Rw4G037150

RNA recognition motif

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr4
Physical Location & Seq
Forward (+)
63872824 .. 63877089
4266 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw4G037150.1

Sequence Viewer

Length: 1842 bp
ATGGGCAAGTCAAGCAAGAAGTCAGCCACCAAAGTTGAAGCAGCTCCTGCTGCTGTAGTTCCAGTCTCCAAGTCTGGCAAGAAAGGCAAGAGGGAAGCCGATAATGAAATCGAGAAGGCAGTGAGTGCGAAGAAGCAGAAGAGAGACGAGGGTGTGGTGCAGGCCATCCAGAAGACGAAGGCCGAAGCGAAGACGCCGCAAAAGAAGAAGAAAGAAGAGAGCAGTAGTGAGGAGGAGTCTGACACTTCTTCATCAGAGGATGAGAAGCCTGCTCCTAAAACCAAAACTGTTGTTCCTCCCAAGAAGCAGGCCATAGTTGCTAAGAATGGTACTGCCAAGAAGGAAGAGTCCAGCAGTTCTGAATCAGAGTCTGACTCTGATGAGGATGAAAAACCTGCTACCAAAACTGGAGATGCTGCTAAAAACGGGACAGTTGCTAAGAAAGCCGAGTCTTCTGACAGTTCAGATTCTTCAGAAGATGATTCCGATGAGGATGATGTTCCTAAATCCAAAGCCACAAAATTGCCTCAAGTTGTGGCTAAGAATGGCAAGAAAAAAGAGGATTCCAGCTCCTCAGATACAGATTCTAGTGATGATTCAGAGGATGATGATGAAACTCCTGCTAAGGTTACTGCACCTATGAAGAAGGTTGTTGCTCCTGCTGCAAAGAAGCCTGATTCAAGCAGCTCTGAAGATGATTCTGATGATGAGGATCCCAGTGACGACTCATCTGATGATTCAGAGGAAGAAAAGCCAAAGAATGCTAAACCTGCTGCTAAAAGAGCTCAACCATCAAAGAGTGAGAGTGAGAGTGAGAGTGAGAGTGACTCTGATGAAGAGCCACAAACTAAAAAACCAAAGGCCGAGGTCCCTGCTAAAGCTGCCCCAAAGGAAAGTAGTTCAGAGGAGGAGAGTGATGAGGATAGTTCAGATGAAGAATCAGAAGAAGAGGCAAAGACTCCAAAGAAAAAGGACTCTGATGTAGAGATGGTAGATGCTCAATCAAAATCCGAAAAGAAAGCTCCTAAAACCCCTGCTACTCCTGAAACATCGTCGTCTAAGACTTTGTTTGCCGGCAATTTGTCATTCAAGATTCAACAAAGTGATGTGGAAGAATTCTTCAAGGATGTTGCCCAAGTTGTTGAGGTCCGTTTCTCCTCTGATCAAGATGGACAGTTCAGGGGATATGGACATGTAGAGTTTGCCAGTGCAGAAGATGCCCAAAAGGCTCTGGAGTTGAATGGTTCAGATTTGTTGGGTCGTGCGGTGAGACTTGATCTGGCTCGTGAAAGGGGCGAAAGGGGTGCTTATACTCCTCACAGCGGCAAAGAGAGCAACTCATATCAGAAGGGAGGACAAGGTCAGTCACAGACAATTTTTGTACGAGGATTTGATACAAACCAAGGGGAGGACGAGATCCGAGGTGCCCTGCAAAGTCATTTTGCTTCGTGTGGAGAGATAACACGGGTGTCCATCCCAAAAGATTATGAAACTGGCGCCTCCAAGGGGATGGCCTACATGGACTTCTCATCTGCGGATGCTTTCAGCAAAGCTTTGGAGCTTGATCAAAGTGATCTTGGAAATAGCTGTTATTTGAATGTCCAACCGGCCAAACCTAAAGGTGATTTTGGAGAGAGGAATTCTGGTGTTCGTTTTGATAATGGTGGCCGTCGAGGTGGCCGTCGAGGTGGCCGTTATGAGAGTGGTGGCCGCCGTGGTGGCCGTTATGAGAGTGGTGGCCGCCGTGGTGGTAGGGAATCTGGTGGTAGGCGTGGAGGGAGAGGTCCTAGCCTAGCTACTCCGGGAACAGGGAAGAAGACCACCTTCAATGACGAGGATTAG

Protein Analysis

613

Amino Acids

65.53

Weight (kDa)

5.0

Isoelectric Point (pI)

59.67

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RRM_1 PF00076 356 - 423 2.9e-15 RNA recognition motif
RRM_1 PF00076 459 - 529 3.5e-09 RNA recognition motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 403, 778
AccB1I GGYRCC 2 cut(s) 1424, 1496
AciI CCGC 6 cut(s) 197, 1265, 1323, 1535, 1711, 1741
AclWI GGATC 3 cut(s) 707, 720, 1411
AcoI YGGCCR 7 cut(s) 1608, 1666, 1678, 1690, 1708, 1720, 1738
AcsI RAATTY 2 cut(s) 1115, 1639
AcuI CTGAAG 2 cut(s) 456, 711
AcyI GRCGYC 2 cut(s) 194, 1497
AfaI GTAC 2 cut(s) 331, 1383
AfiI CCNNNNNNNGG 4 cut(s) 1322, 1408, 1506, 1808
AflIII ACRYGT 1 cut(s) 1192
AgsI TTSAA 8 cut(s) 38, 681, 1090, 1097, 1123, 1240, 1597, 1828
Alw21I GWGCWC 1 cut(s) 787
Alw26I GTCTC 3 cut(s) 70, 138, 1264
AlwI GGATC 3 cut(s) 707, 720, 1411
AlwNI CAGNNNCTG 2 cut(s) 47, 371
ApeKI GCWGC 7 cut(s) 41, 50, 416, 662, 684, 773, 881
ApoI RAATTY 2 cut(s) 1115, 1639
AspLEI GCGC 1 cut(s) 1499
AspS9I GGNCC 3 cut(s) 868, 1147, 1784
AsuC2I CCSGG 1 cut(s) 1803
AsuHPI GGTGA 2 cut(s) 1279, 1634
AvaII GGWCC 3 cut(s) 868, 1147, 1784
BaeGI GKGCMC 1 cut(s) 1429
BamHI GGATCC 1 cut(s) 712
BanI GGYRCC 2 cut(s) 1424, 1496
BanII GRGCYC 1 cut(s) 787
BauI CACGAG 1 cut(s) 1284
BbsI GAAGAC 4 cut(s) 179, 197, 444, 1823
Bbv12I GWGCWC 1 cut(s) 787
BbvI GCAGC 7 cut(s) 37, 53, 403, 649, 696, 760, 868
BccI CCATC 6 cut(s) 173, 799, 982, 1163, 1481, 1504
BceAI ACGGC 6 cut(s) 1653, 1665, 1677, 1698, 1707, 1728
BcgI CGANNNNNNTGC 4 cut(s) 854, 888, 1286, 1320
BclI TGATCA 2 cut(s) 1162, 1564
BcnI CCSGG 1 cut(s) 1803
BcoDI GTCTC 3 cut(s) 70, 138, 1264
BfaI CTAG 3 cut(s) 588, 1788, 1793
BfmI CTRYAG 1 cut(s) 54
BfoI RGCGCY 1 cut(s) 1500
BfuAI ACCTGC 2 cut(s) 403, 778
BglI GCCNNNNNGGC 2 cut(s) 1226, 1719
Bme1390I CCNGG 1 cut(s) 1803
Bme18I GGWCC 3 cut(s) 868, 1147, 1784
BmgT120I GGNCC 3 cut(s) 868, 1147, 1784
BmiI GGNNCC 4 cut(s) 714, 870, 1426, 1498
BmrFI CCNGG 1 cut(s) 1803
BmrI ACTGGG 1 cut(s) 711
BmsI GCATC 4 cut(s) 403, 985, 1207, 1528
BmuI ACTGGG 1 cut(s) 711
BpiI GAAGAC 4 cut(s) 179, 197, 444, 1823
BplI GAGNNNNNCTC 6 cut(s) 359, 391, 812, 844, 1322, 1354
BpmI CTGGAG 2 cut(s) 429, 1253
Bpu10I CCTNAGC 1 cut(s) 624
BpuEI CTTGAG 1 cut(s) 513
BpuMI CCSGG 1 cut(s) 1803
BsaBI GATNNNNATC 1 cut(s) 711
BsaHI GRCGYC 2 cut(s) 194, 1497
BsaJI CCNNGG 6 cut(s) 864, 1402, 1420, 1503, 1714, 1744
Bsc4I CCNNNNNNNGG 4 cut(s) 1322, 1408, 1506, 1808
Bse118I RCCGGY 2 cut(s) 1073, 1606
Bse1I ACTGG 5 cut(s) 62, 412, 717, 1206, 1498
Bse8I GATNNNNATC 1 cut(s) 711
BseDI CCNNGG 6 cut(s) 864, 1402, 1420, 1503, 1714, 1744
BseGI GGATG 9 cut(s) 165, 265, 391, 499, 610, 1132, 1473, 1515, 1543
BseJI GATNNNNATC 1 cut(s) 711
BseLI CCNNNNNNNGG 4 cut(s) 1322, 1408, 1506, 1808
BseMII CTCAG 1 cut(s) 588
BseNI ACTGG 5 cut(s) 62, 412, 717, 1206, 1498
BseRI GAGGAG 7 cut(s) 245, 248, 562, 920, 923, 1147, 1305
BseSI GKGCMC 1 cut(s) 1429
BseXI GCAGC 7 cut(s) 37, 53, 403, 649, 696, 760, 868
BsgI GTGCAG 3 cut(s) 179, 618, 1230
BshNI GGYRCC 2 cut(s) 1424, 1496
BsiHKAI GWGCWC 1 cut(s) 787
BsiSI CCGG 3 cut(s) 1074, 1607, 1802
BslFI GGGAC 2 cut(s) 442, 854
BslI CCNNNNNNNGG 4 cut(s) 1322, 1408, 1506, 1808
BsmAI GTCTC 3 cut(s) 70, 138, 1264
BsmBI CGTCTC 1 cut(s) 138
BsmFI GGGAC 2 cut(s) 442, 854
BsmI GAATGC 1 cut(s) 766
Bsp1286I GDGCHC 2 cut(s) 787, 1429
Bsp143I GATC 6 cut(s) 712, 1162, 1276, 1416, 1564, 1573
BspACI CCGC 6 cut(s) 197, 1265, 1323, 1535, 1711, 1741
BspCNI CTCAG 1 cut(s) 587
BspLI GGNNCC 4 cut(s) 714, 870, 1426, 1498
BspMI ACCTGC 2 cut(s) 403, 778
BspPI GGATC 3 cut(s) 707, 720, 1411
BspQI GCTCTTC 1 cut(s) 831
BspT107I GGYRCC 2 cut(s) 1424, 1496
BsrFI RCCGGY 2 cut(s) 1073, 1606
BsrI ACTGG 5 cut(s) 62, 412, 717, 1206, 1498
BssAI RCCGGY 2 cut(s) 1073, 1606
BssECI CCNNGG 6 cut(s) 864, 1402, 1420, 1503, 1714, 1744
BssMI GATC 6 cut(s) 712, 1162, 1276, 1416, 1564, 1573
BssNI GRCGYC 2 cut(s) 194, 1497
BssSI CACGAG 1 cut(s) 1284
BssT1I CCWWGG 2 cut(s) 1402, 1503
Bst2BI CACGAG 1 cut(s) 1284
Bst4CI ACNGT 4 cut(s) 289, 433, 461, 1176
Bst6I CTCTTC 5 cut(s) 134, 210, 339, 831, 942
BstACI GRCGYC 2 cut(s) 194, 1497
BstAPI GCANNNNNTGC 3 cut(s) 47, 125, 1217
BstC8I GCNNGC 4 cut(s) 162, 270, 309, 1075
BstDEI CTNAG 6 cut(s) 321, 438, 540, 574, 624, 1059
BstDSI CCRYGG 2 cut(s) 1714, 1744
BstF5I GGATG 9 cut(s) 165, 265, 391, 499, 610, 1132, 1473, 1515, 1543
BstH2I RGCGCY 1 cut(s) 1500
BstHHI GCGC 1 cut(s) 1499
BstKTI GATC 6 cut(s) 715, 1165, 1279, 1419, 1567, 1576
BstMAI GTCTC 3 cut(s) 70, 138, 1264
BstMBI GATC 6 cut(s) 712, 1162, 1276, 1416, 1564, 1573
BstNSI RCATGY 1 cut(s) 1196
BstSCI CCNGG 1 cut(s) 1801
BstSFI CTRYAG 1 cut(s) 54
BstSLI GKGCMC 1 cut(s) 1429
BstV1I GCAGC 7 cut(s) 37, 53, 403, 649, 696, 760, 868
BstV2I GAAGAC 4 cut(s) 179, 197, 444, 1823
BstX2I RGATCY 2 cut(s) 712, 1416
BstXI CCANNNNNNTGG 1 cut(s) 1510
BstYI RGATCY 2 cut(s) 712, 1416
BtgI CCRYGG 2 cut(s) 1714, 1744
BtsCI GGATG 9 cut(s) 165, 265, 391, 499, 610, 1132, 1473, 1515, 1543
BtsI GCAGTG 1 cut(s) 126
BtsIMutI CAGTG 3 cut(s) 126, 724, 1213
BveI ACCTGC 2 cut(s) 403, 778
Cac8I GCNNGC 4 cut(s) 162, 270, 309, 1075
CaiI CAGNNNCTG 2 cut(s) 47, 371
CfoI GCGC 1 cut(s) 1499
Cfr10I RCCGGY 2 cut(s) 1073, 1606
Cfr13I GGNCC 3 cut(s) 868, 1147, 1784
CseI GACGC 1 cut(s) 202
Csp6I GTAC 2 cut(s) 330, 1382
CspCI CAANNNNNGTGG 2 cut(s) 16, 51
CviAII CATG 2 cut(s) 1193, 1519
CviQI GTAC 2 cut(s) 330, 1382
DdeI CTNAG 6 cut(s) 321, 438, 540, 574, 624, 1059
DinI GGCGCC 1 cut(s) 1498
DpnI GATC 6 cut(s) 714, 1164, 1278, 1418, 1566, 1575
DpnII GATC 6 cut(s) 712, 1162, 1276, 1416, 1564, 1573
EaeI YGGCCR 7 cut(s) 1608, 1666, 1678, 1690, 1708, 1720, 1738
Eam1104I CTCTTC 5 cut(s) 134, 210, 339, 831, 942
EarI CTCTTC 5 cut(s) 134, 210, 339, 831, 942
Ecl136II GAGCTC 1 cut(s) 785
Eco130I CCWWGG 2 cut(s) 1402, 1503
Eco24I GRGCYC 1 cut(s) 787
Eco47I GGWCC 3 cut(s) 868, 1147, 1784
Eco53kI GAGCTC 1 cut(s) 785
Eco57I CTGAAG 2 cut(s) 456, 711
EcoICRI GAGCTC 1 cut(s) 785
EcoO109I RGGNCCY 2 cut(s) 868, 1784
EcoRI GAATTC 2 cut(s) 1115, 1639
EcoT14I CCWWGG 2 cut(s) 1402, 1503
EcoT38I GRGCYC 1 cut(s) 787
EgeI GGCGCC 1 cut(s) 1498
EheI GGCGCC 1 cut(s) 1498
ErhI CCWWGG 2 cut(s) 1402, 1503
Esp3I CGTCTC 1 cut(s) 138
FaeI CATG 2 cut(s) 1196, 1522
FalI AAGNNNNNCTT 4 cut(s) 1291, 1323, 1808, 1840
FaqI GGGAC 2 cut(s) 442, 854
FatI CATG 2 cut(s) 1192, 1518
FbaI TGATCA 2 cut(s) 1162, 1564
FokI GGATG 9 cut(s) 152, 272, 398, 506, 617, 1139, 1460, 1522, 1550
FriOI GRGCYC 1 cut(s) 787
FspBI CTAG 3 cut(s) 588, 1788, 1793
GlaI GCGC 1 cut(s) 1498
GsuI CTGGAG 2 cut(s) 429, 1253
HaeII RGCGCY 1 cut(s) 1500
HapII CCGG 3 cut(s) 1074, 1607, 1802
HgaI GACGC 1 cut(s) 202
HhaI GCGC 1 cut(s) 1499
Hin1I GRCGYC 2 cut(s) 194, 1497
Hin1II CATG 2 cut(s) 1196, 1522
Hin6I GCGC 1 cut(s) 1497
HinP1I GCGC 1 cut(s) 1497
HindIII AAGCTT 1 cut(s) 1551
HpaII CCGG 3 cut(s) 1074, 1607, 1802
HphI GGTGA 2 cut(s) 1279, 1634
Hpy188III TCNNGA 7 cut(s) 112, 169, 1043, 1090, 1166, 1232, 1286
Hpy99I CGWCG 3 cut(s) 1057, 1674, 1686
HpyAV CCTTC 6 cut(s) 109, 172, 334, 640, 1342, 1834
HpyCH4III ACNGT 4 cut(s) 289, 433, 461, 1176
HpyCH4V TGCA 5 cut(s) 160, 635, 665, 1211, 1432
HpyF3I CTNAG 6 cut(s) 321, 438, 540, 574, 624, 1059
Hsp92I GRCGYC 2 cut(s) 194, 1497
Hsp92II CATG 2 cut(s) 1196, 1522
HspAI GCGC 1 cut(s) 1497
KasI GGCGCC 1 cut(s) 1496
KroI GCCGGC 1 cut(s) 1073
KroNI GCCGGC 1 cut(s) 1075
Ksp22I TGATCA 2 cut(s) 1162, 1564
Kzo9I GATC 6 cut(s) 712, 1162, 1276, 1416, 1564, 1573
LguI GCTCTTC 1 cut(s) 831
LmnI GCTCC 6 cut(s) 49, 277, 575, 661, 1027, 1558
Lsp1109I GCAGC 7 cut(s) 37, 53, 403, 649, 696, 760, 868
LweI GCATC 4 cut(s) 403, 985, 1207, 1528
MaeI CTAG 3 cut(s) 588, 1788, 1793
MaeIII GTNAC 4 cut(s) 628, 719, 824, 1365
MalI GATC 6 cut(s) 714, 1164, 1278, 1418, 1566, 1575
MboI GATC 6 cut(s) 712, 1162, 1276, 1416, 1564, 1573
MflI RGATCY 2 cut(s) 712, 1416
MhlI GDGCHC 2 cut(s) 787, 1429
MluCI AATT 5 cut(s) 521, 1078, 1115, 1374, 1639
Mly113I GGCGCC 1 cut(s) 1497
MlyI GAGTC 9 cut(s) 245, 356, 368, 377, 458, 719, 821, 952, 968
MmeI TCCRAC 1 cut(s) 1627
MroNI GCCGGC 1 cut(s) 1073
MspA1I CMGCKG 1 cut(s) 1323
MspI CCGG 3 cut(s) 1074, 1607, 1802
MspR9I CCNGG 1 cut(s) 1803
Mva1269I GAATGC 1 cut(s) 766
NaeI GCCGGC 1 cut(s) 1075
NarI GGCGCC 1 cut(s) 1497
NciI CCSGG 1 cut(s) 1803
NdeII GATC 6 cut(s) 712, 1162, 1276, 1416, 1564, 1573
NgoMIV GCCGGC 1 cut(s) 1073
NlaIII CATG 2 cut(s) 1196, 1522
NlaIV GGNNCC 4 cut(s) 714, 870, 1426, 1498
NmeAIII GCCGAG 2 cut(s) 472, 889
NmuCI GTSAC 3 cut(s) 719, 824, 1365
NspI RCATGY 1 cut(s) 1196
PciI ACATGT 1 cut(s) 1192
PciSI GCTCTTC 1 cut(s) 831
PcsI WCGNNNNNNNCGW 2 cut(s) 1678, 1690
PctI GAATGC 1 cut(s) 766
PdiI GCCGGC 1 cut(s) 1075
PflFI GACNNNGTC 1 cut(s) 1359
PfoI TCCNGGA 1 cut(s) 1801
PleI GAGTC 9 cut(s) 244, 355, 368, 376, 457, 719, 821, 952, 968
PluTI GGCGCC 1 cut(s) 1500
PpsI GAGTC 9 cut(s) 244, 355, 368, 376, 457, 719, 821, 952, 968
PpuMI RGGWCCY 2 cut(s) 868, 1784
PscI ACATGT 1 cut(s) 1192
Psp124BI GAGCTC 1 cut(s) 787
Psp5II RGGWCCY 2 cut(s) 868, 1784
PspN4I GGNNCC 4 cut(s) 714, 870, 1426, 1498
PspPI GGNCC 3 cut(s) 868, 1147, 1784
PspPPI RGGWCCY 2 cut(s) 868, 1784
PstNI CAGNNNCTG 2 cut(s) 47, 371
PsuI RGATCY 2 cut(s) 712, 1416
PsyI GACNNNGTC 1 cut(s) 1359
RsaI GTAC 2 cut(s) 331, 1383
RsaNI GTAC 2 cut(s) 330, 1382
SacI GAGCTC 1 cut(s) 787
SapI GCTCTTC 1 cut(s) 831
Sau3AI GATC 6 cut(s) 712, 1162, 1276, 1416, 1564, 1573
Sau96I GGNCC 3 cut(s) 868, 1147, 1784
SchI GAGTC 9 cut(s) 245, 356, 368, 377, 458, 719, 821, 952, 968
ScrFI CCNGG 1 cut(s) 1803
SduI GDGCHC 2 cut(s) 787, 1429
SfaNI GCATC 4 cut(s) 403, 985, 1207, 1528
SfcI CTRYAG 1 cut(s) 54
SfoI GGCGCC 1 cut(s) 1498
SinI GGWCC 3 cut(s) 868, 1147, 1784
SmlI CTYRAG 1 cut(s) 528
SmoI CTYRAG 1 cut(s) 528
Sse9I AATT 5 cut(s) 521, 1078, 1115, 1374, 1639
SsiI CCGC 6 cut(s) 197, 1265, 1323, 1535, 1711, 1741
SspDI GGCGCC 1 cut(s) 1496
SspMI CTAG 3 cut(s) 588, 1788, 1793
SstI GAGCTC 1 cut(s) 787
StyD4I CCNGG 1 cut(s) 1801
StyI CCWWGG 2 cut(s) 1402, 1503
TaaI ACNGT 4 cut(s) 289, 433, 461, 1176
TaqI TCGA 3 cut(s) 111, 1672, 1684
TasI AATT 5 cut(s) 521, 1078, 1115, 1374, 1639
TauI GCSGC 4 cut(s) 199, 1326, 1713, 1743
TscAI CASTG 3 cut(s) 126, 724, 1213
TseFI GTSAC 3 cut(s) 719, 824, 1365
TseI GCWGC 7 cut(s) 41, 50, 416, 662, 684, 773, 881
Tsp45I GTSAC 3 cut(s) 719, 824, 1365
TspDTI ATGAA 8 cut(s) 120, 240, 402, 627, 656, 849, 948, 1503
TspGWI ACGGA 1 cut(s) 1139
TspRI CASTG 3 cut(s) 126, 724, 1213
Tth111I GACNNNGTC 1 cut(s) 1359
VpaK11BI GGWCC 3 cut(s) 868, 1147, 1784
XapI RAATTY 2 cut(s) 1115, 1639
XceI RCATGY 1 cut(s) 1196
XspI CTAG 3 cut(s) 588, 1788, 1793
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.