RNA recognition motif
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT4G08760 |
| fragaria_vesca | FvH4_4g36861 FvH4_4g36861 FvH4_4g36861 FvH4_4g36861 FvH4_5g39267 FvH4_5g39267 FvH4_5g39267 FvH4_5g39267 FvH4_5g39267 FvH4_5g39267 |
| rosa_chinensis | RchiOBHm_Chr4g0446621 |
| rosa_laevigata | RLG00000005644 |
| rosa_multiflora | Rmu_co7993076.1_g000001 Rmu_sc0030348.1_g000001 |
| rosa_rugosa | Rorug04G0373200 Rorug04G0373300 Rorug04G0373400 |
| rosa_samantha | Rh4AG434600 Rh4BG443700 Rh4CG461000 Rh4DG442500 |
| rosa_wichuraiana | Rw4G037150 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 2 cut(s) | 400, 775 |
| AccB1I | GGYRCC | 2 cut(s) | 1427, 1499 |
| AciI | CCGC | 4 cut(s) | 197, 1268, 1326, 1714 |
| AclWI | GGATC | 1 cut(s) | 1414 |
| AcoI | YGGCCR | 5 cut(s) | 1611, 1669, 1681, 1711, 1744 |
| AcsI | RAATTY | 1 cut(s) | 1118 |
| AcuI | CTGAAG | 3 cut(s) | 204, 453, 708 |
| AcyI | GRCGYC | 1 cut(s) | 1500 |
| AfaI | GTAC | 2 cut(s) | 328, 1386 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 1325, 1411, 1509, 1814, 1815 |
| AflIII | ACRYGT | 1 cut(s) | 1195 |
| AgsI | TTSAA | 8 cut(s) | 38, 678, 1093, 1100, 1126, 1243, 1600, 1834 |
| Alw21I | GWGCWC | 1 cut(s) | 784 |
| Alw26I | GTCTC | 3 cut(s) | 70, 138, 1267 |
| AlwI | GGATC | 1 cut(s) | 1414 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 47, 374 |
| ApeKI | GCWGC | 8 cut(s) | 41, 50, 314, 413, 659, 681, 770, 884 |
| ApoI | RAATTY | 1 cut(s) | 1118 |
| AspLEI | GCGC | 1 cut(s) | 1502 |
| AspS9I | GGNCC | 4 cut(s) | 425, 871, 1150, 1790 |
| AsuC2I | CCSGG | 1 cut(s) | 1809 |
| AsuHPI | GGTGA | 3 cut(s) | 1282, 1637, 1646 |
| AvaII | GGWCC | 3 cut(s) | 871, 1150, 1790 |
| BaeGI | GKGCMC | 1 cut(s) | 1432 |
| BanI | GGYRCC | 2 cut(s) | 1427, 1499 |
| BanII | GRGCYC | 1 cut(s) | 784 |
| BauI | CACGAG | 1 cut(s) | 1287 |
| BbsI | GAAGAC | 3 cut(s) | 179, 441, 1829 |
| Bbv12I | GWGCWC | 1 cut(s) | 784 |
| BbvI | GCAGC | 8 cut(s) | 37, 53, 301, 400, 646, 693, 757, 871 |
| BccI | CCATC | 5 cut(s) | 173, 796, 985, 1484, 1507 |
| BceAI | ACGGC | 5 cut(s) | 851, 1656, 1668, 1701, 1731 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 1289, 1323 |
| BclI | TGATCA | 2 cut(s) | 1165, 1567 |
| BcnI | CCSGG | 1 cut(s) | 1809 |
| BcoDI | GTCTC | 3 cut(s) | 70, 138, 1267 |
| BfaI | CTAG | 3 cut(s) | 585, 1794, 1799 |
| BfmI | CTRYAG | 1 cut(s) | 54 |
| BfoI | RGCGCY | 1 cut(s) | 1503 |
| BfuAI | ACCTGC | 2 cut(s) | 400, 775 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 1229 |
| Bme1390I | CCNGG | 1 cut(s) | 1809 |
| Bme18I | GGWCC | 3 cut(s) | 871, 1150, 1790 |
| BmgT120I | GGNCC | 4 cut(s) | 425, 871, 1150, 1790 |
| BmiI | GGNNCC | 3 cut(s) | 873, 1429, 1501 |
| BmrFI | CCNGG | 1 cut(s) | 1809 |
| BmsI | GCATC | 4 cut(s) | 565, 988, 1210, 1531 |
| BpiI | GAAGAC | 3 cut(s) | 179, 441, 1829 |
| BplI | GAGNNNNNCTC | 4 cut(s) | 356, 388, 1325, 1357 |
| BpmI | CTGGAG | 2 cut(s) | 426, 1256 |
| Bpu10I | CCTNAGC | 1 cut(s) | 621 |
| BpuEI | CTTGAG | 1 cut(s) | 510 |
| BpuMI | CCSGG | 1 cut(s) | 1809 |
| BsaHI | GRCGYC | 1 cut(s) | 1500 |
| BsaJI | CCNNGG | 5 cut(s) | 867, 1405, 1423, 1506, 1717 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 1325, 1411, 1509, 1814, 1815 |
| Bse118I | RCCGGY | 2 cut(s) | 1076, 1609 |
| Bse1I | ACTGG | 6 cut(s) | 62, 409, 428, 714, 1209, 1501 |
| BseDI | CCNNGG | 5 cut(s) | 867, 1405, 1423, 1506, 1717 |
| BseGI | GGATG | 7 cut(s) | 165, 262, 388, 607, 1135, 1476, 1518 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 1325, 1411, 1509, 1814, 1815 |
| BseMII | CTCAG | 1 cut(s) | 585 |
| BseNI | ACTGG | 6 cut(s) | 62, 409, 428, 714, 1209, 1501 |
| BseRI | GAGGAG | 8 cut(s) | 245, 248, 503, 559, 923, 926, 1150, 1308 |
| BseSI | GKGCMC | 1 cut(s) | 1432 |
| BseXI | GCAGC | 8 cut(s) | 37, 53, 301, 400, 646, 693, 757, 871 |
| BsgI | GTGCAG | 3 cut(s) | 179, 615, 1233 |
| BshNI | GGYRCC | 2 cut(s) | 1427, 1499 |
| BsiHKAI | GWGCWC | 1 cut(s) | 784 |
| BsiSI | CCGG | 3 cut(s) | 1077, 1610, 1809 |
| BslFI | GGGAC | 1 cut(s) | 857 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 1325, 1411, 1509, 1814, 1815 |
| BsmAI | GTCTC | 3 cut(s) | 70, 138, 1267 |
| BsmBI | CGTCTC | 1 cut(s) | 138 |
| BsmFI | GGGAC | 1 cut(s) | 857 |
| BsmI | GAATGC | 1 cut(s) | 763 |
| Bsp1286I | GDGCHC | 2 cut(s) | 784, 1432 |
| Bsp143I | GATC | 5 cut(s) | 1165, 1279, 1419, 1567, 1576 |
| BspACI | CCGC | 4 cut(s) | 197, 1268, 1326, 1714 |
| BspCNI | CTCAG | 1 cut(s) | 584 |
| BspLI | GGNNCC | 3 cut(s) | 873, 1429, 1501 |
| BspMI | ACCTGC | 2 cut(s) | 400, 775 |
| BspPI | GGATC | 1 cut(s) | 1414 |
| BspT107I | GGYRCC | 2 cut(s) | 1427, 1499 |
| BsrFI | RCCGGY | 2 cut(s) | 1076, 1609 |
| BsrI | ACTGG | 6 cut(s) | 62, 409, 428, 714, 1209, 1501 |
| BssAI | RCCGGY | 2 cut(s) | 1076, 1609 |
| BssECI | CCNNGG | 5 cut(s) | 867, 1405, 1423, 1506, 1717 |
| BssMI | GATC | 5 cut(s) | 1165, 1279, 1419, 1567, 1576 |
| BssNI | GRCGYC | 1 cut(s) | 1500 |
| BssSI | CACGAG | 1 cut(s) | 1287 |
| BssT1I | CCWWGG | 2 cut(s) | 1405, 1506 |
| Bst2BI | CACGAG | 1 cut(s) | 1287 |
| Bst4CI | ACNGT | 3 cut(s) | 286, 458, 1179 |
| Bst6I | CTCTTC | 4 cut(s) | 134, 210, 336, 945 |
| BstACI | GRCGYC | 1 cut(s) | 1500 |
| BstAPI | GCANNNNNTGC | 3 cut(s) | 47, 125, 1220 |
| BstC8I | GCNNGC | 4 cut(s) | 162, 267, 306, 1078 |
| BstDEI | CTNAG | 7 cut(s) | 69, 318, 435, 537, 571, 621, 1062 |
| BstDSI | CCRYGG | 2 cut(s) | 867, 1717 |
| BstF5I | GGATG | 7 cut(s) | 165, 262, 388, 607, 1135, 1476, 1518 |
| BstH2I | RGCGCY | 1 cut(s) | 1503 |
| BstHHI | GCGC | 1 cut(s) | 1502 |
| BstKTI | GATC | 5 cut(s) | 1168, 1282, 1422, 1570, 1579 |
| BstMAI | GTCTC | 3 cut(s) | 70, 138, 1267 |
| BstMBI | GATC | 5 cut(s) | 1165, 1279, 1419, 1567, 1576 |
| BstNSI | RCATGY | 1 cut(s) | 1199 |
| BstSCI | CCNGG | 1 cut(s) | 1807 |
| BstSFI | CTRYAG | 1 cut(s) | 54 |
| BstSLI | GKGCMC | 1 cut(s) | 1432 |
| BstV1I | GCAGC | 8 cut(s) | 37, 53, 301, 400, 646, 693, 757, 871 |
| BstV2I | GAAGAC | 3 cut(s) | 179, 441, 1829 |
| BstX2I | RGATCY | 1 cut(s) | 1419 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 1513 |
| BstYI | RGATCY | 1 cut(s) | 1419 |
| BtgI | CCRYGG | 2 cut(s) | 867, 1717 |
| BtgZI | GCGATG | 1 cut(s) | 1122 |
| BtsCI | GGATG | 7 cut(s) | 165, 262, 388, 607, 1135, 1476, 1518 |
| BtsI | GCAGTG | 1 cut(s) | 126 |
| BtsIMutI | CAGTG | 3 cut(s) | 126, 721, 1216 |
| BveI | ACCTGC | 2 cut(s) | 400, 775 |
| Cac8I | GCNNGC | 4 cut(s) | 162, 267, 306, 1078 |
| CaiI | CAGNNNCTG | 2 cut(s) | 47, 374 |
| CfoI | GCGC | 1 cut(s) | 1502 |
| Cfr10I | RCCGGY | 2 cut(s) | 1076, 1609 |
| Cfr13I | GGNCC | 4 cut(s) | 425, 871, 1150, 1790 |
| Csp6I | GTAC | 2 cut(s) | 327, 1385 |
| CspCI | CAANNNNNGTGG | 4 cut(s) | 16, 51, 849, 884 |
| CviAII | CATG | 2 cut(s) | 1196, 1522 |
| CviQI | GTAC | 2 cut(s) | 327, 1385 |
| DdeI | CTNAG | 7 cut(s) | 69, 318, 435, 537, 571, 621, 1062 |
| DinI | GGCGCC | 1 cut(s) | 1501 |
| DpnI | GATC | 5 cut(s) | 1167, 1281, 1421, 1569, 1578 |
| DpnII | GATC | 5 cut(s) | 1165, 1279, 1419, 1567, 1576 |
| EaeI | YGGCCR | 5 cut(s) | 1611, 1669, 1681, 1711, 1744 |
| Eam1104I | CTCTTC | 4 cut(s) | 134, 210, 336, 945 |
| EarI | CTCTTC | 4 cut(s) | 134, 210, 336, 945 |
| Ecl136II | GAGCTC | 1 cut(s) | 782 |
| Eco130I | CCWWGG | 2 cut(s) | 1405, 1506 |
| Eco24I | GRGCYC | 1 cut(s) | 784 |
| Eco47I | GGWCC | 3 cut(s) | 871, 1150, 1790 |
| Eco53kI | GAGCTC | 1 cut(s) | 782 |
| Eco57I | CTGAAG | 3 cut(s) | 204, 453, 708 |
| EcoICRI | GAGCTC | 1 cut(s) | 782 |
| EcoO109I | RGGNCCY | 1 cut(s) | 1790 |
| EcoRI | GAATTC | 1 cut(s) | 1118 |
| EcoT14I | CCWWGG | 2 cut(s) | 1405, 1506 |
| EcoT38I | GRGCYC | 1 cut(s) | 784 |
| EgeI | GGCGCC | 1 cut(s) | 1501 |
| EheI | GGCGCC | 1 cut(s) | 1501 |
| ErhI | CCWWGG | 2 cut(s) | 1405, 1506 |
| Esp3I | CGTCTC | 1 cut(s) | 138 |
| FaeI | CATG | 2 cut(s) | 1199, 1525 |
| FaiI | YATR | 8 cut(s) | 311, 1191, 1197, 1314, 1345, 1491, 1523, 1701 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 1294, 1326, 1814, 1846 |
| FaqI | GGGAC | 1 cut(s) | 857 |
| FatI | CATG | 2 cut(s) | 1195, 1521 |
| FbaI | TGATCA | 2 cut(s) | 1165, 1567 |
| FokI | GGATG | 7 cut(s) | 152, 269, 395, 614, 1142, 1463, 1525 |
| FriOI | GRGCYC | 1 cut(s) | 784 |
| FspBI | CTAG | 3 cut(s) | 585, 1794, 1799 |
| GlaI | GCGC | 1 cut(s) | 1501 |
| GsuI | CTGGAG | 2 cut(s) | 426, 1256 |
| HaeII | RGCGCY | 1 cut(s) | 1503 |
| HapII | CCGG | 3 cut(s) | 1077, 1610, 1809 |
| HhaI | GCGC | 1 cut(s) | 1502 |
| Hin1I | GRCGYC | 1 cut(s) | 1500 |
| Hin1II | CATG | 2 cut(s) | 1199, 1525 |
| Hin6I | GCGC | 1 cut(s) | 1500 |
| HinP1I | GCGC | 1 cut(s) | 1500 |
| HindIII | AAGCTT | 1 cut(s) | 1554 |
| HpaII | CCGG | 3 cut(s) | 1077, 1610, 1809 |
| HphI | GGTGA | 3 cut(s) | 1282, 1637, 1646 |
| Hpy188III | TCNNGA | 7 cut(s) | 112, 169, 1046, 1093, 1169, 1235, 1289 |
| Hpy99I | CGWCG | 5 cut(s) | 1057, 1060, 1677, 1689, 1752 |
| HpyAV | CCTTC | 7 cut(s) | 109, 172, 331, 637, 1166, 1345, 1840 |
| HpyCH4III | ACNGT | 3 cut(s) | 286, 458, 1179 |
| HpyCH4IV | ACGT | 1 cut(s) | 1052 |
| HpyCH4V | TGCA | 5 cut(s) | 160, 578, 632, 1214, 1435 |
| HpyF3I | CTNAG | 7 cut(s) | 69, 318, 435, 537, 571, 621, 1062 |
| HpySE526I | ACGT | 1 cut(s) | 1052 |
| Hsp92I | GRCGYC | 1 cut(s) | 1500 |
| Hsp92II | CATG | 2 cut(s) | 1199, 1525 |
| HspAI | GCGC | 1 cut(s) | 1500 |
| KasI | GGCGCC | 1 cut(s) | 1499 |
| KroI | GCCGGC | 1 cut(s) | 1076 |
| KroNI | GCCGGC | 1 cut(s) | 1078 |
| Ksp22I | TGATCA | 2 cut(s) | 1165, 1567 |
| Kzo9I | GATC | 5 cut(s) | 1165, 1279, 1419, 1567, 1576 |
| LmnI | GCTCC | 6 cut(s) | 49, 274, 572, 658, 1030, 1561 |
| Lsp1109I | GCAGC | 8 cut(s) | 37, 53, 301, 400, 646, 693, 757, 871 |
| LweI | GCATC | 4 cut(s) | 565, 988, 1210, 1531 |
| MaeI | CTAG | 3 cut(s) | 585, 1794, 1799 |
| MaeII | ACGT | 1 cut(s) | 1052 |
| MaeIII | GTNAC | 4 cut(s) | 625, 716, 815, 1368 |
| MalI | GATC | 5 cut(s) | 1167, 1281, 1421, 1569, 1578 |
| MboI | GATC | 5 cut(s) | 1165, 1279, 1419, 1567, 1576 |
| MflI | RGATCY | 1 cut(s) | 1419 |
| MhlI | GDGCHC | 2 cut(s) | 784, 1432 |
| MluCI | AATT | 3 cut(s) | 518, 1081, 1118 |
| Mly113I | GGCGCC | 1 cut(s) | 1500 |
| MlyI | GAGTC | 9 cut(s) | 245, 353, 365, 374, 455, 716, 812, 955, 971 |
| MmeI | TCCRAC | 1 cut(s) | 1630 |
| MroNI | GCCGGC | 1 cut(s) | 1076 |
| MspA1I | CMGCKG | 1 cut(s) | 1326 |
| MspI | CCGG | 3 cut(s) | 1077, 1610, 1809 |
| MspR9I | CCNGG | 1 cut(s) | 1809 |
| Mva1269I | GAATGC | 1 cut(s) | 763 |
| NaeI | GCCGGC | 1 cut(s) | 1078 |
| NarI | GGCGCC | 1 cut(s) | 1500 |
| NciI | CCSGG | 1 cut(s) | 1809 |
| NdeII | GATC | 5 cut(s) | 1165, 1279, 1419, 1567, 1576 |
| NgoMIV | GCCGGC | 1 cut(s) | 1076 |
| NlaIII | CATG | 2 cut(s) | 1199, 1525 |
| NlaIV | GGNNCC | 3 cut(s) | 873, 1429, 1501 |
| NmeAIII | GCCGAG | 2 cut(s) | 124, 469 |
| NmuCI | GTSAC | 3 cut(s) | 716, 815, 1368 |
| NspI | RCATGY | 1 cut(s) | 1199 |
| PciI | ACATGT | 1 cut(s) | 1195 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 1681, 1693 |
| PctI | GAATGC | 1 cut(s) | 763 |
| PdiI | GCCGGC | 1 cut(s) | 1078 |
| PflFI | GACNNNGTC | 1 cut(s) | 1362 |
| PleI | GAGTC | 9 cut(s) | 244, 352, 365, 373, 454, 716, 812, 955, 971 |
| PluTI | GGCGCC | 1 cut(s) | 1503 |
| PpsI | GAGTC | 9 cut(s) | 244, 352, 365, 373, 454, 716, 812, 955, 971 |
| PpuMI | RGGWCCY | 1 cut(s) | 1790 |
| PscI | ACATGT | 1 cut(s) | 1195 |
| Psp124BI | GAGCTC | 1 cut(s) | 784 |
| Psp5II | RGGWCCY | 1 cut(s) | 1790 |
| PspN4I | GGNNCC | 3 cut(s) | 873, 1429, 1501 |
| PspPI | GGNCC | 4 cut(s) | 425, 871, 1150, 1790 |
| PspPPI | RGGWCCY | 1 cut(s) | 1790 |
| PstNI | CAGNNNCTG | 2 cut(s) | 47, 374 |
| PsuI | RGATCY | 1 cut(s) | 1419 |
| PsyI | GACNNNGTC | 1 cut(s) | 1362 |
| RsaI | GTAC | 2 cut(s) | 328, 1386 |
| RsaNI | GTAC | 2 cut(s) | 327, 1385 |
| SacI | GAGCTC | 1 cut(s) | 784 |
| Sau3AI | GATC | 5 cut(s) | 1165, 1279, 1419, 1567, 1576 |
| Sau96I | GGNCC | 4 cut(s) | 425, 871, 1150, 1790 |
| SchI | GAGTC | 9 cut(s) | 245, 353, 365, 374, 455, 716, 812, 955, 971 |
| ScrFI | CCNGG | 1 cut(s) | 1809 |
| SduI | GDGCHC | 2 cut(s) | 784, 1432 |
| SfaNI | GCATC | 4 cut(s) | 565, 988, 1210, 1531 |
| SfcI | CTRYAG | 1 cut(s) | 54 |
| SfoI | GGCGCC | 1 cut(s) | 1501 |
| SinI | GGWCC | 3 cut(s) | 871, 1150, 1790 |
| SmlI | CTYRAG | 1 cut(s) | 525 |
| SmoI | CTYRAG | 1 cut(s) | 525 |
| Sse9I | AATT | 3 cut(s) | 518, 1081, 1118 |
| SsiI | CCGC | 4 cut(s) | 197, 1268, 1326, 1714 |
| SspDI | GGCGCC | 1 cut(s) | 1499 |
| SspI | AATATT | 1 cut(s) | 1380 |
| SspMI | CTAG | 3 cut(s) | 585, 1794, 1799 |
| SstI | GAGCTC | 1 cut(s) | 784 |
| StyD4I | CCNGG | 1 cut(s) | 1807 |
| StyI | CCWWGG | 2 cut(s) | 1405, 1506 |
| TaaI | ACNGT | 3 cut(s) | 286, 458, 1179 |
| TaiI | ACGT | 1 cut(s) | 1055 |
| TaqI | TCGA | 3 cut(s) | 111, 1675, 1687 |
| TasI | AATT | 3 cut(s) | 518, 1081, 1118 |
| TauI | GCSGC | 3 cut(s) | 199, 1329, 1716 |
| TscAI | CASTG | 3 cut(s) | 126, 721, 1216 |
| TseFI | GTSAC | 3 cut(s) | 716, 815, 1368 |
| TseI | GCWGC | 8 cut(s) | 41, 50, 314, 413, 659, 681, 770, 884 |
| Tsp45I | GTSAC | 3 cut(s) | 716, 815, 1368 |
| TspDTI | ATGAA | 7 cut(s) | 120, 237, 399, 624, 840, 951, 1506 |
| TspGWI | ACGGA | 1 cut(s) | 1142 |
| TspRI | CASTG | 3 cut(s) | 126, 721, 1216 |
| Tth111I | GACNNNGTC | 1 cut(s) | 1362 |
| VpaK11BI | GGWCC | 3 cut(s) | 871, 1150, 1790 |
| XapI | RAATTY | 1 cut(s) | 1118 |
| XceI | RCATGY | 1 cut(s) | 1199 |
| XspI | CTAG | 3 cut(s) | 585, 1794, 1799 |