 5 cut(s) | 44, 362, 1142, 1172, 1434 |
| HapII | CCGG | 4 cut(s) | 98, 143, 1307, 1492 |
| Hin1II | CATG | 3 cut(s) | 359, 982, 1098 |
| HincII | GTYRAC | 3 cut(s) | 915, 936, 1469 |
| HindII | GTYRAC | 3 cut(s) | 915, 936, 1469 |
| HinfI | GANTC | 4 cut(s) | 176, 611, 929, 1206 |
| HpaII | CCGG | 4 cut(s) | 98, 143, 1307, 1492 |
| HphI | GGTGA | 6 cut(s) | 132, 662, 976, 1440, 1518, 1548 |
| Hpy166II | GTNNAC | 7 cut(s) | 299, 488, 915, 936, 1195, 1229, 1469 |
| Hpy188III | TCNNGA | 6 cut(s) | 279, 581, 598, 1039, 1269, 1292 |
| Hpy8I | GTNNAC | 7 cut(s) | 299, 488, 915, 936, 1195, 1229, 1469 |
| Hpy99I | CGWCG | 3 cut(s) | 721, 1059, 1119 |
| HpyAV | CCTTC | 6 cut(s) | 51, 391, 656, 773, 860, 1330 |
| HpyCH4III | ACNGT | 5 cut(s) | 317, 1226, 1261, 1399, 1466 |
| HpyCH4IV | ACGT | 4 cut(s) | 115, 251, 384, 671 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 551, 746, 1530, 1560 |
| HpyF3I | CTNAG | 4 cut(s) | 209, 216, 1215, 1534 |
| HpySE526I | ACGT | 4 cut(s) | 115, 251, 384, 671 |
| Hsp92II | CATG | 3 cut(s) | 359, 982, 1098 |
| KpnI | GGTACC | 1 cut(s) | 1411 |
| LmnI | GCTCC | 3 cut(s) | 220, 231, 790 |
| Lsp1109I | GCAGC | 2 cut(s) | 210, 341 |
| LweI | GCATC | 8 cut(s) | 51, 983, 994, 1275, 1307, 1356, 1381, 1387 |
| MaeI | CTAG | 1 cut(s) | 1560 |
| MaeII | ACGT | 4 cut(s) | 115, 251, 384, 671 |
| MaeIII | GTNAC | 7 cut(s) | 116, 367, 572, 631, 650, 1330, 1361 |
| MbiI | CCGCTC | 1 cut(s) | 1414 |
| MfeI | CAATTG | 2 cut(s) | 491, 540 |
| MflI | RGATCY | 2 cut(s) | 605, 1200 |
| MhlI | GDGCHC | 1 cut(s) | 1535 |
| MlsI | TGGCCA | 2 cut(s) | 44, 362 |
| MluCI | AATT | 9 cut(s) | 286, 440, 458, 491, 540, 549, 565, 587, 709 |
| MluNI | TGGCCA | 2 cut(s) | 44, 362 |
| MmeI | TCCRAC | 9 cut(s) | 242, 374, 501, 1078, 1094, 1129, 1138, 1207, 1243 |
| Mox20I | TGGCCA | 2 cut(s) | 44, 362 |
| MscI | TGGCCA | 2 cut(s) | 44, 362 |
| MseI | TTAA | 4 cut(s) | 323, 548, 756, 773 |
| MslI | CAYNNNNRTG | 1 cut(s) | 354 |
| Msp20I | TGGCCA | 2 cut(s) | 44, 362 |
| MspA1I | CMGCKG | 3 cut(s) | 332, 1487, 1504 |
| MspCI | CTTAAG | 1 cut(s) | 322 |
| MspI | CCGG | 4 cut(s) | 98, 143, 1307, 1492 |
| MunI | CAATTG | 2 cut(s) | 491, 540 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 551, 746, 1530, 1560 |
| NcoI | CCATGG | 1 cut(s) | 978 |
| NlaIII | CATG | 3 cut(s) | 359, 982, 1098 |
| NlaIV | GGNNCC | 2 cut(s) | 792, 1409 |
| NmeAIII | GCCGAG | 1 cut(s) | 1460 |
| NmuCI | GTSAC | 6 cut(s) | 116, 367, 631, 650, 1330, 1361 |
| NspI | RCATGY | 1 cut(s) | 1098 |
| NspV | TTCGAA | 1 cut(s) | 1355 |
| PaeR7I | CTCGAG | 1 cut(s) | 1476 |
| PcsI | WCGNNNNNNNCGW | 5 cut(s) | 698, 1067, 1127, 1170, 1474 |
| PfeI | GAWTC | 4 cut(s) | 176, 611, 929, 1206 |
| PkrI | GCNGC | 2 cut(s) | 225, 331 |
| Ple19I | CGATCG | 6 cut(s) | 278, 1061, 1091, 1121, 1164, 1190 |
| PshBI | ATTAAT | 1 cut(s) | 548 |
| Psp124BI | GAGCTC | 1 cut(s) | 1535 |
| Psp1406I | AACGTT | 1 cut(s) | 251 |
| PspFI | CCCAGC | 2 cut(s) | 1500, 1504 |
| PspN4I | GGNNCC | 2 cut(s) | 792, 1409 |
| PspPI | GGNCC | 2 cut(s) | 1309, 1494 |
| PspXI | VCTCGAGB | 1 cut(s) | 1476 |
| PsuI | RGATCY | 2 cut(s) | 605, 1200 |
| PvuI | CGATCG | 6 cut(s) | 278, 1061, 1091, 1121, 1164, 1190 |
| PvuII | CAGCTG | 3 cut(s) | 332, 1487, 1504 |
| RsaI | GTAC | 3 cut(s) | 497, 1409, 1514 |
| RsaNI | GTAC | 3 cut(s) | 496, 1408, 1513 |
| RseI | CAYNNNNRTG | 1 cut(s) | 354 |
| SacI | GAGCTC | 1 cut(s) | 1535 |
| SalI | GTCGAC | 1 cut(s) | 1467 |
| SaqAI | TTAA | 4 cut(s) | 323, 548, 756, 773 |
| SatI | GCNGC | 2 cut(s) | 224, 330 |
| Sau96I | GGNCC | 2 cut(s) | 1309, 1494 |
| ScaI | AGTACT | 1 cut(s) | 1514 |
| SduI | GDGCHC | 1 cut(s) | 1535 |
| SfaNI | GCATC | 8 cut(s) | 51, 983, 994, 1275, 1307, 1356, 1381, 1387 |
| Sfr274I | CTCGAG | 1 cut(s) | 1476 |
| SfuI | TTCGAA | 1 cut(s) | 1355 |
| SinI | GGWCC | 2 cut(s) | 1309, 1494 |
| SlaI | CTCGAG | 1 cut(s) | 1476 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 354 |
| SmlI | CTYRAG | 2 cut(s) | 322, 1476 |
| SmoI | CTYRAG | 2 cut(s) | 322, 1476 |
| Sse9I | AATT | 9 cut(s) | 286, 440, 458, 491, 540, 549, 565, 587, 709 |
| SsiI | CCGC | 1 cut(s) | 1412 |
| SspI | AATATT | 1 cut(s) | 199 |
| SspMI | CTAG | 1 cut(s) | 1560 |
| SstI | GAGCTC | 1 cut(s) | 1535 |
| StyI | CCWWGG | 4 cut(s) | 45, 363, 978, 989 |
| TaaI | ACNGT | 5 cut(s) | 317, 1226, 1261, 1399, 1466 |
| TaiI | ACGT | 4 cut(s) | 118, 254, 387, 674 |
| TaqII | GACCGA | 5 cut(s) | 1051, 1111, 1154, 1180, 1537 |
| TasI | AATT | 9 cut(s) | 286, 440, 458, 491, 540, 549, 565, 587, 709 |
| TatI | WGTACW | 1 cut(s) | 1512 |
| TfiI | GAWTC | 4 cut(s) | 176, 611, 929, 1206 |
| Tru1I | TTAA | 4 cut(s) | 323, 548, 756, 773 |
| Tru9I | TTAA | 4 cut(s) | 323, 548, 756, 773 |
| TscAI | CASTG | 1 cut(s) | 306 |
| TseFI | GTSAC | 6 cut(s) | 116, 367, 631, 650, 1330, 1361 |
| TseI | GCWGC | 2 cut(s) | 223, 329 |
| Tsp45I | GTSAC | 6 cut(s) | 116, 367, 631, 650, 1330, 1361 |
| TspDTI | ATGAA | 2 cut(s) | 451, 750 |
| TspGWI | ACGGA | 7 cut(s) | 135, 386, 548, 1069, 1124, 1142, 1327 |
| TspRI | CASTG | 1 cut(s) | 306 |
| Vha464I | CTTAAG | 1 cut(s) | 322 |
| VpaK11BI | GGWCC | 2 cut(s) | 1309, 1494 |
| VspI | ATTAAT | 1 cut(s) | 548 |
| XapI | RAATTY | 3 cut(s) | 286, 458, 587 |
| XceI | RCATGY | 1 cut(s) | 1098 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 1259 |
| XhoI | CTCGAG | 1 cut(s) | 1476 |
| XmiI | GTMKAC | 3 cut(s) | 1194, 1228, 1468 |
| XspI | CTAG | 1 cut(s) | 1560 |
| ZrmI | AGTACT | 1 cut(s) | 1514 |