Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0030348.1

Orthogroup ID

OG0008326

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 1865

Gene Structure 1865 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0030348.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1030 bp

agctcaaccatcaaagagtgagagtgagagtgagagtgagagtgactctgatgaagagccacaaactaaaaaaccaaaggctgaggtccctgctaaagctgccccaaaggaaagtagttcagaggaggagagtgatgaggatagttcagatgaagaatcagaagaagaggcaaagactccaaagaaaaaggactctgatgtagagatggtagatgctcaatcaaaatccgaaaagaaagctcctaaaacccctactactcctgaaacatcgtcgtctaagactttgtttgccggcaatttgtcattcaagattgaacaaagagatgtggaagaattcttcaaggatgttgcccaagttgttgaggtccgtttctcctctgatcaagatggacagttcaggggatatggacatgtagagtttgccagtgcagaagatgcccaaaaggctctggagttgaatggttcagatttgttgggtcgtgcggtgagacttgatctggctcgtgaaaggggcgaaaggggtgcttatactcctcacagcggcaaagagagcaactcatatcagaagggaggacaaggtcagtcacagacaatttttgtacgaggatttgatacaaaccaaggggaggacgagatccgaggtgccctgcaaagtcattttgcttcgtgtggagagataacacgggtgtccatcccaaaagattatgaaactggcgcctccaaggggatggcctacatggacttctcatctgcggatgctttcagcaaagctttggagcttgatcaaagtgatcttggaaatagctgttatttgaatgtccaaccggccaaacctaaaggtgattttggagagaggaattctggtgttcgttttgataatggtggccgtcgaggtggccgtcgaggtggccgttatgagagtggtggccgccgtggtggtagggaatctggtggtaggcgtggagggagaggtcctagcctagctactccgggaacagggaagaagaccaccttcaatgacgaggattag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0031974 GO:0031981 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0070013

KEGG Pathways

Metabolic & Signaling

ko05130 map05130

Pfam Domains

Protein Families

RRM_1

Protein Analysis

342

Amino Acids

37.04

Weight (kDa)

5.01

Isoelectric Point (pI)

52.08

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008326)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G08760
fragaria_vesca	FvH4_4g36861 FvH4_4g36861 FvH4_4g36861 FvH4_4g36861 FvH4_5g39267 FvH4_5g39267 FvH4_5g39267 FvH4_5g39267 FvH4_5g39267 FvH4_5g39267
rosa_chinensis	RchiOBHm_Chr4g0446621
rosa_laevigata	RLG00000005644
rosa_multiflora	Rmu_co7993076.1_g000001 Rmu_sc0030348.1_g000001
rosa_rugosa	Rorug04G0373200 Rorug04G0373300 Rorug04G0373400
rosa_samantha	Rh4AG434600 Rh4BG443700 Rh4CG461000 Rh4DG442500
rosa_wichuraiana	Rw4G037150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	642, 714
AciI	CCGC	4 cut(s)	483, 541, 753, 929
AclWI	GGATC	1 cut(s)	629
AcoI	YGGCCR	5 cut(s)	826, 884, 896, 908, 926
AcsI	RAATTY	2 cut(s)	333, 857
AcyI	GRCGYC	1 cut(s)	715
AfaI	GTAC	1 cut(s)	601
AfiI	CCNNNNNNNGG	4 cut(s)	540, 626, 724, 996
AflIII	ACRYGT	1 cut(s)	410
AgsI	TTSAA	6 cut(s)	308, 315, 341, 458, 815, 1016
AluBI	AGCT	7 cut(s)	3, 99, 240, 771, 779, 805, 984
AluI	AGCT	7 cut(s)	3, 99, 240, 771, 779, 805, 984
Alw26I	GTCTC	1 cut(s)	482
AlwI	GGATC	1 cut(s)	629
AoxI	GGCC	6 cut(s)	730, 826, 884, 896, 908, 926
ApeKI	GCWGC	1 cut(s)	99
ApoI	RAATTY	2 cut(s)	333, 857
AspLEI	GCGC	1 cut(s)	717
AspS9I	GGNCC	3 cut(s)	86, 365, 972
AsuC2I	CCSGG	1 cut(s)	991
AsuHPI	GGTGA	2 cut(s)	497, 852
AvaII	GGWCC	3 cut(s)	86, 365, 972
BaeGI	GKGCMC	1 cut(s)	647
BanI	GGYRCC	2 cut(s)	642, 714
BauI	CACGAG	1 cut(s)	502
BbsI	GAAGAC	1 cut(s)	1011
BbvCI	CCTCAGC	1 cut(s)	82
BbvI	GCAGC	1 cut(s)	86
BccI	CCATC	5 cut(s)	17, 200, 381, 699, 722
BceAI	ACGGC	4 cut(s)	871, 883, 895, 916
BcgI	CGANNNNNNTGC	2 cut(s)	504, 538
BclI	TGATCA	2 cut(s)	380, 782
BcnI	CCSGG	1 cut(s)	991
BcoDI	GTCTC	1 cut(s)	482
BfaI	CTAG	2 cut(s)	976, 981
BfoI	RGCGCY	1 cut(s)	718
BglI	GCCNNNNNGGC	1 cut(s)	444
BisI	GCNGC	3 cut(s)	100, 542, 929
BlsI	GCNGC	3 cut(s)	101, 543, 930
Bme1390I	CCNGG	1 cut(s)	991
Bme18I	GGWCC	3 cut(s)	86, 365, 972
BmgT120I	GGNCC	3 cut(s)	86, 365, 972
BmiI	GGNNCC	3 cut(s)	88, 644, 716
BmrFI	CCNGG	1 cut(s)	991
BmsI	GCATC	3 cut(s)	203, 425, 746
BpiI	GAAGAC	1 cut(s)	1011
BplI	GAGNNNNNCTC	4 cut(s)	30, 62, 540, 572
BpmI	CTGGAG	1 cut(s)	471
Bpu10I	CCTNAGC	1 cut(s)	82
BpuMI	CCSGG	1 cut(s)	991
BsaHI	GRCGYC	1 cut(s)	715
BsaJI	CCNNGG	4 cut(s)	620, 638, 721, 932
Bsc4I	CCNNNNNNNGG	4 cut(s)	540, 626, 724, 996
Bse118I	RCCGGY	2 cut(s)	291, 824
Bse1I	ACTGG	2 cut(s)	424, 716
BseDI	CCNNGG	4 cut(s)	620, 638, 721, 932
BseGI	GGATG	4 cut(s)	350, 691, 733, 761
BseLI	CCNNNNNNNGG	4 cut(s)	540, 626, 724, 996
BseMII	CTCAG	1 cut(s)	73
BseNI	ACTGG	2 cut(s)	424, 716
BseRI	GAGGAG	4 cut(s)	138, 141, 365, 523
BseSI	GKGCMC	1 cut(s)	647
BseXI	GCAGC	1 cut(s)	86
BsgI	GTGCAG	1 cut(s)	448
BshFI	GGCC	6 cut(s)	732, 828, 886, 898, 910, 928
BshNI	GGYRCC	2 cut(s)	642, 714
BsiSI	CCGG	3 cut(s)	292, 825, 990
BslFI	GGGAC	1 cut(s)	72
BslI	CCNNNNNNNGG	4 cut(s)	540, 626, 724, 996
BsmAI	GTCTC	1 cut(s)	482
BsmFI	GGGAC	1 cut(s)	72
BsnI	GGCC	6 cut(s)	732, 828, 886, 898, 910, 928
Bsp1286I	GDGCHC	1 cut(s)	647
Bsp143I	GATC	5 cut(s)	380, 494, 634, 782, 791
BspACI	CCGC	4 cut(s)	483, 541, 753, 929
BspANI	GGCC	6 cut(s)	732, 828, 886, 898, 910, 928
BspCNI	CTCAG	1 cut(s)	74
BspLI	GGNNCC	3 cut(s)	88, 644, 716
BspPI	GGATC	1 cut(s)	629
BspQI	GCTCTTC	1 cut(s)	49
BspT107I	GGYRCC	2 cut(s)	642, 714
BsrFI	RCCGGY	2 cut(s)	291, 824
BsrI	ACTGG	2 cut(s)	424, 716
BssAI	RCCGGY	2 cut(s)	291, 824
BssECI	CCNNGG	4 cut(s)	620, 638, 721, 932
BssMI	GATC	5 cut(s)	380, 494, 634, 782, 791
BssNI	GRCGYC	1 cut(s)	715
BssSI	CACGAG	1 cut(s)	502
BssT1I	CCWWGG	2 cut(s)	620, 721
Bst2BI	CACGAG	1 cut(s)	502
Bst4CI	ACNGT	1 cut(s)	394
Bst6I	CTCTTC	2 cut(s)	49, 160
BstACI	GRCGYC	1 cut(s)	715
BstAPI	GCANNNNNTGC	1 cut(s)	435
BstC8I	GCNNGC	1 cut(s)	293
BstDEI	CTNAG	2 cut(s)	82, 277
BstDSI	CCRYGG	1 cut(s)	932
BstF5I	GGATG	4 cut(s)	350, 691, 733, 761
BstH2I	RGCGCY	1 cut(s)	718
BstHHI	GCGC	1 cut(s)	717
BstKTI	GATC	5 cut(s)	383, 497, 637, 785, 794
BstMAI	GTCTC	1 cut(s)	482
BstMBI	GATC	5 cut(s)	380, 494, 634, 782, 791
BstMWI	GCNNNNNNNGC	4 cut(s)	99, 435, 444, 550
BstNSI	RCATGY	1 cut(s)	414
BstSCI	CCNGG	1 cut(s)	989
BstSLI	GKGCMC	1 cut(s)	647
BstV1I	GCAGC	1 cut(s)	86
BstV2I	GAAGAC	1 cut(s)	1011
BstX2I	RGATCY	1 cut(s)	634
BstXI	CCANNNNNNTGG	1 cut(s)	728
BstYI	RGATCY	1 cut(s)	634
BsuRI	GGCC	6 cut(s)	732, 828, 886, 898, 910, 928
BtgI	CCRYGG	1 cut(s)	932
BtsCI	GGATG	4 cut(s)	350, 691, 733, 761
BtsIMutI	CAGTG	1 cut(s)	431
Cac8I	GCNNGC	1 cut(s)	293
CfoI	GCGC	1 cut(s)	717
Cfr10I	RCCGGY	2 cut(s)	291, 824
Cfr13I	GGNCC	3 cut(s)	86, 365, 972
Csp6I	GTAC	1 cut(s)	600
CviAII	CATG	2 cut(s)	411, 737
CviQI	GTAC	1 cut(s)	600
DdeI	CTNAG	2 cut(s)	82, 277
DinI	GGCGCC	1 cut(s)	716
DpnI	GATC	5 cut(s)	382, 496, 636, 784, 793
DpnII	GATC	5 cut(s)	380, 494, 634, 782, 791
EaeI	YGGCCR	5 cut(s)	826, 884, 896, 908, 926
Eam1104I	CTCTTC	2 cut(s)	49, 160
EarI	CTCTTC	2 cut(s)	49, 160
Eco130I	CCWWGG	2 cut(s)	620, 721
Eco47I	GGWCC	3 cut(s)	86, 365, 972
EcoO109I	RGGNCCY	2 cut(s)	86, 972
EcoRI	GAATTC	2 cut(s)	333, 857
EcoT14I	CCWWGG	2 cut(s)	620, 721
EgeI	GGCGCC	1 cut(s)	716
EheI	GGCGCC	1 cut(s)	716
ErhI	CCWWGG	2 cut(s)	620, 721
FaeI	CATG	2 cut(s)	414, 740
FaiI	YATR	7 cut(s)	406, 412, 529, 560, 706, 738, 916
FalI	AAGNNNNNCTT	4 cut(s)	509, 541, 996, 1028
FaqI	GGGAC	1 cut(s)	72
FatI	CATG	2 cut(s)	410, 736
FbaI	TGATCA	2 cut(s)	380, 782
Fnu4HI	GCNGC	3 cut(s)	100, 542, 929
FokI	GGATG	4 cut(s)	357, 678, 740, 768
Fsp4HI	GCNGC	3 cut(s)	100, 542, 929
FspBI	CTAG	2 cut(s)	976, 981
GlaI	GCGC	1 cut(s)	716
GluI	GCNGC	3 cut(s)	100, 542, 929
GsuI	CTGGAG	1 cut(s)	471
HaeII	RGCGCY	1 cut(s)	718
HaeIII	GGCC	6 cut(s)	732, 828, 886, 898, 910, 928
HapII	CCGG	3 cut(s)	292, 825, 990
HhaI	GCGC	1 cut(s)	717
Hin1I	GRCGYC	1 cut(s)	715
Hin1II	CATG	2 cut(s)	414, 740
Hin6I	GCGC	1 cut(s)	715
HinP1I	GCGC	1 cut(s)	715
HindIII	AAGCTT	1 cut(s)	769
HinfI	GANTC	5 cut(s)	45, 156, 176, 192, 945
HpaII	CCGG	3 cut(s)	292, 825, 990
HphI	GGTGA	2 cut(s)	497, 852
Hpy188III	TCNNGA	5 cut(s)	261, 308, 384, 450, 504
Hpy99I	CGWCG	3 cut(s)	275, 892, 904
HpyAV	CCTTC	2 cut(s)	560, 1022
HpyCH4III	ACNGT	1 cut(s)	394
HpyCH4V	TGCA	2 cut(s)	429, 650
HpyF10VI	GCNNNNNNNGC	4 cut(s)	99, 435, 444, 550
HpyF3I	CTNAG	2 cut(s)	82, 277
Hsp92I	GRCGYC	1 cut(s)	715
Hsp92II	CATG	2 cut(s)	414, 740
HspAI	GCGC	1 cut(s)	715
KasI	GGCGCC	1 cut(s)	714
KroI	GCCGGC	1 cut(s)	291
KroNI	GCCGGC	1 cut(s)	293
Ksp22I	TGATCA	2 cut(s)	380, 782
Kzo9I	GATC	5 cut(s)	380, 494, 634, 782, 791
LguI	GCTCTTC	1 cut(s)	49
LmnI	GCTCC	2 cut(s)	245, 776
Lsp1109I	GCAGC	1 cut(s)	86
LweI	GCATC	3 cut(s)	203, 425, 746
MaeI	CTAG	2 cut(s)	976, 981
MaeIII	GTNAC	2 cut(s)	42, 583
MalI	GATC	5 cut(s)	382, 496, 636, 784, 793
MboI	GATC	5 cut(s)	380, 494, 634, 782, 791
MboII	GAAGA	9 cut(s)	66, 165, 174, 177, 329, 342, 444, 1013, 1016
MflI	RGATCY	1 cut(s)	634
MhlI	GDGCHC	1 cut(s)	647
MluCI	AATT	4 cut(s)	296, 333, 592, 857
Mly113I	GGCGCC	1 cut(s)	715
MlyI	GAGTC	3 cut(s)	39, 170, 186
MmeI	TCCRAC	1 cut(s)	845
MroNI	GCCGGC	1 cut(s)	291
MspA1I	CMGCKG	1 cut(s)	541
MspI	CCGG	3 cut(s)	292, 825, 990
MspR9I	CCNGG	1 cut(s)	991
MwoI	GCNNNNNNNGC	4 cut(s)	99, 435, 444, 550
NaeI	GCCGGC	1 cut(s)	293
NarI	GGCGCC	1 cut(s)	715
NciI	CCSGG	1 cut(s)	991
NdeII	GATC	5 cut(s)	380, 494, 634, 782, 791
NgoMIV	GCCGGC	1 cut(s)	291
NlaIII	CATG	2 cut(s)	414, 740
NlaIV	GGNNCC	3 cut(s)	88, 644, 716
NmuCI	GTSAC	2 cut(s)	42, 583
NspI	RCATGY	1 cut(s)	414
PciI	ACATGT	1 cut(s)	410
PciSI	GCTCTTC	1 cut(s)	49
PcsI	WCGNNNNNNNCGW	2 cut(s)	896, 908
PdiI	GCCGGC	1 cut(s)	293
PfeI	GAWTC	2 cut(s)	156, 945
PflFI	GACNNNGTC	1 cut(s)	577
PfoI	TCCNGGA	1 cut(s)	989
PkrI	GCNGC	3 cut(s)	101, 543, 930
PleI	GAGTC	3 cut(s)	39, 170, 186
PluTI	GGCGCC	1 cut(s)	718
PpsI	GAGTC	3 cut(s)	39, 170, 186
PpuMI	RGGWCCY	2 cut(s)	86, 972
PscI	ACATGT	1 cut(s)	410
Psp5II	RGGWCCY	2 cut(s)	86, 972
PspN4I	GGNNCC	3 cut(s)	88, 644, 716
PspPI	GGNCC	3 cut(s)	86, 365, 972
PspPPI	RGGWCCY	2 cut(s)	86, 972
PsuI	RGATCY	1 cut(s)	634
PsyI	GACNNNGTC	1 cut(s)	577
RsaI	GTAC	1 cut(s)	601
RsaNI	GTAC	1 cut(s)	600
SapI	GCTCTTC	1 cut(s)	49
SatI	GCNGC	3 cut(s)	100, 542, 929
Sau3AI	GATC	5 cut(s)	380, 494, 634, 782, 791
Sau96I	GGNCC	3 cut(s)	86, 365, 972
SchI	GAGTC	3 cut(s)	39, 170, 186
ScrFI	CCNGG	1 cut(s)	991
SduI	GDGCHC	1 cut(s)	647
SfaNI	GCATC	3 cut(s)	203, 425, 746
SfoI	GGCGCC	1 cut(s)	716
SinI	GGWCC	3 cut(s)	86, 365, 972
Sse9I	AATT	4 cut(s)	296, 333, 592, 857
SsiI	CCGC	4 cut(s)	483, 541, 753, 929
SspDI	GGCGCC	1 cut(s)	714
SspMI	CTAG	2 cut(s)	976, 981
StyD4I	CCNGG	1 cut(s)	989
StyI	CCWWGG	2 cut(s)	620, 721
TaaI	ACNGT	1 cut(s)	394
TaqI	TCGA	2 cut(s)	890, 902
TasI	AATT	4 cut(s)	296, 333, 592, 857
TauI	GCSGC	2 cut(s)	544, 931
TfiI	GAWTC	2 cut(s)	156, 945
TscAI	CASTG	1 cut(s)	431
TseFI	GTSAC	2 cut(s)	42, 583
TseI	GCWGC	1 cut(s)	99
Tsp45I	GTSAC	2 cut(s)	42, 583
TspDTI	ATGAA	3 cut(s)	67, 166, 721
TspGWI	ACGGA	1 cut(s)	357
TspRI	CASTG	1 cut(s)	431
Tth111I	GACNNNGTC	1 cut(s)	577
VpaK11BI	GGWCC	3 cut(s)	86, 365, 972
XapI	RAATTY	2 cut(s)	333, 857
XceI	RCATGY	1 cut(s)	414
XspI	CTAG	2 cut(s)	976, 981

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.