Rh4DG442500

RNA recognition motif

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4D
Physical Location & Seq
Forward (+)
64386211 .. 64390509
4299 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4DG442500.1

Sequence Viewer

Length: 1905 bp
ATGGGCAAGTCAAGCAAGAAGTCAGCCACCAAAGTTGAAGCAGCCCCTGCTGCTGCAGTTCCAGTCTCCAAGTCTGGCAAGAAAGGCAAGAGGGAAGCCGAGAATGAAATCGAGAAGGCAGTGAGTGCGAAGAAGCAGAAGAGAGACGAGGGTGTGGTGCAGGCCATCCAGAAAAAGAAGGCCGAAGCGAAGCTGCCGCAAAAGAAGAAGAAAGAAGAGAGCAGTAGTGAGGAGGAGTCTGACACTTCTTCATCAGAGGATGAGAAGCCTGCTCCTAAAACCAAAACTGTTGTTCCTCCCAAGAAGCAGGCCATAGTTGCTAAGAGTGGTACTGCCAAGAAGGAAGAGTCCAGCAGTTCTGAATCAGAGTCTGACTCTGATGAGGATGAAAAACCTGCTACCAAAACTGGAGATGCTGCAAAAAATGGGACAGTTGCTAAGAAAGCCGAGTCTTCTGACAGTTCAGATTCATCAGAAGATGATTCTGATGAGGATGATGTTCCTAAATCCAAAGCGACAAATTTGCCTCAAGTTGTGGCTAAGAATGGCAAGAAGAAAGAGGATTCCAGCTCCTTAGATACAGATTCTAGTGATGATTCAGAGGATGATGATGAAACTCCTGCTAAGGTTACTGCACCTGTGAAGAAGGTTGTTGCTCCTGCTGCAAAGAAGCCTGATTCAAGCAGCTCTGAAGGTGATTCTGATGATGAGGATACCAGTGACGACTCATCTGATGATTCAGAGGAAGAAAAGCCAAAGAATGCTAAACCTGCTGCTAAAAGAGCTCAACCATCAAAGAGTGAGAGTGAGAGTGAGAGTGAAAGTGACTCTGATGAAGAGCCACAAACTAAAAAACCAAAGGCCGAGGTCCCTGCTAAAGCTGCCCCAAAGGAAAGTAGTTCAGAGGAGGAGAGTGATGAGGATAGTTCAGATGAAGAATCAGAAGAAGAGGCAAAGACTCCAAAGAAAAAGGACTCTGATGTAGAGATGGTAGATGCTCAATCAAAATCCGAAAAGAAAGCTGTAATAGACTGTTTCCCCTACTTCATTATCTGCATTATCTCATATCACATATTTTGCTCTGACCTTTTGAATTTTATTACGCAGCCTAAAACCCCTGCTACTCCTGAAACATCGTCGTCTAAGACTTTGTTTGCTGGCAATTTGTCATTCAAGATTGAACAAAGAGATGTGGAAGAATTCTTCAAGGATGTTGCCGAAGTTGTTGAGGTCCGTTTCTCCTCTGATCAAGAAGGTCAGTTCAGGGGATATGGACATGTAGAGTTTGCCAGTGCAGAAGATGCCCAAAAGGCTCTGGAGTTGAATGGTTCAGATTTGTTGGGTCGTGCGGTGAGACTTGATCTGGCTCGTGAAAGGGGCGAAAGGGGTGCTTATACTCCTCACAGCGGCAAAGAGAGCAACTCATATCAGAAGGGAGGACAAGGTCAGTCACAGACAATTTTTGTACGAGGATTTGATACAAACCAGGGGGAGGACGAGATCCGAGGTGCCCTGCAAAGTCATTTTGGTTCGTGTGGAGAGATAACACGGGTGTCCATCCCAAAAGATTATGAAACTGGCGCCTCCAAGGGGATGGCCTACATGGACTTCTCATCTGCGGATGCTTTCAGCAAAGCTTTGGAGCTTGATCAAAGTGATCTTGGAAATGGCTGTTATTTGAATGTCCAACCGGCCAAACCTAAAGGTGATTTTGGAGAGAGGACTTCTGGTAATCGTTTTGATAATGGTGGCCGTCGAGGTGGCCGTCGAGGTGGTCGTTATGAGAGTGGTGGCCGCCGTGGTGGTGGTCGTTTGGATAGTGGTGGCCGTCGTGGTGGTAGGGATTCTGGTGGTAGGCGTGGAGGGAGAGGTCCTAGCCTAGCTACTCCGGGAACAGGTTGGTAG

Protein Analysis

634

Amino Acids

67.91

Weight (kDa)

5.0

Isoelectric Point (pI)

57.82

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RRM_1 PF00076 384 - 451 5.4e-15 RNA recognition motif
RRM_1 PF00076 487 - 556 3.6e-09 RNA recognition motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 403, 778
AccB1I GGYRCC 2 cut(s) 1508, 1580
AciI CCGC 5 cut(s) 197, 1349, 1407, 1619, 1795
AclWI GGATC 1 cut(s) 1495
AcoI YGGCCR 5 cut(s) 1692, 1750, 1762, 1792, 1825
AcsI RAATTY 3 cut(s) 520, 1093, 1199
AcuI CTGAAG 1 cut(s) 711
AcyI GRCGYC 1 cut(s) 1581
AfaI GTAC 2 cut(s) 331, 1467
AfiI CCNNNNNNNGG 4 cut(s) 1406, 1492, 1590, 1895
AflIII ACRYGT 1 cut(s) 1276
AgsI TTSAA 8 cut(s) 38, 681, 1093, 1174, 1181, 1207, 1324, 1681
AjnI CCWGG 1 cut(s) 1485
AluBI AGCT 9 cut(s) 193, 570, 687, 785, 881, 1022, 1637, 1645, 1883
AluI AGCT 9 cut(s) 193, 570, 687, 785, 881, 1022, 1637, 1645, 1883
Alw21I GWGCWC 1 cut(s) 787
Alw26I GTCTC 3 cut(s) 70, 138, 1348
AlwI GGATC 1 cut(s) 1495
AlwNI CAGNNNCTG 2 cut(s) 47, 371
ApoI RAATTY 3 cut(s) 520, 1093, 1199
AspLEI GCGC 1 cut(s) 1583
AspS9I GGNCC 3 cut(s) 868, 1231, 1871
AsuC2I CCSGG 1 cut(s) 1890
AsuHPI GGTGA 3 cut(s) 707, 1363, 1718
AvaII GGWCC 3 cut(s) 868, 1231, 1871
BaeGI GKGCMC 1 cut(s) 1513
BanI GGYRCC 2 cut(s) 1508, 1580
BanII GRGCYC 1 cut(s) 787
BauI CACGAG 1 cut(s) 1368
BbsI GAAGAC 1 cut(s) 444
Bbv12I GWGCWC 1 cut(s) 787
BccI CCATC 5 cut(s) 173, 799, 982, 1565, 1588
BceAI ACGGC 4 cut(s) 1737, 1749, 1782, 1812
BcgI CGANNNNNNTGC 6 cut(s) 505, 539, 854, 888, 1370, 1404
BciT130I CCWGG 1 cut(s) 1487
BciVI GTATCC 1 cut(s) 706
BclI TGATCA 2 cut(s) 1246, 1648
BcnI CCSGG 1 cut(s) 1890
BcoDI GTCTC 3 cut(s) 70, 138, 1348
BfaI CTAG 3 cut(s) 588, 1875, 1880
BfmI CTRYAG 1 cut(s) 54
BfoI RGCGCY 1 cut(s) 1584
BfuAI ACCTGC 2 cut(s) 403, 778
BfuI GTATCC 1 cut(s) 706
BglI GCCNNNNNGGC 1 cut(s) 1310
Bme1390I CCNGG 2 cut(s) 1487, 1890
Bme18I GGWCC 3 cut(s) 868, 1231, 1871
BmgT120I GGNCC 3 cut(s) 868, 1231, 1871
BmiI GGNNCC 3 cut(s) 870, 1510, 1582
BmrFI CCNGG 2 cut(s) 1487, 1890
BmsI GCATC 4 cut(s) 403, 985, 1291, 1612
BpiI GAAGAC 1 cut(s) 444
BplI GAGNNNNNCTC 4 cut(s) 359, 391, 1406, 1438
BpmI CTGGAG 2 cut(s) 429, 1337
Bpu10I CCTNAGC 1 cut(s) 624
BpuEI CTTGAG 1 cut(s) 513
BpuMI CCSGG 1 cut(s) 1890
BsaHI GRCGYC 1 cut(s) 1581
BsaJI CCNNGG 5 cut(s) 864, 1486, 1504, 1587, 1798
Bsc4I CCNNNNNNNGG 4 cut(s) 1406, 1492, 1590, 1895
Bse118I RCCGGY 1 cut(s) 1690
Bse1I ACTGG 5 cut(s) 62, 412, 717, 1290, 1582
BseBI CCWGG 1 cut(s) 1487
BseDI CCNNGG 5 cut(s) 864, 1486, 1504, 1587, 1798
BseGI GGATG 9 cut(s) 165, 265, 391, 499, 610, 1216, 1557, 1599, 1627
BseLI CCNNNNNNNGG 4 cut(s) 1406, 1492, 1590, 1895
BseNI ACTGG 5 cut(s) 62, 412, 717, 1290, 1582
BseRI GAGGAG 6 cut(s) 245, 248, 920, 923, 1231, 1389
BseSI GKGCMC 1 cut(s) 1513
BsgI GTGCAG 3 cut(s) 179, 618, 1314
BshNI GGYRCC 2 cut(s) 1508, 1580
BsiHKAI GWGCWC 1 cut(s) 787
BsiSI CCGG 2 cut(s) 1691, 1889
BslFI GGGAC 2 cut(s) 442, 854
BslI CCNNNNNNNGG 4 cut(s) 1406, 1492, 1590, 1895
BsmAI GTCTC 3 cut(s) 70, 138, 1348
BsmBI CGTCTC 1 cut(s) 138
BsmFI GGGAC 2 cut(s) 442, 854
BsmI GAATGC 1 cut(s) 766
Bsp1286I GDGCHC 2 cut(s) 787, 1513
Bsp143I GATC 5 cut(s) 1246, 1360, 1500, 1648, 1657
BspACI CCGC 5 cut(s) 197, 1349, 1407, 1619, 1795
BspLI GGNNCC 3 cut(s) 870, 1510, 1582
BspMAI CTGCAG 1 cut(s) 58
BspMI ACCTGC 2 cut(s) 403, 778
BspPI GGATC 1 cut(s) 1495
BspQI GCTCTTC 1 cut(s) 831
BspT107I GGYRCC 2 cut(s) 1508, 1580
BsrFI RCCGGY 1 cut(s) 1690
BsrI ACTGG 5 cut(s) 62, 412, 717, 1290, 1582
BssAI RCCGGY 1 cut(s) 1690
BssECI CCNNGG 5 cut(s) 864, 1486, 1504, 1587, 1798
BssMI GATC 5 cut(s) 1246, 1360, 1500, 1648, 1657
BssNI GRCGYC 1 cut(s) 1581
BssSI CACGAG 1 cut(s) 1368
BssT1I CCWWGG 1 cut(s) 1587
Bst2BI CACGAG 1 cut(s) 1368
Bst2UI CCWGG 1 cut(s) 1487
Bst4CI ACNGT 4 cut(s) 289, 433, 461, 1034
Bst6I CTCTTC 5 cut(s) 134, 210, 339, 831, 942
BstACI GRCGYC 1 cut(s) 1581
BstAPI GCANNNNNTGC 3 cut(s) 47, 125, 1301
BstC8I GCNNGC 4 cut(s) 162, 270, 309, 1159
BstDEI CTNAG 6 cut(s) 321, 438, 540, 574, 624, 1143
BstDSI CCRYGG 1 cut(s) 1798
BstF5I GGATG 9 cut(s) 165, 265, 391, 499, 610, 1216, 1557, 1599, 1627
BstH2I RGCGCY 1 cut(s) 1584
BstHHI GCGC 1 cut(s) 1583
BstKTI GATC 5 cut(s) 1249, 1363, 1503, 1651, 1660
BstMAI GTCTC 3 cut(s) 70, 138, 1348
BstMBI GATC 5 cut(s) 1246, 1360, 1500, 1648, 1657
BstNI CCWGG 1 cut(s) 1487
BstNSI RCATGY 1 cut(s) 1280
BstSCI CCNGG 2 cut(s) 1485, 1888
BstSFI CTRYAG 1 cut(s) 54
BstSLI GKGCMC 1 cut(s) 1513
BstV2I GAAGAC 1 cut(s) 444
BstX2I RGATCY 1 cut(s) 1500
BstXI CCANNNNNNTGG 1 cut(s) 1594
BstYI RGATCY 1 cut(s) 1500
BsuI GTATCC 1 cut(s) 706
BtgI CCRYGG 1 cut(s) 1798
BtsCI GGATG 9 cut(s) 165, 265, 391, 499, 610, 1216, 1557, 1599, 1627
BtsI GCAGTG 1 cut(s) 126
BtsIMutI CAGTG 3 cut(s) 126, 724, 1297
BveI ACCTGC 2 cut(s) 403, 778
Cac8I GCNNGC 4 cut(s) 162, 270, 309, 1159
CaiI CAGNNNCTG 2 cut(s) 47, 371
CfoI GCGC 1 cut(s) 1583
Cfr10I RCCGGY 1 cut(s) 1690
Cfr13I GGNCC 3 cut(s) 868, 1231, 1871
Csp6I GTAC 2 cut(s) 330, 1466
CspCI CAANNNNNGTGG 2 cut(s) 16, 51
CviAII CATG 2 cut(s) 1277, 1603
CviQI GTAC 2 cut(s) 330, 1466
DdeI CTNAG 6 cut(s) 321, 438, 540, 574, 624, 1143
DinI GGCGCC 1 cut(s) 1582
DpnI GATC 5 cut(s) 1248, 1362, 1502, 1650, 1659
DpnII GATC 5 cut(s) 1246, 1360, 1500, 1648, 1657
EaeI YGGCCR 5 cut(s) 1692, 1750, 1762, 1792, 1825
Eam1104I CTCTTC 5 cut(s) 134, 210, 339, 831, 942
EarI CTCTTC 5 cut(s) 134, 210, 339, 831, 942
Ecl136II GAGCTC 1 cut(s) 785
Eco130I CCWWGG 1 cut(s) 1587
Eco24I GRGCYC 1 cut(s) 787
Eco47I GGWCC 3 cut(s) 868, 1231, 1871
Eco53kI GAGCTC 1 cut(s) 785
Eco57I CTGAAG 1 cut(s) 711
EcoICRI GAGCTC 1 cut(s) 785
EcoO109I RGGNCCY 2 cut(s) 868, 1871
EcoRI GAATTC 1 cut(s) 1199
EcoRII CCWGG 1 cut(s) 1485
EcoT14I CCWWGG 1 cut(s) 1587
EcoT38I GRGCYC 1 cut(s) 787
EgeI GGCGCC 1 cut(s) 1582
EheI GGCGCC 1 cut(s) 1582
ErhI CCWWGG 1 cut(s) 1587
Esp3I CGTCTC 1 cut(s) 138
FaeI CATG 2 cut(s) 1280, 1606
FalI AAGNNNNNCTT 2 cut(s) 1375, 1407
FaqI GGGAC 2 cut(s) 442, 854
FatI CATG 2 cut(s) 1276, 1602
FbaI TGATCA 2 cut(s) 1246, 1648
FokI GGATG 9 cut(s) 152, 272, 398, 506, 617, 1223, 1544, 1606, 1634
FriOI GRGCYC 1 cut(s) 787
FspBI CTAG 3 cut(s) 588, 1875, 1880
GlaI GCGC 1 cut(s) 1582
GsuI CTGGAG 2 cut(s) 429, 1337
HaeII RGCGCY 1 cut(s) 1584
HapII CCGG 2 cut(s) 1691, 1889
HhaI GCGC 1 cut(s) 1583
Hin1I GRCGYC 1 cut(s) 1581
Hin1II CATG 2 cut(s) 1280, 1606
Hin6I GCGC 1 cut(s) 1581
HinP1I GCGC 1 cut(s) 1581
HindIII AAGCTT 1 cut(s) 1635
HpaII CCGG 2 cut(s) 1691, 1889
HphI GGTGA 3 cut(s) 707, 1363, 1718
Hpy188III TCNNGA 7 cut(s) 112, 169, 1127, 1174, 1250, 1316, 1370
Hpy99I CGWCG 4 cut(s) 1141, 1758, 1770, 1833
HpyAV CCTTC 7 cut(s) 109, 172, 334, 640, 686, 1247, 1426
HpyCH4III ACNGT 4 cut(s) 289, 433, 461, 1034
HpyCH4V TGCA 8 cut(s) 56, 160, 419, 635, 665, 1056, 1295, 1516
HpyF3I CTNAG 6 cut(s) 321, 438, 540, 574, 624, 1143
Hsp92I GRCGYC 1 cut(s) 1581
Hsp92II CATG 2 cut(s) 1280, 1606
HspAI GCGC 1 cut(s) 1581
KasI GGCGCC 1 cut(s) 1580
Ksp22I TGATCA 2 cut(s) 1246, 1648
Kzo9I GATC 5 cut(s) 1246, 1360, 1500, 1648, 1657
LguI GCTCTTC 1 cut(s) 831
LmnI GCTCC 4 cut(s) 277, 575, 661, 1642
LweI GCATC 4 cut(s) 403, 985, 1291, 1612
MaeI CTAG 3 cut(s) 588, 1875, 1880
MaeIII GTNAC 4 cut(s) 628, 719, 824, 1449
MalI GATC 5 cut(s) 1248, 1362, 1502, 1650, 1659
MboI GATC 5 cut(s) 1246, 1360, 1500, 1648, 1657
MflI RGATCY 1 cut(s) 1500
MhlI GDGCHC 2 cut(s) 787, 1513
MluCI AATT 5 cut(s) 520, 1093, 1162, 1199, 1458
Mly113I GGCGCC 1 cut(s) 1581
MlyI GAGTC 9 cut(s) 245, 356, 368, 377, 458, 719, 821, 952, 968
MmeI TCCRAC 1 cut(s) 1711
MspA1I CMGCKG 1 cut(s) 1407
MspI CCGG 2 cut(s) 1691, 1889
MspR9I CCNGG 2 cut(s) 1487, 1890
Mva1269I GAATGC 1 cut(s) 766
MvaI CCWGG 1 cut(s) 1487
NarI GGCGCC 1 cut(s) 1581
NciI CCSGG 1 cut(s) 1890
NdeII GATC 5 cut(s) 1246, 1360, 1500, 1648, 1657
NlaIII CATG 2 cut(s) 1280, 1606
NlaIV GGNNCC 3 cut(s) 870, 1510, 1582
NmeAIII GCCGAG 3 cut(s) 124, 472, 889
NmuCI GTSAC 3 cut(s) 719, 824, 1449
NspI RCATGY 1 cut(s) 1280
PciI ACATGT 1 cut(s) 1276
PciSI GCTCTTC 1 cut(s) 831
PcsI WCGNNNNNNNCGW 2 cut(s) 1762, 1774
PctI GAATGC 1 cut(s) 766
PflFI GACNNNGTC 1 cut(s) 1443
PfoI TCCNGGA 1 cut(s) 1888
PleI GAGTC 9 cut(s) 244, 355, 368, 376, 457, 719, 821, 952, 968
PluTI GGCGCC 1 cut(s) 1584
PpsI GAGTC 9 cut(s) 244, 355, 368, 376, 457, 719, 821, 952, 968
PpuMI RGGWCCY 2 cut(s) 868, 1871
PscI ACATGT 1 cut(s) 1276
Psp124BI GAGCTC 1 cut(s) 787
Psp5II RGGWCCY 2 cut(s) 868, 1871
Psp6I CCWGG 1 cut(s) 1485
PspGI CCWGG 1 cut(s) 1485
PspN4I GGNNCC 3 cut(s) 870, 1510, 1582
PspPI GGNCC 3 cut(s) 868, 1231, 1871
PspPPI RGGWCCY 2 cut(s) 868, 1871
PstI CTGCAG 1 cut(s) 58
PstNI CAGNNNCTG 2 cut(s) 47, 371
PsuI RGATCY 1 cut(s) 1500
PsyI GACNNNGTC 1 cut(s) 1443
RsaI GTAC 2 cut(s) 331, 1467
RsaNI GTAC 2 cut(s) 330, 1466
SacI GAGCTC 1 cut(s) 787
SapI GCTCTTC 1 cut(s) 831
Sau3AI GATC 5 cut(s) 1246, 1360, 1500, 1648, 1657
Sau96I GGNCC 3 cut(s) 868, 1231, 1871
SchI GAGTC 9 cut(s) 245, 356, 368, 377, 458, 719, 821, 952, 968
ScrFI CCNGG 2 cut(s) 1487, 1890
SduI GDGCHC 2 cut(s) 787, 1513
SfaNI GCATC 4 cut(s) 403, 985, 1291, 1612
SfcI CTRYAG 1 cut(s) 54
SfoI GGCGCC 1 cut(s) 1582
SinI GGWCC 3 cut(s) 868, 1231, 1871
SmlI CTYRAG 1 cut(s) 528
SmoI CTYRAG 1 cut(s) 528
Sse9I AATT 5 cut(s) 520, 1093, 1162, 1199, 1458
SsiI CCGC 5 cut(s) 197, 1349, 1407, 1619, 1795
SspDI GGCGCC 1 cut(s) 1580
SspMI CTAG 3 cut(s) 588, 1875, 1880
SstI GAGCTC 1 cut(s) 787
StyD4I CCNGG 2 cut(s) 1485, 1888
StyI CCWWGG 1 cut(s) 1587
TaaI ACNGT 4 cut(s) 289, 433, 461, 1034
TaqI TCGA 3 cut(s) 111, 1756, 1768
TasI AATT 5 cut(s) 520, 1093, 1162, 1199, 1458
TauI GCSGC 3 cut(s) 199, 1410, 1797
TscAI CASTG 3 cut(s) 126, 724, 1297
TseFI GTSAC 3 cut(s) 719, 824, 1449
Tsp45I GTSAC 3 cut(s) 719, 824, 1449
TspDTI ATGAA 9 cut(s) 120, 240, 402, 459, 627, 849, 948, 1036, 1587
TspGWI ACGGA 1 cut(s) 1223
TspRI CASTG 3 cut(s) 126, 724, 1297
Tth111I GACNNNGTC 1 cut(s) 1443
VpaK11BI GGWCC 3 cut(s) 868, 1231, 1871
XapI RAATTY 3 cut(s) 520, 1093, 1199
XceI RCATGY 1 cut(s) 1280
XspI CTAG 3 cut(s) 588, 1875, 1880
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.