Rh4AG434600

RNA recognition motif

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4A
OG0008326
Physical Location & Seq
Forward (+)
72861569 .. 72865867
4299 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4AG434600.1

Sequence Viewer

Length: 1302 bp
ATGGGCAAGTCAAGCAAGAAGTCAGCCACCAAAGTTGAAGCAGCCCCTGCTGCTGCAGTTCCAGTCTCCAAGTCTGGCAAGAAAGGCAAGAGGGAAGCCGAGAATGAAATCGAGAAGGCAGTGAGTGCGAAGAAGCAGAAGAGAGACGAGGGTGTGGTGCAGGCCATCCAGAAAAAGAAGGCCGAAGCGAAGCTGCCGCAAAAGAAGAAGAAAGAAGAGAGCAGTAGTGAGGAGGAGTCTGACACTTCTTCATCAGAGGATGAGAAGCCTGCTCCTAAAACCAAAACTGTTGTTCCTCCCAAGAAGCAGGCCATAGTTGCTAAGAGTGGTACTGCCAAGAAGGAAGAGTCCAGCAGTTCTGAATCAGAGTCTGACTCTGATGAGGATGAAAAACCTGCTACCAAAACTGGAGATGCTGCAAAAAATGGGACAGTTGCTAAGAAAGCCGAGTCTTCTGACAGTTCAGATTCATCAGAAGATGATTCTGATGAGGATGATGTTCCTAAATCCAAAGCGACAAATTTGCCTCAAGTTGTGGCTAAGAATGGCAAGAAGAAAGAGGATTCCAGCTCCTTAGATACAGATTCTAGTGATGATTCAGAGGATGATGATGAAACTCCTGCTAAGGTTACTGCACCTGTGAAGAAGGTTGTTGCTCCTGCTGCAAAGAAGCCTGATTCAAGCAGCTCTGAAGGTGATTCTGATGATGAGCCAAAGAATGCTAAACCTGCTGCTAAAAGAGCTCAACCATCAAAGAGTGAGAGTGAGAGTGAGAGTGAAAGTGACTCTGATGAAGAGCCACAAACTAAAAAACCAAAGGCCGAGGTCCCTGCTAAAGCTGCCCCAAAGGAAAGTAGTTCAGAGGAGGAGAGTGATGAGGATAGTTCAGATGAAGAATCAGAAGAAGAGGCAAAGACTCCAAAGAAAAAGGACTCTGATGTAGAGATGGTAGATGCTCAATCAAAATCCGAAAAGAAAGCTCCTAAAACCCCTGCTACTCCTGAAACATCGTCGTCTAAGACTTTGTTTGCTGGCAATTTGTCATTCAAGATTGAACAAAGAGATGTGGAAGAATTCTTCAAGGATGTTGCCGAAGTTGTTGAGGTCCGTTTCTCCTCTGATCAAGAAGGTCAGTTCAGGGGATATGGACATGTAGAGTTTGCCAGTGCAGAAGATGCCCAAAAGGCTCTGGAGTTGAATGGTTCAGATTTGTTGGGTCGTGCGGTGAGACTTGATCTGGCTCGTGAAAGGGGCGAAAGGGGTGCTTATACTCCTCACAGCGGGTATATTTTCACTCTTTAA

Protein Analysis

433

Amino Acids

46.36

Weight (kDa)

4.88

Isoelectric Point (pI)

61.41

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RRM_1 PF00076 342 - 409 3.1e-15 RNA recognition motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 403, 736
AciI CCGC 3 cut(s) 197, 1223, 1281
AcsI RAATTY 2 cut(s) 520, 1073
AcuI CTGAAG 1 cut(s) 711
AfaI GTAC 1 cut(s) 331
AfiI CCNNNNNNNGG 1 cut(s) 1280
AflIII ACRYGT 1 cut(s) 1150
AgsI TTSAA 6 cut(s) 38, 681, 1048, 1055, 1081, 1198
AluBI AGCT 6 cut(s) 193, 570, 687, 743, 839, 980
AluI AGCT 6 cut(s) 193, 570, 687, 743, 839, 980
Alw21I GWGCWC 1 cut(s) 745
Alw26I GTCTC 3 cut(s) 70, 138, 1222
AlwNI CAGNNNCTG 2 cut(s) 47, 371
AoxI GGCC 4 cut(s) 162, 180, 309, 819
ApeKI GCWGC 9 cut(s) 41, 50, 53, 193, 416, 662, 684, 731, 839
ApoI RAATTY 2 cut(s) 520, 1073
AspS9I GGNCC 2 cut(s) 826, 1105
AsuHPI GGTGA 2 cut(s) 707, 1237
AvaII GGWCC 2 cut(s) 826, 1105
BanII GRGCYC 1 cut(s) 745
BauI CACGAG 1 cut(s) 1242
BbsI GAAGAC 1 cut(s) 444
Bbv12I GWGCWC 1 cut(s) 745
BbvI GCAGC 9 cut(s) 37, 40, 53, 180, 403, 649, 696, 718, 826
BccI CCATC 3 cut(s) 173, 757, 940
BcgI CGANNNNNNTGC 6 cut(s) 505, 539, 812, 846, 1244, 1278
BclI TGATCA 1 cut(s) 1120
BcoDI GTCTC 3 cut(s) 70, 138, 1222
BfaI CTAG 1 cut(s) 588
BfmI CTRYAG 1 cut(s) 54
BfuAI ACCTGC 2 cut(s) 403, 736
BglI GCCNNNNNGGC 1 cut(s) 1184
Bme18I GGWCC 2 cut(s) 826, 1105
BmgT120I GGNCC 2 cut(s) 826, 1105
BmiI GGNNCC 1 cut(s) 828
BmsI GCATC 3 cut(s) 403, 943, 1165
BpiI GAAGAC 1 cut(s) 444
BplI GAGNNNNNCTC 2 cut(s) 359, 391
BpmI CTGGAG 2 cut(s) 429, 1211
Bpu10I CCTNAGC 1 cut(s) 624
BpuEI CTTGAG 1 cut(s) 513
BsaJI CCNNGG 1 cut(s) 822
Bsc4I CCNNNNNNNGG 1 cut(s) 1280
Bse1I ACTGG 3 cut(s) 62, 412, 1164
BseDI CCNNGG 1 cut(s) 822
BseGI GGATG 6 cut(s) 165, 265, 391, 499, 610, 1090
BseLI CCNNNNNNNGG 1 cut(s) 1280
BseNI ACTGG 3 cut(s) 62, 412, 1164
BseRI GAGGAG 6 cut(s) 245, 248, 878, 881, 1105, 1263
BseXI GCAGC 9 cut(s) 37, 40, 53, 180, 403, 649, 696, 718, 826
BsgI GTGCAG 3 cut(s) 179, 618, 1188
BshFI GGCC 4 cut(s) 164, 182, 311, 821
BsiHKAI GWGCWC 1 cut(s) 745
BslFI GGGAC 2 cut(s) 442, 812
BslI CCNNNNNNNGG 1 cut(s) 1280
BsmAI GTCTC 3 cut(s) 70, 138, 1222
BsmBI CGTCTC 1 cut(s) 138
BsmFI GGGAC 2 cut(s) 442, 812
BsmI GAATGC 1 cut(s) 724
BsnI GGCC 4 cut(s) 164, 182, 311, 821
Bsp1286I GDGCHC 1 cut(s) 745
Bsp143I GATC 2 cut(s) 1120, 1234
BspACI CCGC 3 cut(s) 197, 1223, 1281
BspANI GGCC 4 cut(s) 164, 182, 311, 821
BspLI GGNNCC 1 cut(s) 828
BspMAI CTGCAG 1 cut(s) 58
BspMI ACCTGC 2 cut(s) 403, 736
BspQI GCTCTTC 1 cut(s) 789
BsrI ACTGG 3 cut(s) 62, 412, 1164
BssECI CCNNGG 1 cut(s) 822
BssMI GATC 2 cut(s) 1120, 1234
BssSI CACGAG 1 cut(s) 1242
Bst2BI CACGAG 1 cut(s) 1242
Bst4CI ACNGT 3 cut(s) 289, 433, 461
Bst6I CTCTTC 5 cut(s) 134, 210, 339, 789, 900
BstAPI GCANNNNNTGC 3 cut(s) 47, 125, 1175
BstC8I GCNNGC 4 cut(s) 162, 270, 309, 1033
BstDEI CTNAG 6 cut(s) 321, 438, 540, 574, 624, 1017
BstF5I GGATG 6 cut(s) 165, 265, 391, 499, 610, 1090
BstKTI GATC 2 cut(s) 1123, 1237
BstMAI GTCTC 3 cut(s) 70, 138, 1222
BstMBI GATC 2 cut(s) 1120, 1234
BstNSI RCATGY 1 cut(s) 1154
BstSFI CTRYAG 1 cut(s) 54
BstV1I GCAGC 9 cut(s) 37, 40, 53, 180, 403, 649, 696, 718, 826
BstV2I GAAGAC 1 cut(s) 444
BsuRI GGCC 4 cut(s) 164, 182, 311, 821
BtsCI GGATG 6 cut(s) 165, 265, 391, 499, 610, 1090
BtsI GCAGTG 1 cut(s) 126
BtsIMutI CAGTG 2 cut(s) 126, 1171
BveI ACCTGC 2 cut(s) 403, 736
Cac8I GCNNGC 4 cut(s) 162, 270, 309, 1033
CaiI CAGNNNCTG 2 cut(s) 47, 371
Cfr13I GGNCC 2 cut(s) 826, 1105
Csp6I GTAC 1 cut(s) 330
CspCI CAANNNNNGTGG 2 cut(s) 16, 51
CviAII CATG 1 cut(s) 1151
CviQI GTAC 1 cut(s) 330
DdeI CTNAG 6 cut(s) 321, 438, 540, 574, 624, 1017
DpnI GATC 2 cut(s) 1122, 1236
DpnII GATC 2 cut(s) 1120, 1234
Eam1104I CTCTTC 5 cut(s) 134, 210, 339, 789, 900
EarI CTCTTC 5 cut(s) 134, 210, 339, 789, 900
Ecl136II GAGCTC 1 cut(s) 743
Eco24I GRGCYC 1 cut(s) 745
Eco47I GGWCC 2 cut(s) 826, 1105
Eco53kI GAGCTC 1 cut(s) 743
Eco57I CTGAAG 1 cut(s) 711
EcoICRI GAGCTC 1 cut(s) 743
EcoO109I RGGNCCY 1 cut(s) 826
EcoRI GAATTC 1 cut(s) 1073
EcoT38I GRGCYC 1 cut(s) 745
Esp3I CGTCTC 1 cut(s) 138
FaeI CATG 1 cut(s) 1154
FaiI YATR 5 cut(s) 314, 1146, 1152, 1269, 1287
FalI AAGNNNNNCTT 2 cut(s) 1249, 1281
FaqI GGGAC 2 cut(s) 442, 812
FatI CATG 1 cut(s) 1150
FauI CCCGC 1 cut(s) 1274
FbaI TGATCA 1 cut(s) 1120
FokI GGATG 6 cut(s) 152, 272, 398, 506, 617, 1097
FriOI GRGCYC 1 cut(s) 745
FspBI CTAG 1 cut(s) 588
GsuI CTGGAG 2 cut(s) 429, 1211
HaeIII GGCC 4 cut(s) 164, 182, 311, 821
Hin1II CATG 1 cut(s) 1154
HphI GGTGA 2 cut(s) 707, 1237
Hpy188III TCNNGA 7 cut(s) 112, 169, 1001, 1048, 1124, 1190, 1244
Hpy99I CGWCG 1 cut(s) 1015
HpyAV CCTTC 6 cut(s) 109, 172, 334, 640, 686, 1121
HpyCH4III ACNGT 3 cut(s) 289, 433, 461
HpyCH4V TGCA 6 cut(s) 56, 160, 419, 635, 665, 1169
HpyF3I CTNAG 6 cut(s) 321, 438, 540, 574, 624, 1017
Hsp92II CATG 1 cut(s) 1154
Ksp22I TGATCA 1 cut(s) 1120
Kzo9I GATC 2 cut(s) 1120, 1234
LguI GCTCTTC 1 cut(s) 789
LmnI GCTCC 4 cut(s) 277, 575, 661, 985
Lsp1109I GCAGC 9 cut(s) 37, 40, 53, 180, 403, 649, 696, 718, 826
LweI GCATC 3 cut(s) 403, 943, 1165
MaeI CTAG 1 cut(s) 588
MaeIII GTNAC 2 cut(s) 628, 782
MalI GATC 2 cut(s) 1122, 1236
MboI GATC 2 cut(s) 1120, 1234
MhlI GDGCHC 1 cut(s) 745
MluCI AATT 3 cut(s) 520, 1036, 1073
MlyI GAGTC 8 cut(s) 245, 356, 368, 377, 458, 779, 910, 926
MseI TTAA 1 cut(s) 1300
MspA1I CMGCKG 1 cut(s) 1281
Mva1269I GAATGC 1 cut(s) 724
NdeII GATC 2 cut(s) 1120, 1234
NlaIII CATG 1 cut(s) 1154
NlaIV GGNNCC 1 cut(s) 828
NmeAIII GCCGAG 3 cut(s) 124, 472, 847
NmuCI GTSAC 1 cut(s) 782
NspI RCATGY 1 cut(s) 1154
PciI ACATGT 1 cut(s) 1150
PciSI GCTCTTC 1 cut(s) 789
PctI GAATGC 1 cut(s) 724
PfeI GAWTC 9 cut(s) 362, 467, 482, 563, 584, 596, 677, 698, 896
PleI GAGTC 8 cut(s) 244, 355, 368, 376, 457, 779, 910, 926
PpsI GAGTC 8 cut(s) 244, 355, 368, 376, 457, 779, 910, 926
PpuMI RGGWCCY 1 cut(s) 826
PscI ACATGT 1 cut(s) 1150
Psp124BI GAGCTC 1 cut(s) 745
Psp5II RGGWCCY 1 cut(s) 826
PspN4I GGNNCC 1 cut(s) 828
PspPI GGNCC 2 cut(s) 826, 1105
PspPPI RGGWCCY 1 cut(s) 826
PstI CTGCAG 1 cut(s) 58
PstNI CAGNNNCTG 2 cut(s) 47, 371
RsaI GTAC 1 cut(s) 331
RsaNI GTAC 1 cut(s) 330
SacI GAGCTC 1 cut(s) 745
SapI GCTCTTC 1 cut(s) 789
SaqAI TTAA 1 cut(s) 1300
Sau3AI GATC 2 cut(s) 1120, 1234
Sau96I GGNCC 2 cut(s) 826, 1105
SchI GAGTC 8 cut(s) 245, 356, 368, 377, 458, 779, 910, 926
SduI GDGCHC 1 cut(s) 745
SfaNI GCATC 3 cut(s) 403, 943, 1165
SfcI CTRYAG 1 cut(s) 54
SinI GGWCC 2 cut(s) 826, 1105
SmlI CTYRAG 1 cut(s) 528
SmoI CTYRAG 1 cut(s) 528
Sse9I AATT 3 cut(s) 520, 1036, 1073
SsiI CCGC 3 cut(s) 197, 1223, 1281
SspMI CTAG 1 cut(s) 588
SstI GAGCTC 1 cut(s) 745
TaaI ACNGT 3 cut(s) 289, 433, 461
TaqI TCGA 1 cut(s) 111
TasI AATT 3 cut(s) 520, 1036, 1073
TauI GCSGC 1 cut(s) 199
TfiI GAWTC 9 cut(s) 362, 467, 482, 563, 584, 596, 677, 698, 896
Tru1I TTAA 1 cut(s) 1300
Tru9I TTAA 1 cut(s) 1300
TscAI CASTG 2 cut(s) 126, 1171
TseFI GTSAC 1 cut(s) 782
TseI GCWGC 9 cut(s) 41, 50, 53, 193, 416, 662, 684, 731, 839
Tsp45I GTSAC 1 cut(s) 782
TspDTI ATGAA 7 cut(s) 120, 240, 402, 459, 627, 807, 906
TspGWI ACGGA 1 cut(s) 1097
TspRI CASTG 2 cut(s) 126, 1171
VpaK11BI GGWCC 2 cut(s) 826, 1105
XapI RAATTY 2 cut(s) 520, 1073
XceI RCATGY 1 cut(s) 1154
XspI CTAG 1 cut(s) 588
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.