Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0008326

Physical Location & Seq

Genomic Coordinates Forward (+)

33599055 .. 33603700

Gene Structure 4646 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g36861.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1797 bp

ATGGGCAAGTCAAGCAAGAAGTCAGCCACCAAGGTTGAGGCAGCTCCCGCTGCTGTAGTCCCAGTCTCCAAGTCTGGAAAGAAAGGAGGCAAGAGGGAAGCCGAGAATGTAATTGAGAAGGCGGTGAGTGCGAAGAAGCAGAAGAAGGATGTGGCCGTTGTTCAGGCCATTCAGAAGACTAAGGCTGAAGCCAAGACGCAAAAGAAGAAGAAAGAGGAGAGCAGCAGCGAGGATGAGTCTGACAGTTCTTCAGAGGATGAGAAGCCTGCTCCCAAAACCAAGACTGTTGTTCCTCCTAAAAAGCCAGCCATAGCTGCTAAAAAGGAAGAGTCCAGCAGTTCTGAATCCTCTTCAGATTCTGATGAAGATGAAAAACCTGCTGCCAAAACTGGAGTTCCTACCAATGGGAAAAAAGCCGAGTCTTCTGAAAGTTCAGAATCTTCTGATGATGATTCTGACGAGGAGGAAGTTCCTAAAGCAAAAGCACCCACAAAGTTGCCACAAGTTGCTGCTAAGAATGGCAAGAAGAAAGATGATTCAAGTTCCTCAGAATCAAGTGATGATTCAGAGGATGATGAGGAAACTCCTGCTAAGGTTACTGCACTTGCAAAGAAGGTTGCTGCTCCTGCTGCAAAGAAGCCAGATTCAAGCAGCTCTGAAGATAGTGATTCTGATGATGAGCAGGATACCAGTGACGACTCGTCTGATGATTCAGAGGAAGAAAAGCCAAAGAATGCTAAACCTGCTGCTGAAGCAGCTCAACCTTCAAAGAGTGAAAGTGAAAGTGAAAGTGAAAGCGACTCTGATGAAGAAGATGATGATGATAAGCCGCAAACTAAAAAGGTCCCTGCCAAAGCTGCTAAAAAGGAAAGTAGTTCAGACGAGGATGAGGAAAGTTCAGATGAAGAATCTGAGGAAGATGTGAAGACTCCAAAGAAAAAGGACTCGGATGTAGAGATGGTAGATGCTCAATCAAAATCTGAAAAGAAAGCTCCTAAAACCCCTGCTACCCCAGAAACGTCGGGTTCTAAGACTTTGTTTGCTGGCAATTTGTCATACAATATTGAGCAGAAAGATGTGGTGGAGTTCTTCAAGAATGTCGGCCAAGTTGTTGATGTCCGGCTCTCCTCTGATGCTGATGGAAATTTCAAGGGATATGGACACGTAGAGTTTGCCACTGCTGAAGAAGCCCAAAAGGCTGTGGGTTTGAATGGTTCTGATTTGTTTGGTCGTCCGATCAGGCTTGATCTGGCTCGTGAAAGGGGTGAAAGGGGTGCATATACTCCTCATAGCGGCAAAGAGGGCAACTCTTATCAGAGAGGAGGACAGGGTCAGTCACAGACAATATTTGTACGAGGATTTGACACAACACAGGGGGAGGACGAGATTCGAAGTGCCTTGCAAAGTCATTTTGGGTCTTGTGGTGACATCACACGGGTGTCCATCCCGAAAGATTATGACACTGGCGCCCCCAAAGGGATGGCTTACATGGACTTCACAGATGCTGATGCTCTCAACAAAGCCTTGGAGTTTGATAATTCTGATCTCGGAAACGGCTGTTATTTGAGTGTCCAACCTGCCAAACCTAGAGGTGATTTTACCAGTGAGAGACCTGGTGGTGGTCGTCGAGGTGGTGGTCGATTTGACAGTGGTGGTCGTCGAGGTGGTGGTCGATTTGACAGTGGCGGCCGTCGTGGTGGTAGGGATTCTGGTGGTAGGCGTGGAGGCAGAGGAGGCAGAGGCCCTAGCCTCGCTACCCCTGGAACAGGGAAGAAGACCACCTTCAATGACGAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0031974 GO:0031981 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0070013

KEGG Pathways

Metabolic & Signaling

ko05130 map05130

Pfam Domains

Protein Families

RRM_1

Protein Analysis

599

Amino Acids

63.31

Weight (kDa)

4.97

Isoelectric Point (pI)

58.96

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRM_1	PF00076	345 - 413	1.2e-16	RNA recognition motif
RRM_1	PF00076	448 - 517	5e-09	RNA recognition motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008326)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G08760
fragaria_vesca	FvH4_4g36861 FvH4_4g36861 FvH4_4g36861 FvH4_4g36861 FvH4_5g39267 FvH4_5g39267 FvH4_5g39267 FvH4_5g39267 FvH4_5g39267 FvH4_5g39267
rosa_chinensis	RchiOBHm_Chr4g0446621
rosa_laevigata	RLG00000005644
rosa_multiflora	Rmu_co7993076.1_g000001 Rmu_sc0030348.1_g000001
rosa_rugosa	Rorug04G0373200 Rorug04G0373300 Rorug04G0373400
rosa_samantha	Rh4AG434600 Rh4BG443700 Rh4CG461000 Rh4DG442500
rosa_wichuraiana	Rw4G037150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	3 cut(s)	385, 751, 1585
AccB1I	GGYRCC	1 cut(s)	1466
AciI	CCGC	5 cut(s)	48, 122, 830, 1293, 1686
AcoI	YGGCCR	3 cut(s)	153, 1102, 1687
AcsI	RAATTY	1 cut(s)	1144
AcuI	CTGAAG	6 cut(s)	207, 234, 336, 678, 771, 1203
AcyI	GRCGYC	1 cut(s)	1467
AfaI	GTAC	1 cut(s)	1353
AfiI	CCNNNNNNNGG	5 cut(s)	404, 1292, 1476, 1619, 1766
AflIII	ACRYGT	1 cut(s)	1162
AgsI	TTSAA	7 cut(s)	540, 648, 768, 1093, 1150, 1210, 1786
AhdI	GACNNNNNGTC	1 cut(s)	700
AjnI	CCWGG	2 cut(s)	1612, 1759
AleI	CACNNNNGTG	1 cut(s)	1436
AluBI	AGCT	6 cut(s)	44, 314, 654, 758, 857, 992
AluI	AGCT	6 cut(s)	44, 314, 654, 758, 857, 992
Alw26I	GTCTC	2 cut(s)	70, 1603
AlwNI	CAGNNNCTG	2 cut(s)	359, 1505
AoxI	GGCC	5 cut(s)	153, 165, 1102, 1687, 1741
ApoI	RAATTY	1 cut(s)	1144
AspLEI	GCGC	1 cut(s)	1469
AspS9I	GGNCC	2 cut(s)	844, 1742
AsuHPI	GGTGA	4 cut(s)	136, 1277, 1436, 1604
AsuII	TTCGAA	1 cut(s)	1390
AvaII	GGWCC	1 cut(s)	844
BanI	GGYRCC	1 cut(s)	1466
BauI	CACGAG	1 cut(s)	1254
BbsI	GAAGAC	4 cut(s)	182, 414, 932, 1781
BccI	CCATC	4 cut(s)	952, 1133, 1451, 1474
BceAI	ACGGC	3 cut(s)	140, 1570, 1674
BciT130I	CCWGG	2 cut(s)	1614, 1761
BciVI	GTATCC	1 cut(s)	679
BcoDI	GTCTC	2 cut(s)	70, 1603
BfaI	CTAG	2 cut(s)	1587, 1746
BfmI	CTRYAG	1 cut(s)	54
BfoI	RGCGCY	1 cut(s)	1470
BfuAI	ACCTGC	3 cut(s)	385, 751, 1585
BfuI	GTATCC	1 cut(s)	679
BglI	GCCNNNNNGGC	1 cut(s)	1196
Bme1390I	CCNGG	2 cut(s)	1614, 1761
Bme18I	GGWCC	1 cut(s)	844
BmeRI	GACNNNNNGTC	1 cut(s)	700
BmgT120I	GGNCC	2 cut(s)	844, 1742
BmiI	GGNNCC	2 cut(s)	846, 1468
BmrFI	CCNGG	2 cut(s)	1614, 1761
BmrI	ACTGGG	1 cut(s)	56
BmsI	GCATC	4 cut(s)	955, 1123, 1492, 1498
BmuI	ACTGGG	1 cut(s)	56
BpiI	GAAGAC	4 cut(s)	182, 414, 932, 1781
BplI	GAGNNNNNCTC	2 cut(s)	1292, 1324
BpmI	CTGGAG	1 cut(s)	411
Bpu10I	CCTNAGC	1 cut(s)	591
Bpu14I	TTCGAA	1 cut(s)	1390
BsaAI	YACGTR	1 cut(s)	1165
BsaHI	GRCGYC	1 cut(s)	1467
BsaI	GGTCTC	1 cut(s)	1603
BsaJI	CCNNGG	3 cut(s)	30, 1524, 1759
Bsc4I	CCNNNNNNNGG	5 cut(s)	404, 1292, 1476, 1619, 1766
Bse1I	ACTGG	5 cut(s)	62, 394, 690, 1468, 1602
BseBI	CCWGG	2 cut(s)	1614, 1761
BseDI	CCNNGG	3 cut(s)	30, 1524, 1759
BseGI	GGATG	8 cut(s)	154, 238, 262, 577, 892, 955, 1443, 1485
BseLI	CCNNNNNNNGG	5 cut(s)	404, 1292, 1476, 1619, 1766
BseMII	CTCAG	2 cut(s)	561, 903
BseNI	ACTGG	5 cut(s)	62, 394, 690, 1468, 1602
BseRI	GAGGAG	6 cut(s)	230, 476, 1117, 1275, 1335, 1746
BseX3I	CGGCCG	1 cut(s)	1687
BsgI	GTGCAG	1 cut(s)	585
Bsh1285I	CGRYCG	1 cut(s)	1690
BshFI	GGCC	5 cut(s)	155, 167, 1104, 1689, 1743
BshNI	GGYRCC	1 cut(s)	1466
BsiEI	CGRYCG	1 cut(s)	1690
BsiSI	CCGG	1 cut(s)	1120
BslFI	GGGAC	2 cut(s)	44, 830
BslI	CCNNNNNNNGG	5 cut(s)	404, 1292, 1476, 1619, 1766
BsmAI	GTCTC	2 cut(s)	70, 1603
BsmFI	GGGAC	2 cut(s)	44, 830
BsmI	GAATGC	1 cut(s)	739
BsnI	GGCC	5 cut(s)	155, 167, 1104, 1689, 1743
Bso31I	GGTCTC	1 cut(s)	1603
Bsp119I	TTCGAA	1 cut(s)	1390
Bsp143I	GATC	3 cut(s)	1236, 1246, 1543
BspACI	CCGC	5 cut(s)	48, 122, 830, 1293, 1686
BspANI	GGCC	5 cut(s)	155, 167, 1104, 1689, 1743
BspCNI	CTCAG	2 cut(s)	560, 904
BspLI	GGNNCC	2 cut(s)	846, 1468
BspMI	ACCTGC	3 cut(s)	385, 751, 1585
BspT104I	TTCGAA	1 cut(s)	1390
BspT107I	GGYRCC	1 cut(s)	1466
BspTNI	GGTCTC	1 cut(s)	1603
BsrI	ACTGG	5 cut(s)	62, 394, 690, 1468, 1602
BssECI	CCNNGG	3 cut(s)	30, 1524, 1759
BssMI	GATC	3 cut(s)	1236, 1246, 1543
BssNI	GRCGYC	1 cut(s)	1467
BssSI	CACGAG	1 cut(s)	1254
BssT1I	CCWWGG	2 cut(s)	30, 1524
Bst2BI	CACGAG	1 cut(s)	1254
Bst2UI	CCWGG	2 cut(s)	1614, 1761
Bst4CI	ACNGT	4 cut(s)	245, 286, 1649, 1682
Bst6I	CTCTTC	2 cut(s)	321, 355
BstACI	GRCGYC	1 cut(s)	1467
BstBAI	YACGTR	1 cut(s)	1165
BstBI	TTCGAA	1 cut(s)	1390
BstC8I	GCNNGC	3 cut(s)	267, 306, 1045
BstDEI	CTNAG	6 cut(s)	180, 513, 547, 591, 912, 1029
BstENI	CCTNNNNNAGG	1 cut(s)	1764
BstF5I	GGATG	8 cut(s)	154, 238, 262, 577, 892, 955, 1443, 1485
BstH2I	RGCGCY	1 cut(s)	1470
BstHHI	GCGC	1 cut(s)	1469
BstKTI	GATC	3 cut(s)	1239, 1249, 1546
BstMAI	GTCTC	2 cut(s)	70, 1603
BstMBI	GATC	3 cut(s)	1236, 1246, 1543
BstMCI	CGRYCG	1 cut(s)	1690
BstNI	CCWGG	2 cut(s)	1614, 1761
BstSCI	CCNGG	2 cut(s)	1612, 1759
BstSFI	CTRYAG	1 cut(s)	54
BstV2I	GAAGAC	4 cut(s)	182, 414, 932, 1781
BstXI	CCANNNNNNTGG	1 cut(s)	1480
BstZI	CGGCCG	1 cut(s)	1687
BsuI	GTATCC	1 cut(s)	679
BsuRI	GGCC	5 cut(s)	155, 167, 1104, 1689, 1743
BtsCI	GGATG	8 cut(s)	154, 238, 262, 577, 892, 955, 1443, 1485
BtsI	GCAGTG	1 cut(s)	1176
BtsIMutI	CAGTG	6 cut(s)	697, 1176, 1461, 1609, 1654, 1687
BveI	ACCTGC	3 cut(s)	385, 751, 1585
Cac8I	GCNNGC	3 cut(s)	267, 306, 1045
CaiI	CAGNNNCTG	2 cut(s)	359, 1505
CfoI	GCGC	1 cut(s)	1469
Cfr13I	GGNCC	2 cut(s)	844, 1742
CseI	GACGC	1 cut(s)	205
CsiI	ACCWGGT	1 cut(s)	1612
Csp6I	GTAC	1 cut(s)	1352
CspCI	CAANNNNNGTGG	2 cut(s)	16, 51
CviAII	CATG	1 cut(s)	1489
CviQI	GTAC	1 cut(s)	1352
DdeI	CTNAG	6 cut(s)	180, 513, 547, 591, 912, 1029
DinI	GGCGCC	1 cut(s)	1468
DpnI	GATC	3 cut(s)	1238, 1248, 1545
DpnII	GATC	3 cut(s)	1236, 1246, 1543
DriI	GACNNNNNGTC	1 cut(s)	700
EaeI	YGGCCR	3 cut(s)	153, 1102, 1687
EagI	CGGCCG	1 cut(s)	1687
Eam1104I	CTCTTC	2 cut(s)	321, 355
Eam1105I	GACNNNNNGTC	1 cut(s)	700
EarI	CTCTTC	2 cut(s)	321, 355
EclXI	CGGCCG	1 cut(s)	1687
Eco130I	CCWWGG	2 cut(s)	30, 1524
Eco31I	GGTCTC	1 cut(s)	1603
Eco47I	GGWCC	1 cut(s)	844
Eco52I	CGGCCG	1 cut(s)	1687
Eco57I	CTGAAG	6 cut(s)	207, 234, 336, 678, 771, 1203
EcoNI	CCTNNNNNAGG	1 cut(s)	1764
EcoO109I	RGGNCCY	2 cut(s)	844, 1742
EcoRII	CCWGG	2 cut(s)	1612, 1759
EcoT14I	CCWWGG	2 cut(s)	30, 1524
EgeI	GGCGCC	1 cut(s)	1468
EheI	GGCGCC	1 cut(s)	1468
ErhI	CCWWGG	2 cut(s)	30, 1524
FaeI	CATG	1 cut(s)	1492
FaiI	YATR	8 cut(s)	311, 1057, 1158, 1279, 1281, 1290, 1458, 1490
FalI	AAGNNNNNCTT	1 cut(s)	1766
FaqI	GGGAC	2 cut(s)	44, 830
FatI	CATG	1 cut(s)	1488
FauI	CCCGC	1 cut(s)	55
FokI	GGATG	8 cut(s)	161, 245, 269, 584, 899, 962, 1430, 1492
FspBI	CTAG	2 cut(s)	1587, 1746
GlaI	GCGC	1 cut(s)	1468
GsuI	CTGGAG	1 cut(s)	411
HaeII	RGCGCY	1 cut(s)	1470
HaeIII	GGCC	5 cut(s)	155, 167, 1104, 1689, 1743
HapII	CCGG	1 cut(s)	1120
HgaI	GACGC	1 cut(s)	205
HhaI	GCGC	1 cut(s)	1469
Hin1I	GRCGYC	1 cut(s)	1467
Hin1II	CATG	1 cut(s)	1492
Hin6I	GCGC	1 cut(s)	1467
HinP1I	GCGC	1 cut(s)	1467
HpaII	CCGG	1 cut(s)	1120
HphI	GGTGA	4 cut(s)	136, 1277, 1436, 1604
Hpy188III	TCNNGA	4 cut(s)	75, 1093, 1256, 1447
Hpy99I	CGWCG	4 cut(s)	1024, 1629, 1662, 1695
HpyAV	CCTTC	5 cut(s)	112, 139, 607, 774, 1792
HpyCH4III	ACNGT	4 cut(s)	245, 286, 1649, 1682
HpyCH4IV	ACGT	2 cut(s)	1019, 1164
HpyCH4V	TGCA	5 cut(s)	602, 608, 632, 1277, 1402
HpyF3I	CTNAG	6 cut(s)	180, 513, 547, 591, 912, 1029
HpySE526I	ACGT	2 cut(s)	1019, 1164
Hsp92I	GRCGYC	1 cut(s)	1467
Hsp92II	CATG	1 cut(s)	1492
HspAI	GCGC	1 cut(s)	1467
KasI	GGCGCC	1 cut(s)	1466
Kzo9I	GATC	3 cut(s)	1236, 1246, 1543
LmnI	GCTCC	4 cut(s)	49, 274, 628, 997
LweI	GCATC	4 cut(s)	955, 1123, 1492, 1498
MabI	ACCWGGT	1 cut(s)	1612
MaeI	CTAG	2 cut(s)	1587, 1746
MaeII	ACGT	2 cut(s)	1019, 1164
MaeIII	GTNAC	4 cut(s)	595, 692, 1335, 1424
MalI	GATC	3 cut(s)	1238, 1248, 1545
MboI	GATC	3 cut(s)	1236, 1246, 1543
MluCI	AATT	4 cut(s)	111, 1048, 1144, 1537
Mly113I	GGCGCC	1 cut(s)	1467
MlyI	GAGTC	7 cut(s)	245, 338, 428, 692, 794, 922, 938
MmeI	TCCRAC	1 cut(s)	1597
MslI	CAYNNNNRTG	1 cut(s)	1436
MspA1I	CMGCKG	1 cut(s)	50
MspI	CCGG	1 cut(s)	1120
MspR9I	CCNGG	2 cut(s)	1614, 1761
Mva1269I	GAATGC	1 cut(s)	739
MvaI	CCWGG	2 cut(s)	1614, 1761
NarI	GGCGCC	1 cut(s)	1467
NdeII	GATC	3 cut(s)	1236, 1246, 1543
NlaIII	CATG	1 cut(s)	1492
NlaIV	GGNNCC	2 cut(s)	846, 1468
NmeAIII	GCCGAG	2 cut(s)	127, 442
NmuCI	GTSAC	3 cut(s)	692, 1335, 1424
NspV	TTCGAA	1 cut(s)	1390
OliI	CACNNNNGTG	1 cut(s)	1436
PctI	GAATGC	1 cut(s)	739
PflFI	GACNNNGTC	1 cut(s)	1329
PleI	GAGTC	7 cut(s)	244, 337, 427, 692, 794, 922, 938
PluTI	GGCGCC	1 cut(s)	1470
PpsI	GAGTC	7 cut(s)	244, 337, 427, 692, 794, 922, 938
Ppu21I	YACGTR	1 cut(s)	1165
PpuMI	RGGWCCY	1 cut(s)	844
Psp5II	RGGWCCY	1 cut(s)	844
Psp6I	CCWGG	2 cut(s)	1612, 1759
PspGI	CCWGG	2 cut(s)	1612, 1759
PspN4I	GGNNCC	2 cut(s)	846, 1468
PspPI	GGNCC	2 cut(s)	844, 1742
PspPPI	RGGWCCY	1 cut(s)	844
PstNI	CAGNNNCTG	2 cut(s)	359, 1505
PsyI	GACNNNGTC	1 cut(s)	1329
RsaI	GTAC	1 cut(s)	1353
RsaNI	GTAC	1 cut(s)	1352
RseI	CAYNNNNRTG	1 cut(s)	1436
Sau3AI	GATC	3 cut(s)	1236, 1246, 1543
Sau96I	GGNCC	2 cut(s)	844, 1742
SchI	GAGTC	7 cut(s)	245, 338, 428, 692, 794, 922, 938
ScrFI	CCNGG	2 cut(s)	1614, 1761
SexAI	ACCWGGT	1 cut(s)	1612
SfaNI	GCATC	4 cut(s)	955, 1123, 1492, 1498
SfcI	CTRYAG	1 cut(s)	54
SfoI	GGCGCC	1 cut(s)	1468
SfuI	TTCGAA	1 cut(s)	1390
SinI	GGWCC	1 cut(s)	844
SmiMI	CAYNNNNRTG	1 cut(s)	1436
Sse9I	AATT	4 cut(s)	111, 1048, 1144, 1537
SsiI	CCGC	5 cut(s)	48, 122, 830, 1293, 1686
SspDI	GGCGCC	1 cut(s)	1466
SspI	AATATT	2 cut(s)	1063, 1347
SspMI	CTAG	2 cut(s)	1587, 1746
StyD4I	CCNGG	2 cut(s)	1612, 1759
StyI	CCWWGG	2 cut(s)	30, 1524
TaaI	ACNGT	4 cut(s)	245, 286, 1649, 1682
TaiI	ACGT	2 cut(s)	1022, 1167
TaqI	TCGA	5 cut(s)	1390, 1627, 1639, 1660, 1672
TasI	AATT	4 cut(s)	111, 1048, 1144, 1537
TauI	GCSGC	3 cut(s)	832, 1296, 1689
TscAI	CASTG	6 cut(s)	697, 1183, 1468, 1609, 1654, 1687
TseFI	GTSAC	3 cut(s)	692, 1335, 1424
Tsp45I	GTSAC	3 cut(s)	692, 1335, 1424
TspDTI	ATGAA	4 cut(s)	378, 384, 822, 918
TspRI	CASTG	6 cut(s)	697, 1183, 1468, 1609, 1654, 1687
Tth111I	GACNNNGTC	1 cut(s)	1329
VpaK11BI	GGWCC	1 cut(s)	844
XagI	CCTNNNNNAGG	1 cut(s)	1764
XapI	RAATTY	1 cut(s)	1144
XspI	CTAG	2 cut(s)	1587, 1746

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.