RNA recognition motif
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT4G08760 |
| fragaria_vesca | FvH4_4g36861 FvH4_4g36861 FvH4_4g36861 FvH4_4g36861 FvH4_5g39267 FvH4_5g39267 FvH4_5g39267 FvH4_5g39267 FvH4_5g39267 FvH4_5g39267 |
| rosa_chinensis | RchiOBHm_Chr4g0446621 |
| rosa_laevigata | RLG00000005644 |
| rosa_multiflora | Rmu_co7993076.1_g000001 Rmu_sc0030348.1_g000001 |
| rosa_rugosa | Rorug04G0373200 Rorug04G0373300 Rorug04G0373400 |
| rosa_samantha | Rh4AG434600 Rh4BG443700 Rh4CG461000 Rh4DG442500 |
| rosa_wichuraiana | Rw4G037150 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 2 cut(s) | 403, 778 |
| AccB1I | GGYRCC | 2 cut(s) | 1508, 1580 |
| AciI | CCGC | 5 cut(s) | 197, 1349, 1407, 1619, 1795 |
| AclWI | GGATC | 1 cut(s) | 1495 |
| AcoI | YGGCCR | 5 cut(s) | 1692, 1750, 1762, 1792, 1825 |
| AcsI | RAATTY | 3 cut(s) | 520, 1093, 1199 |
| AcuI | CTGAAG | 1 cut(s) | 711 |
| AcyI | GRCGYC | 1 cut(s) | 1581 |
| AfaI | GTAC | 2 cut(s) | 331, 1467 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 1406, 1492, 1590, 1895 |
| AflIII | ACRYGT | 1 cut(s) | 1276 |
| AgsI | TTSAA | 8 cut(s) | 38, 681, 1093, 1174, 1181, 1207, 1324, 1681 |
| AjnI | CCWGG | 1 cut(s) | 1485 |
| AluBI | AGCT | 9 cut(s) | 193, 570, 687, 785, 881, 1022, 1637, 1645, 1883 |
| AluI | AGCT | 9 cut(s) | 193, 570, 687, 785, 881, 1022, 1637, 1645, 1883 |
| Alw21I | GWGCWC | 1 cut(s) | 787 |
| Alw26I | GTCTC | 3 cut(s) | 70, 138, 1348 |
| AlwI | GGATC | 1 cut(s) | 1495 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 47, 371 |
| ApoI | RAATTY | 3 cut(s) | 520, 1093, 1199 |
| AspLEI | GCGC | 1 cut(s) | 1583 |
| AspS9I | GGNCC | 3 cut(s) | 868, 1231, 1871 |
| AsuC2I | CCSGG | 1 cut(s) | 1890 |
| AsuHPI | GGTGA | 3 cut(s) | 707, 1363, 1718 |
| AvaII | GGWCC | 3 cut(s) | 868, 1231, 1871 |
| BaeGI | GKGCMC | 1 cut(s) | 1513 |
| BanI | GGYRCC | 2 cut(s) | 1508, 1580 |
| BanII | GRGCYC | 1 cut(s) | 787 |
| BauI | CACGAG | 1 cut(s) | 1368 |
| BbsI | GAAGAC | 1 cut(s) | 444 |
| Bbv12I | GWGCWC | 1 cut(s) | 787 |
| BccI | CCATC | 5 cut(s) | 173, 799, 982, 1565, 1588 |
| BceAI | ACGGC | 4 cut(s) | 1737, 1749, 1782, 1812 |
| BcgI | CGANNNNNNTGC | 6 cut(s) | 505, 539, 854, 888, 1370, 1404 |
| BciT130I | CCWGG | 1 cut(s) | 1487 |
| BciVI | GTATCC | 1 cut(s) | 706 |
| BclI | TGATCA | 2 cut(s) | 1246, 1648 |
| BcnI | CCSGG | 1 cut(s) | 1890 |
| BcoDI | GTCTC | 3 cut(s) | 70, 138, 1348 |
| BfaI | CTAG | 3 cut(s) | 588, 1875, 1880 |
| BfmI | CTRYAG | 1 cut(s) | 54 |
| BfoI | RGCGCY | 1 cut(s) | 1584 |
| BfuAI | ACCTGC | 2 cut(s) | 403, 778 |
| BfuI | GTATCC | 1 cut(s) | 706 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 1310 |
| Bme1390I | CCNGG | 2 cut(s) | 1487, 1890 |
| Bme18I | GGWCC | 3 cut(s) | 868, 1231, 1871 |
| BmgT120I | GGNCC | 3 cut(s) | 868, 1231, 1871 |
| BmiI | GGNNCC | 3 cut(s) | 870, 1510, 1582 |
| BmrFI | CCNGG | 2 cut(s) | 1487, 1890 |
| BmsI | GCATC | 4 cut(s) | 403, 985, 1291, 1612 |
| BpiI | GAAGAC | 1 cut(s) | 444 |
| BplI | GAGNNNNNCTC | 4 cut(s) | 359, 391, 1406, 1438 |
| BpmI | CTGGAG | 2 cut(s) | 429, 1337 |
| Bpu10I | CCTNAGC | 1 cut(s) | 624 |
| BpuEI | CTTGAG | 1 cut(s) | 513 |
| BpuMI | CCSGG | 1 cut(s) | 1890 |
| BsaHI | GRCGYC | 1 cut(s) | 1581 |
| BsaJI | CCNNGG | 5 cut(s) | 864, 1486, 1504, 1587, 1798 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 1406, 1492, 1590, 1895 |
| Bse118I | RCCGGY | 1 cut(s) | 1690 |
| Bse1I | ACTGG | 5 cut(s) | 62, 412, 717, 1290, 1582 |
| BseBI | CCWGG | 1 cut(s) | 1487 |
| BseDI | CCNNGG | 5 cut(s) | 864, 1486, 1504, 1587, 1798 |
| BseGI | GGATG | 9 cut(s) | 165, 265, 391, 499, 610, 1216, 1557, 1599, 1627 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 1406, 1492, 1590, 1895 |
| BseNI | ACTGG | 5 cut(s) | 62, 412, 717, 1290, 1582 |
| BseRI | GAGGAG | 6 cut(s) | 245, 248, 920, 923, 1231, 1389 |
| BseSI | GKGCMC | 1 cut(s) | 1513 |
| BsgI | GTGCAG | 3 cut(s) | 179, 618, 1314 |
| BshNI | GGYRCC | 2 cut(s) | 1508, 1580 |
| BsiHKAI | GWGCWC | 1 cut(s) | 787 |
| BsiSI | CCGG | 2 cut(s) | 1691, 1889 |
| BslFI | GGGAC | 2 cut(s) | 442, 854 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 1406, 1492, 1590, 1895 |
| BsmAI | GTCTC | 3 cut(s) | 70, 138, 1348 |
| BsmBI | CGTCTC | 1 cut(s) | 138 |
| BsmFI | GGGAC | 2 cut(s) | 442, 854 |
| BsmI | GAATGC | 1 cut(s) | 766 |
| Bsp1286I | GDGCHC | 2 cut(s) | 787, 1513 |
| Bsp143I | GATC | 5 cut(s) | 1246, 1360, 1500, 1648, 1657 |
| BspACI | CCGC | 5 cut(s) | 197, 1349, 1407, 1619, 1795 |
| BspLI | GGNNCC | 3 cut(s) | 870, 1510, 1582 |
| BspMAI | CTGCAG | 1 cut(s) | 58 |
| BspMI | ACCTGC | 2 cut(s) | 403, 778 |
| BspPI | GGATC | 1 cut(s) | 1495 |
| BspQI | GCTCTTC | 1 cut(s) | 831 |
| BspT107I | GGYRCC | 2 cut(s) | 1508, 1580 |
| BsrFI | RCCGGY | 1 cut(s) | 1690 |
| BsrI | ACTGG | 5 cut(s) | 62, 412, 717, 1290, 1582 |
| BssAI | RCCGGY | 1 cut(s) | 1690 |
| BssECI | CCNNGG | 5 cut(s) | 864, 1486, 1504, 1587, 1798 |
| BssMI | GATC | 5 cut(s) | 1246, 1360, 1500, 1648, 1657 |
| BssNI | GRCGYC | 1 cut(s) | 1581 |
| BssSI | CACGAG | 1 cut(s) | 1368 |
| BssT1I | CCWWGG | 1 cut(s) | 1587 |
| Bst2BI | CACGAG | 1 cut(s) | 1368 |
| Bst2UI | CCWGG | 1 cut(s) | 1487 |
| Bst4CI | ACNGT | 4 cut(s) | 289, 433, 461, 1034 |
| Bst6I | CTCTTC | 5 cut(s) | 134, 210, 339, 831, 942 |
| BstACI | GRCGYC | 1 cut(s) | 1581 |
| BstAPI | GCANNNNNTGC | 3 cut(s) | 47, 125, 1301 |
| BstC8I | GCNNGC | 4 cut(s) | 162, 270, 309, 1159 |
| BstDEI | CTNAG | 6 cut(s) | 321, 438, 540, 574, 624, 1143 |
| BstDSI | CCRYGG | 1 cut(s) | 1798 |
| BstF5I | GGATG | 9 cut(s) | 165, 265, 391, 499, 610, 1216, 1557, 1599, 1627 |
| BstH2I | RGCGCY | 1 cut(s) | 1584 |
| BstHHI | GCGC | 1 cut(s) | 1583 |
| BstKTI | GATC | 5 cut(s) | 1249, 1363, 1503, 1651, 1660 |
| BstMAI | GTCTC | 3 cut(s) | 70, 138, 1348 |
| BstMBI | GATC | 5 cut(s) | 1246, 1360, 1500, 1648, 1657 |
| BstNI | CCWGG | 1 cut(s) | 1487 |
| BstNSI | RCATGY | 1 cut(s) | 1280 |
| BstSCI | CCNGG | 2 cut(s) | 1485, 1888 |
| BstSFI | CTRYAG | 1 cut(s) | 54 |
| BstSLI | GKGCMC | 1 cut(s) | 1513 |
| BstV2I | GAAGAC | 1 cut(s) | 444 |
| BstX2I | RGATCY | 1 cut(s) | 1500 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 1594 |
| BstYI | RGATCY | 1 cut(s) | 1500 |
| BsuI | GTATCC | 1 cut(s) | 706 |
| BtgI | CCRYGG | 1 cut(s) | 1798 |
| BtsCI | GGATG | 9 cut(s) | 165, 265, 391, 499, 610, 1216, 1557, 1599, 1627 |
| BtsI | GCAGTG | 1 cut(s) | 126 |
| BtsIMutI | CAGTG | 3 cut(s) | 126, 724, 1297 |
| BveI | ACCTGC | 2 cut(s) | 403, 778 |
| Cac8I | GCNNGC | 4 cut(s) | 162, 270, 309, 1159 |
| CaiI | CAGNNNCTG | 2 cut(s) | 47, 371 |
| CfoI | GCGC | 1 cut(s) | 1583 |
| Cfr10I | RCCGGY | 1 cut(s) | 1690 |
| Cfr13I | GGNCC | 3 cut(s) | 868, 1231, 1871 |
| Csp6I | GTAC | 2 cut(s) | 330, 1466 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 16, 51 |
| CviAII | CATG | 2 cut(s) | 1277, 1603 |
| CviQI | GTAC | 2 cut(s) | 330, 1466 |
| DdeI | CTNAG | 6 cut(s) | 321, 438, 540, 574, 624, 1143 |
| DinI | GGCGCC | 1 cut(s) | 1582 |
| DpnI | GATC | 5 cut(s) | 1248, 1362, 1502, 1650, 1659 |
| DpnII | GATC | 5 cut(s) | 1246, 1360, 1500, 1648, 1657 |
| EaeI | YGGCCR | 5 cut(s) | 1692, 1750, 1762, 1792, 1825 |
| Eam1104I | CTCTTC | 5 cut(s) | 134, 210, 339, 831, 942 |
| EarI | CTCTTC | 5 cut(s) | 134, 210, 339, 831, 942 |
| Ecl136II | GAGCTC | 1 cut(s) | 785 |
| Eco130I | CCWWGG | 1 cut(s) | 1587 |
| Eco24I | GRGCYC | 1 cut(s) | 787 |
| Eco47I | GGWCC | 3 cut(s) | 868, 1231, 1871 |
| Eco53kI | GAGCTC | 1 cut(s) | 785 |
| Eco57I | CTGAAG | 1 cut(s) | 711 |
| EcoICRI | GAGCTC | 1 cut(s) | 785 |
| EcoO109I | RGGNCCY | 2 cut(s) | 868, 1871 |
| EcoRI | GAATTC | 1 cut(s) | 1199 |
| EcoRII | CCWGG | 1 cut(s) | 1485 |
| EcoT14I | CCWWGG | 1 cut(s) | 1587 |
| EcoT38I | GRGCYC | 1 cut(s) | 787 |
| EgeI | GGCGCC | 1 cut(s) | 1582 |
| EheI | GGCGCC | 1 cut(s) | 1582 |
| ErhI | CCWWGG | 1 cut(s) | 1587 |
| Esp3I | CGTCTC | 1 cut(s) | 138 |
| FaeI | CATG | 2 cut(s) | 1280, 1606 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 1375, 1407 |
| FaqI | GGGAC | 2 cut(s) | 442, 854 |
| FatI | CATG | 2 cut(s) | 1276, 1602 |
| FbaI | TGATCA | 2 cut(s) | 1246, 1648 |
| FokI | GGATG | 9 cut(s) | 152, 272, 398, 506, 617, 1223, 1544, 1606, 1634 |
| FriOI | GRGCYC | 1 cut(s) | 787 |
| FspBI | CTAG | 3 cut(s) | 588, 1875, 1880 |
| GlaI | GCGC | 1 cut(s) | 1582 |
| GsuI | CTGGAG | 2 cut(s) | 429, 1337 |
| HaeII | RGCGCY | 1 cut(s) | 1584 |
| HapII | CCGG | 2 cut(s) | 1691, 1889 |
| HhaI | GCGC | 1 cut(s) | 1583 |
| Hin1I | GRCGYC | 1 cut(s) | 1581 |
| Hin1II | CATG | 2 cut(s) | 1280, 1606 |
| Hin6I | GCGC | 1 cut(s) | 1581 |
| HinP1I | GCGC | 1 cut(s) | 1581 |
| HindIII | AAGCTT | 1 cut(s) | 1635 |
| HpaII | CCGG | 2 cut(s) | 1691, 1889 |
| HphI | GGTGA | 3 cut(s) | 707, 1363, 1718 |
| Hpy188III | TCNNGA | 7 cut(s) | 112, 169, 1127, 1174, 1250, 1316, 1370 |
| Hpy99I | CGWCG | 4 cut(s) | 1141, 1758, 1770, 1833 |
| HpyAV | CCTTC | 7 cut(s) | 109, 172, 334, 640, 686, 1247, 1426 |
| HpyCH4III | ACNGT | 4 cut(s) | 289, 433, 461, 1034 |
| HpyCH4V | TGCA | 8 cut(s) | 56, 160, 419, 635, 665, 1056, 1295, 1516 |
| HpyF3I | CTNAG | 6 cut(s) | 321, 438, 540, 574, 624, 1143 |
| Hsp92I | GRCGYC | 1 cut(s) | 1581 |
| Hsp92II | CATG | 2 cut(s) | 1280, 1606 |
| HspAI | GCGC | 1 cut(s) | 1581 |
| KasI | GGCGCC | 1 cut(s) | 1580 |
| Ksp22I | TGATCA | 2 cut(s) | 1246, 1648 |
| Kzo9I | GATC | 5 cut(s) | 1246, 1360, 1500, 1648, 1657 |
| LguI | GCTCTTC | 1 cut(s) | 831 |
| LmnI | GCTCC | 4 cut(s) | 277, 575, 661, 1642 |
| LweI | GCATC | 4 cut(s) | 403, 985, 1291, 1612 |
| MaeI | CTAG | 3 cut(s) | 588, 1875, 1880 |
| MaeIII | GTNAC | 4 cut(s) | 628, 719, 824, 1449 |
| MalI | GATC | 5 cut(s) | 1248, 1362, 1502, 1650, 1659 |
| MboI | GATC | 5 cut(s) | 1246, 1360, 1500, 1648, 1657 |
| MflI | RGATCY | 1 cut(s) | 1500 |
| MhlI | GDGCHC | 2 cut(s) | 787, 1513 |
| MluCI | AATT | 5 cut(s) | 520, 1093, 1162, 1199, 1458 |
| Mly113I | GGCGCC | 1 cut(s) | 1581 |
| MlyI | GAGTC | 9 cut(s) | 245, 356, 368, 377, 458, 719, 821, 952, 968 |
| MmeI | TCCRAC | 1 cut(s) | 1711 |
| MspA1I | CMGCKG | 1 cut(s) | 1407 |
| MspI | CCGG | 2 cut(s) | 1691, 1889 |
| MspR9I | CCNGG | 2 cut(s) | 1487, 1890 |
| Mva1269I | GAATGC | 1 cut(s) | 766 |
| MvaI | CCWGG | 1 cut(s) | 1487 |
| NarI | GGCGCC | 1 cut(s) | 1581 |
| NciI | CCSGG | 1 cut(s) | 1890 |
| NdeII | GATC | 5 cut(s) | 1246, 1360, 1500, 1648, 1657 |
| NlaIII | CATG | 2 cut(s) | 1280, 1606 |
| NlaIV | GGNNCC | 3 cut(s) | 870, 1510, 1582 |
| NmeAIII | GCCGAG | 3 cut(s) | 124, 472, 889 |
| NmuCI | GTSAC | 3 cut(s) | 719, 824, 1449 |
| NspI | RCATGY | 1 cut(s) | 1280 |
| PciI | ACATGT | 1 cut(s) | 1276 |
| PciSI | GCTCTTC | 1 cut(s) | 831 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 1762, 1774 |
| PctI | GAATGC | 1 cut(s) | 766 |
| PflFI | GACNNNGTC | 1 cut(s) | 1443 |
| PfoI | TCCNGGA | 1 cut(s) | 1888 |
| PleI | GAGTC | 9 cut(s) | 244, 355, 368, 376, 457, 719, 821, 952, 968 |
| PluTI | GGCGCC | 1 cut(s) | 1584 |
| PpsI | GAGTC | 9 cut(s) | 244, 355, 368, 376, 457, 719, 821, 952, 968 |
| PpuMI | RGGWCCY | 2 cut(s) | 868, 1871 |
| PscI | ACATGT | 1 cut(s) | 1276 |
| Psp124BI | GAGCTC | 1 cut(s) | 787 |
| Psp5II | RGGWCCY | 2 cut(s) | 868, 1871 |
| Psp6I | CCWGG | 1 cut(s) | 1485 |
| PspGI | CCWGG | 1 cut(s) | 1485 |
| PspN4I | GGNNCC | 3 cut(s) | 870, 1510, 1582 |
| PspPI | GGNCC | 3 cut(s) | 868, 1231, 1871 |
| PspPPI | RGGWCCY | 2 cut(s) | 868, 1871 |
| PstI | CTGCAG | 1 cut(s) | 58 |
| PstNI | CAGNNNCTG | 2 cut(s) | 47, 371 |
| PsuI | RGATCY | 1 cut(s) | 1500 |
| PsyI | GACNNNGTC | 1 cut(s) | 1443 |
| RsaI | GTAC | 2 cut(s) | 331, 1467 |
| RsaNI | GTAC | 2 cut(s) | 330, 1466 |
| SacI | GAGCTC | 1 cut(s) | 787 |
| SapI | GCTCTTC | 1 cut(s) | 831 |
| Sau3AI | GATC | 5 cut(s) | 1246, 1360, 1500, 1648, 1657 |
| Sau96I | GGNCC | 3 cut(s) | 868, 1231, 1871 |
| SchI | GAGTC | 9 cut(s) | 245, 356, 368, 377, 458, 719, 821, 952, 968 |
| ScrFI | CCNGG | 2 cut(s) | 1487, 1890 |
| SduI | GDGCHC | 2 cut(s) | 787, 1513 |
| SfaNI | GCATC | 4 cut(s) | 403, 985, 1291, 1612 |
| SfcI | CTRYAG | 1 cut(s) | 54 |
| SfoI | GGCGCC | 1 cut(s) | 1582 |
| SinI | GGWCC | 3 cut(s) | 868, 1231, 1871 |
| SmlI | CTYRAG | 1 cut(s) | 528 |
| SmoI | CTYRAG | 1 cut(s) | 528 |
| Sse9I | AATT | 5 cut(s) | 520, 1093, 1162, 1199, 1458 |
| SsiI | CCGC | 5 cut(s) | 197, 1349, 1407, 1619, 1795 |
| SspDI | GGCGCC | 1 cut(s) | 1580 |
| SspMI | CTAG | 3 cut(s) | 588, 1875, 1880 |
| SstI | GAGCTC | 1 cut(s) | 787 |
| StyD4I | CCNGG | 2 cut(s) | 1485, 1888 |
| StyI | CCWWGG | 1 cut(s) | 1587 |
| TaaI | ACNGT | 4 cut(s) | 289, 433, 461, 1034 |
| TaqI | TCGA | 3 cut(s) | 111, 1756, 1768 |
| TasI | AATT | 5 cut(s) | 520, 1093, 1162, 1199, 1458 |
| TauI | GCSGC | 3 cut(s) | 199, 1410, 1797 |
| TscAI | CASTG | 3 cut(s) | 126, 724, 1297 |
| TseFI | GTSAC | 3 cut(s) | 719, 824, 1449 |
| Tsp45I | GTSAC | 3 cut(s) | 719, 824, 1449 |
| TspDTI | ATGAA | 9 cut(s) | 120, 240, 402, 459, 627, 849, 948, 1036, 1587 |
| TspGWI | ACGGA | 1 cut(s) | 1223 |
| TspRI | CASTG | 3 cut(s) | 126, 724, 1297 |
| Tth111I | GACNNNGTC | 1 cut(s) | 1443 |
| VpaK11BI | GGWCC | 3 cut(s) | 868, 1231, 1871 |
| XapI | RAATTY | 3 cut(s) | 520, 1093, 1199 |
| XceI | RCATGY | 1 cut(s) | 1280 |
| XspI | CTAG | 3 cut(s) | 588, 1875, 1880 |