Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co7993076.1

Orthogroup ID

OG0008326

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 521

Gene Structure 521 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co7993076.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 346 bp

agataacacgggtgtccatcccaaaagattatgaaactggcgcctccaaggggatggcctacatggacttctcatctgcggatgctttcagcaaagctttggagcttgatcaaagtgatcttggaaatagctgttatttgaatgtccaaccggccaaacctaaaggtgattttggagagaggaattctggtgttcgttttgataatggtggccgtcgaggtggccgtcgaggtggccgttatgagagtggtggccgccgtggtggccgttatgagagtggtggccgccgtggtggtagggaatctggtggtaggcgtggagggagaggtcctagcctagctactcc

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0031974 GO:0031981 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0070013

KEGG Pathways

Metabolic & Signaling

ko05130 map05130

Pfam Domains

Protein Families

RRM_1

Protein Analysis

115

Amino Acids

12.22

Weight (kDa)

10.31

Isoelectric Point (pI)

53.58

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008326)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G08760
fragaria_vesca	FvH4_4g36861 FvH4_4g36861 FvH4_4g36861 FvH4_4g36861 FvH4_5g39267 FvH4_5g39267 FvH4_5g39267 FvH4_5g39267 FvH4_5g39267 FvH4_5g39267
rosa_chinensis	RchiOBHm_Chr4g0446621
rosa_laevigata	RLG00000005644
rosa_multiflora	Rmu_co7993076.1_g000001 Rmu_sc0030348.1_g000001
rosa_rugosa	Rorug04G0373200 Rorug04G0373300 Rorug04G0373400
rosa_samantha	Rh4AG434600 Rh4BG443700 Rh4CG461000 Rh4DG442500
rosa_wichuraiana	Rw4G037150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	40
AciI	CCGC	3 cut(s)	79, 255, 285
AcoI	YGGCCR	7 cut(s)	152, 210, 222, 234, 252, 264, 282
AcsI	RAATTY	1 cut(s)	183
AcyI	GRCGYC	1 cut(s)	41
AfiI	CCNNNNNNNGG	1 cut(s)	50
AgsI	TTSAA	1 cut(s)	141
AluBI	AGCT	4 cut(s)	97, 105, 131, 340
AluI	AGCT	4 cut(s)	97, 105, 131, 340
AoxI	GGCC	8 cut(s)	56, 152, 210, 222, 234, 252, 264, 282
ApoI	RAATTY	1 cut(s)	183
AspLEI	GCGC	1 cut(s)	43
AspS9I	GGNCC	1 cut(s)	328
AsuHPI	GGTGA	1 cut(s)	178
AvaII	GGWCC	1 cut(s)	328
BanI	GGYRCC	1 cut(s)	40
BccI	CCATC	2 cut(s)	25, 48
BceAI	ACGGC	6 cut(s)	197, 209, 221, 242, 251, 272
BclI	TGATCA	1 cut(s)	108
BfaI	CTAG	2 cut(s)	332, 337
BfoI	RGCGCY	1 cut(s)	44
BglI	GCCNNNNNGGC	1 cut(s)	263
BisI	GCNGC	2 cut(s)	255, 285
BlsI	GCNGC	2 cut(s)	256, 286
Bme18I	GGWCC	1 cut(s)	328
BmgT120I	GGNCC	1 cut(s)	328
BmiI	GGNNCC	1 cut(s)	42
BmsI	GCATC	1 cut(s)	72
BsaHI	GRCGYC	1 cut(s)	41
BsaJI	CCNNGG	3 cut(s)	47, 258, 288
Bsc4I	CCNNNNNNNGG	1 cut(s)	50
Bse118I	RCCGGY	1 cut(s)	150
Bse1I	ACTGG	1 cut(s)	42
BseDI	CCNNGG	3 cut(s)	47, 258, 288
BseGI	GGATG	3 cut(s)	17, 59, 87
BseLI	CCNNNNNNNGG	1 cut(s)	50
BseNI	ACTGG	1 cut(s)	42
BshFI	GGCC	8 cut(s)	58, 154, 212, 224, 236, 254, 266, 284
BshNI	GGYRCC	1 cut(s)	40
BsiSI	CCGG	1 cut(s)	151
BslI	CCNNNNNNNGG	1 cut(s)	50
BsnI	GGCC	8 cut(s)	58, 154, 212, 224, 236, 254, 266, 284
Bsp143I	GATC	2 cut(s)	108, 117
BspACI	CCGC	3 cut(s)	79, 255, 285
BspANI	GGCC	8 cut(s)	58, 154, 212, 224, 236, 254, 266, 284
BspLI	GGNNCC	1 cut(s)	42
BspT107I	GGYRCC	1 cut(s)	40
BsrFI	RCCGGY	1 cut(s)	150
BsrI	ACTGG	1 cut(s)	42
BssAI	RCCGGY	1 cut(s)	150
BssECI	CCNNGG	3 cut(s)	47, 258, 288
BssMI	GATC	2 cut(s)	108, 117
BssNI	GRCGYC	1 cut(s)	41
BssT1I	CCWWGG	1 cut(s)	47
BstACI	GRCGYC	1 cut(s)	41
BstDSI	CCRYGG	2 cut(s)	258, 288
BstF5I	GGATG	3 cut(s)	17, 59, 87
BstH2I	RGCGCY	1 cut(s)	44
BstHHI	GCGC	1 cut(s)	43
BstKTI	GATC	2 cut(s)	111, 120
BstMBI	GATC	2 cut(s)	108, 117
BstMWI	GCNNNNNNNGC	1 cut(s)	263
BstXI	CCANNNNNNTGG	1 cut(s)	54
BsuRI	GGCC	8 cut(s)	58, 154, 212, 224, 236, 254, 266, 284
BtgI	CCRYGG	2 cut(s)	258, 288
BtsCI	GGATG	3 cut(s)	17, 59, 87
CfoI	GCGC	1 cut(s)	43
Cfr10I	RCCGGY	1 cut(s)	150
Cfr13I	GGNCC	1 cut(s)	328
CviAII	CATG	1 cut(s)	63
DinI	GGCGCC	1 cut(s)	42
DpnI	GATC	2 cut(s)	110, 119
DpnII	GATC	2 cut(s)	108, 117
EaeI	YGGCCR	7 cut(s)	152, 210, 222, 234, 252, 264, 282
Eco130I	CCWWGG	1 cut(s)	47
Eco47I	GGWCC	1 cut(s)	328
EcoO109I	RGGNCCY	1 cut(s)	328
EcoRI	GAATTC	1 cut(s)	183
EcoT14I	CCWWGG	1 cut(s)	47
EgeI	GGCGCC	1 cut(s)	42
EheI	GGCGCC	1 cut(s)	42
ErhI	CCWWGG	1 cut(s)	47
FaeI	CATG	1 cut(s)	66
FaiI	YATR	4 cut(s)	32, 64, 242, 272
FatI	CATG	1 cut(s)	62
FbaI	TGATCA	1 cut(s)	108
Fnu4HI	GCNGC	2 cut(s)	255, 285
FokI	GGATG	3 cut(s)	4, 66, 94
Fsp4HI	GCNGC	2 cut(s)	255, 285
FspBI	CTAG	2 cut(s)	332, 337
GlaI	GCGC	1 cut(s)	42
GluI	GCNGC	2 cut(s)	255, 285
HaeII	RGCGCY	1 cut(s)	44
HaeIII	GGCC	8 cut(s)	58, 154, 212, 224, 236, 254, 266, 284
HapII	CCGG	1 cut(s)	151
HhaI	GCGC	1 cut(s)	43
Hin1I	GRCGYC	1 cut(s)	41
Hin1II	CATG	1 cut(s)	66
Hin6I	GCGC	1 cut(s)	41
HinP1I	GCGC	1 cut(s)	41
HindIII	AAGCTT	1 cut(s)	95
HinfI	GANTC	1 cut(s)	301
HpaII	CCGG	1 cut(s)	151
HphI	GGTGA	1 cut(s)	178
Hpy99I	CGWCG	2 cut(s)	218, 230
HpyF10VI	GCNNNNNNNGC	1 cut(s)	263
Hsp92I	GRCGYC	1 cut(s)	41
Hsp92II	CATG	1 cut(s)	66
HspAI	GCGC	1 cut(s)	41
KasI	GGCGCC	1 cut(s)	40
Ksp22I	TGATCA	1 cut(s)	108
Kzo9I	GATC	2 cut(s)	108, 117
LmnI	GCTCC	1 cut(s)	102
LpnPI	CCDG	4 cut(s)	23, 164, 173, 290
LweI	GCATC	1 cut(s)	72
MaeI	CTAG	2 cut(s)	332, 337
MalI	GATC	2 cut(s)	110, 119
MboI	GATC	2 cut(s)	108, 117
MluCI	AATT	1 cut(s)	183
Mly113I	GGCGCC	1 cut(s)	41
MmeI	TCCRAC	1 cut(s)	171
MnlI	CCTC	6 cut(s)	54, 173, 211, 223, 313, 319
MspI	CCGG	1 cut(s)	151
MwoI	GCNNNNNNNGC	1 cut(s)	263
NarI	GGCGCC	1 cut(s)	41
NdeII	GATC	2 cut(s)	108, 117
NlaIII	CATG	1 cut(s)	66
NlaIV	GGNNCC	1 cut(s)	42
PcsI	WCGNNNNNNNCGW	2 cut(s)	222, 234
PfeI	GAWTC	1 cut(s)	301
PkrI	GCNGC	2 cut(s)	256, 286
PluTI	GGCGCC	1 cut(s)	44
PpuMI	RGGWCCY	1 cut(s)	328
Psp5II	RGGWCCY	1 cut(s)	328
PspN4I	GGNNCC	1 cut(s)	42
PspPI	GGNCC	1 cut(s)	328
PspPPI	RGGWCCY	1 cut(s)	328
SatI	GCNGC	2 cut(s)	255, 285
Sau3AI	GATC	2 cut(s)	108, 117
Sau96I	GGNCC	1 cut(s)	328
SetI	ASST	9 cut(s)	99, 107, 133, 162, 168, 222, 234, 330, 342
SfaNI	GCATC	1 cut(s)	72
SfoI	GGCGCC	1 cut(s)	42
SinI	GGWCC	1 cut(s)	328
Sse9I	AATT	1 cut(s)	183
SsiI	CCGC	3 cut(s)	79, 255, 285
SspDI	GGCGCC	1 cut(s)	40
SspMI	CTAG	2 cut(s)	332, 337
StyI	CCWWGG	1 cut(s)	47
TaqI	TCGA	2 cut(s)	216, 228
TasI	AATT	1 cut(s)	183
TauI	GCSGC	2 cut(s)	257, 287
TfiI	GAWTC	1 cut(s)	301
TspDTI	ATGAA	1 cut(s)	47
VpaK11BI	GGWCC	1 cut(s)	328
XapI	RAATTY	1 cut(s)	183
XspI	CTAG	2 cut(s)	332, 337

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.