RNA recognition motif
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT4G08760 |
| fragaria_vesca | FvH4_4g36861 FvH4_4g36861 FvH4_4g36861 FvH4_4g36861 FvH4_5g39267 FvH4_5g39267 FvH4_5g39267 FvH4_5g39267 FvH4_5g39267 FvH4_5g39267 |
| rosa_chinensis | RchiOBHm_Chr4g0446621 |
| rosa_laevigata | RLG00000005644 |
| rosa_multiflora | Rmu_co7993076.1_g000001 Rmu_sc0030348.1_g000001 |
| rosa_rugosa | Rorug04G0373200 Rorug04G0373300 Rorug04G0373400 |
| rosa_samantha | Rh4AG434600 Rh4BG443700 Rh4CG461000 Rh4DG442500 |
| rosa_wichuraiana | Rw4G037150 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 2 cut(s) | 403, 778 |
| AccB1I | GGYRCC | 2 cut(s) | 1424, 1496 |
| AciI | CCGC | 6 cut(s) | 197, 1265, 1323, 1535, 1711, 1741 |
| AclWI | GGATC | 3 cut(s) | 707, 720, 1411 |
| AcoI | YGGCCR | 7 cut(s) | 1608, 1666, 1678, 1690, 1708, 1720, 1738 |
| AcsI | RAATTY | 2 cut(s) | 1115, 1639 |
| AcuI | CTGAAG | 2 cut(s) | 456, 711 |
| AcyI | GRCGYC | 2 cut(s) | 194, 1497 |
| AfaI | GTAC | 2 cut(s) | 331, 1383 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 1322, 1408, 1506, 1808 |
| AflIII | ACRYGT | 1 cut(s) | 1192 |
| AgsI | TTSAA | 8 cut(s) | 38, 681, 1090, 1097, 1123, 1240, 1597, 1828 |
| Alw21I | GWGCWC | 1 cut(s) | 787 |
| Alw26I | GTCTC | 3 cut(s) | 70, 138, 1264 |
| AlwI | GGATC | 3 cut(s) | 707, 720, 1411 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 47, 371 |
| ApeKI | GCWGC | 7 cut(s) | 41, 50, 416, 662, 684, 773, 881 |
| ApoI | RAATTY | 2 cut(s) | 1115, 1639 |
| AspLEI | GCGC | 1 cut(s) | 1499 |
| AspS9I | GGNCC | 3 cut(s) | 868, 1147, 1784 |
| AsuC2I | CCSGG | 1 cut(s) | 1803 |
| AsuHPI | GGTGA | 2 cut(s) | 1279, 1634 |
| AvaII | GGWCC | 3 cut(s) | 868, 1147, 1784 |
| BaeGI | GKGCMC | 1 cut(s) | 1429 |
| BamHI | GGATCC | 1 cut(s) | 712 |
| BanI | GGYRCC | 2 cut(s) | 1424, 1496 |
| BanII | GRGCYC | 1 cut(s) | 787 |
| BauI | CACGAG | 1 cut(s) | 1284 |
| BbsI | GAAGAC | 4 cut(s) | 179, 197, 444, 1823 |
| Bbv12I | GWGCWC | 1 cut(s) | 787 |
| BbvI | GCAGC | 7 cut(s) | 37, 53, 403, 649, 696, 760, 868 |
| BccI | CCATC | 6 cut(s) | 173, 799, 982, 1163, 1481, 1504 |
| BceAI | ACGGC | 6 cut(s) | 1653, 1665, 1677, 1698, 1707, 1728 |
| BcgI | CGANNNNNNTGC | 4 cut(s) | 854, 888, 1286, 1320 |
| BclI | TGATCA | 2 cut(s) | 1162, 1564 |
| BcnI | CCSGG | 1 cut(s) | 1803 |
| BcoDI | GTCTC | 3 cut(s) | 70, 138, 1264 |
| BfaI | CTAG | 3 cut(s) | 588, 1788, 1793 |
| BfmI | CTRYAG | 1 cut(s) | 54 |
| BfoI | RGCGCY | 1 cut(s) | 1500 |
| BfuAI | ACCTGC | 2 cut(s) | 403, 778 |
| BglI | GCCNNNNNGGC | 2 cut(s) | 1226, 1719 |
| Bme1390I | CCNGG | 1 cut(s) | 1803 |
| Bme18I | GGWCC | 3 cut(s) | 868, 1147, 1784 |
| BmgT120I | GGNCC | 3 cut(s) | 868, 1147, 1784 |
| BmiI | GGNNCC | 4 cut(s) | 714, 870, 1426, 1498 |
| BmrFI | CCNGG | 1 cut(s) | 1803 |
| BmrI | ACTGGG | 1 cut(s) | 711 |
| BmsI | GCATC | 4 cut(s) | 403, 985, 1207, 1528 |
| BmuI | ACTGGG | 1 cut(s) | 711 |
| BpiI | GAAGAC | 4 cut(s) | 179, 197, 444, 1823 |
| BplI | GAGNNNNNCTC | 6 cut(s) | 359, 391, 812, 844, 1322, 1354 |
| BpmI | CTGGAG | 2 cut(s) | 429, 1253 |
| Bpu10I | CCTNAGC | 1 cut(s) | 624 |
| BpuEI | CTTGAG | 1 cut(s) | 513 |
| BpuMI | CCSGG | 1 cut(s) | 1803 |
| BsaBI | GATNNNNATC | 1 cut(s) | 711 |
| BsaHI | GRCGYC | 2 cut(s) | 194, 1497 |
| BsaJI | CCNNGG | 6 cut(s) | 864, 1402, 1420, 1503, 1714, 1744 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 1322, 1408, 1506, 1808 |
| Bse118I | RCCGGY | 2 cut(s) | 1073, 1606 |
| Bse1I | ACTGG | 5 cut(s) | 62, 412, 717, 1206, 1498 |
| Bse8I | GATNNNNATC | 1 cut(s) | 711 |
| BseDI | CCNNGG | 6 cut(s) | 864, 1402, 1420, 1503, 1714, 1744 |
| BseGI | GGATG | 9 cut(s) | 165, 265, 391, 499, 610, 1132, 1473, 1515, 1543 |
| BseJI | GATNNNNATC | 1 cut(s) | 711 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 1322, 1408, 1506, 1808 |
| BseMII | CTCAG | 1 cut(s) | 588 |
| BseNI | ACTGG | 5 cut(s) | 62, 412, 717, 1206, 1498 |
| BseRI | GAGGAG | 7 cut(s) | 245, 248, 562, 920, 923, 1147, 1305 |
| BseSI | GKGCMC | 1 cut(s) | 1429 |
| BseXI | GCAGC | 7 cut(s) | 37, 53, 403, 649, 696, 760, 868 |
| BsgI | GTGCAG | 3 cut(s) | 179, 618, 1230 |
| BshNI | GGYRCC | 2 cut(s) | 1424, 1496 |
| BsiHKAI | GWGCWC | 1 cut(s) | 787 |
| BsiSI | CCGG | 3 cut(s) | 1074, 1607, 1802 |
| BslFI | GGGAC | 2 cut(s) | 442, 854 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 1322, 1408, 1506, 1808 |
| BsmAI | GTCTC | 3 cut(s) | 70, 138, 1264 |
| BsmBI | CGTCTC | 1 cut(s) | 138 |
| BsmFI | GGGAC | 2 cut(s) | 442, 854 |
| BsmI | GAATGC | 1 cut(s) | 766 |
| Bsp1286I | GDGCHC | 2 cut(s) | 787, 1429 |
| Bsp143I | GATC | 6 cut(s) | 712, 1162, 1276, 1416, 1564, 1573 |
| BspACI | CCGC | 6 cut(s) | 197, 1265, 1323, 1535, 1711, 1741 |
| BspCNI | CTCAG | 1 cut(s) | 587 |
| BspLI | GGNNCC | 4 cut(s) | 714, 870, 1426, 1498 |
| BspMI | ACCTGC | 2 cut(s) | 403, 778 |
| BspPI | GGATC | 3 cut(s) | 707, 720, 1411 |
| BspQI | GCTCTTC | 1 cut(s) | 831 |
| BspT107I | GGYRCC | 2 cut(s) | 1424, 1496 |
| BsrFI | RCCGGY | 2 cut(s) | 1073, 1606 |
| BsrI | ACTGG | 5 cut(s) | 62, 412, 717, 1206, 1498 |
| BssAI | RCCGGY | 2 cut(s) | 1073, 1606 |
| BssECI | CCNNGG | 6 cut(s) | 864, 1402, 1420, 1503, 1714, 1744 |
| BssMI | GATC | 6 cut(s) | 712, 1162, 1276, 1416, 1564, 1573 |
| BssNI | GRCGYC | 2 cut(s) | 194, 1497 |
| BssSI | CACGAG | 1 cut(s) | 1284 |
| BssT1I | CCWWGG | 2 cut(s) | 1402, 1503 |
| Bst2BI | CACGAG | 1 cut(s) | 1284 |
| Bst4CI | ACNGT | 4 cut(s) | 289, 433, 461, 1176 |
| Bst6I | CTCTTC | 5 cut(s) | 134, 210, 339, 831, 942 |
| BstACI | GRCGYC | 2 cut(s) | 194, 1497 |
| BstAPI | GCANNNNNTGC | 3 cut(s) | 47, 125, 1217 |
| BstC8I | GCNNGC | 4 cut(s) | 162, 270, 309, 1075 |
| BstDEI | CTNAG | 6 cut(s) | 321, 438, 540, 574, 624, 1059 |
| BstDSI | CCRYGG | 2 cut(s) | 1714, 1744 |
| BstF5I | GGATG | 9 cut(s) | 165, 265, 391, 499, 610, 1132, 1473, 1515, 1543 |
| BstH2I | RGCGCY | 1 cut(s) | 1500 |
| BstHHI | GCGC | 1 cut(s) | 1499 |
| BstKTI | GATC | 6 cut(s) | 715, 1165, 1279, 1419, 1567, 1576 |
| BstMAI | GTCTC | 3 cut(s) | 70, 138, 1264 |
| BstMBI | GATC | 6 cut(s) | 712, 1162, 1276, 1416, 1564, 1573 |
| BstNSI | RCATGY | 1 cut(s) | 1196 |
| BstSCI | CCNGG | 1 cut(s) | 1801 |
| BstSFI | CTRYAG | 1 cut(s) | 54 |
| BstSLI | GKGCMC | 1 cut(s) | 1429 |
| BstV1I | GCAGC | 7 cut(s) | 37, 53, 403, 649, 696, 760, 868 |
| BstV2I | GAAGAC | 4 cut(s) | 179, 197, 444, 1823 |
| BstX2I | RGATCY | 2 cut(s) | 712, 1416 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 1510 |
| BstYI | RGATCY | 2 cut(s) | 712, 1416 |
| BtgI | CCRYGG | 2 cut(s) | 1714, 1744 |
| BtsCI | GGATG | 9 cut(s) | 165, 265, 391, 499, 610, 1132, 1473, 1515, 1543 |
| BtsI | GCAGTG | 1 cut(s) | 126 |
| BtsIMutI | CAGTG | 3 cut(s) | 126, 724, 1213 |
| BveI | ACCTGC | 2 cut(s) | 403, 778 |
| Cac8I | GCNNGC | 4 cut(s) | 162, 270, 309, 1075 |
| CaiI | CAGNNNCTG | 2 cut(s) | 47, 371 |
| CfoI | GCGC | 1 cut(s) | 1499 |
| Cfr10I | RCCGGY | 2 cut(s) | 1073, 1606 |
| Cfr13I | GGNCC | 3 cut(s) | 868, 1147, 1784 |
| CseI | GACGC | 1 cut(s) | 202 |
| Csp6I | GTAC | 2 cut(s) | 330, 1382 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 16, 51 |
| CviAII | CATG | 2 cut(s) | 1193, 1519 |
| CviQI | GTAC | 2 cut(s) | 330, 1382 |
| DdeI | CTNAG | 6 cut(s) | 321, 438, 540, 574, 624, 1059 |
| DinI | GGCGCC | 1 cut(s) | 1498 |
| DpnI | GATC | 6 cut(s) | 714, 1164, 1278, 1418, 1566, 1575 |
| DpnII | GATC | 6 cut(s) | 712, 1162, 1276, 1416, 1564, 1573 |
| EaeI | YGGCCR | 7 cut(s) | 1608, 1666, 1678, 1690, 1708, 1720, 1738 |
| Eam1104I | CTCTTC | 5 cut(s) | 134, 210, 339, 831, 942 |
| EarI | CTCTTC | 5 cut(s) | 134, 210, 339, 831, 942 |
| Ecl136II | GAGCTC | 1 cut(s) | 785 |
| Eco130I | CCWWGG | 2 cut(s) | 1402, 1503 |
| Eco24I | GRGCYC | 1 cut(s) | 787 |
| Eco47I | GGWCC | 3 cut(s) | 868, 1147, 1784 |
| Eco53kI | GAGCTC | 1 cut(s) | 785 |
| Eco57I | CTGAAG | 2 cut(s) | 456, 711 |
| EcoICRI | GAGCTC | 1 cut(s) | 785 |
| EcoO109I | RGGNCCY | 2 cut(s) | 868, 1784 |
| EcoRI | GAATTC | 2 cut(s) | 1115, 1639 |
| EcoT14I | CCWWGG | 2 cut(s) | 1402, 1503 |
| EcoT38I | GRGCYC | 1 cut(s) | 787 |
| EgeI | GGCGCC | 1 cut(s) | 1498 |
| EheI | GGCGCC | 1 cut(s) | 1498 |
| ErhI | CCWWGG | 2 cut(s) | 1402, 1503 |
| Esp3I | CGTCTC | 1 cut(s) | 138 |
| FaeI | CATG | 2 cut(s) | 1196, 1522 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 1291, 1323, 1808, 1840 |
| FaqI | GGGAC | 2 cut(s) | 442, 854 |
| FatI | CATG | 2 cut(s) | 1192, 1518 |
| FbaI | TGATCA | 2 cut(s) | 1162, 1564 |
| FokI | GGATG | 9 cut(s) | 152, 272, 398, 506, 617, 1139, 1460, 1522, 1550 |
| FriOI | GRGCYC | 1 cut(s) | 787 |
| FspBI | CTAG | 3 cut(s) | 588, 1788, 1793 |
| GlaI | GCGC | 1 cut(s) | 1498 |
| GsuI | CTGGAG | 2 cut(s) | 429, 1253 |
| HaeII | RGCGCY | 1 cut(s) | 1500 |
| HapII | CCGG | 3 cut(s) | 1074, 1607, 1802 |
| HgaI | GACGC | 1 cut(s) | 202 |
| HhaI | GCGC | 1 cut(s) | 1499 |
| Hin1I | GRCGYC | 2 cut(s) | 194, 1497 |
| Hin1II | CATG | 2 cut(s) | 1196, 1522 |
| Hin6I | GCGC | 1 cut(s) | 1497 |
| HinP1I | GCGC | 1 cut(s) | 1497 |
| HindIII | AAGCTT | 1 cut(s) | 1551 |
| HpaII | CCGG | 3 cut(s) | 1074, 1607, 1802 |
| HphI | GGTGA | 2 cut(s) | 1279, 1634 |
| Hpy188III | TCNNGA | 7 cut(s) | 112, 169, 1043, 1090, 1166, 1232, 1286 |
| Hpy99I | CGWCG | 3 cut(s) | 1057, 1674, 1686 |
| HpyAV | CCTTC | 6 cut(s) | 109, 172, 334, 640, 1342, 1834 |
| HpyCH4III | ACNGT | 4 cut(s) | 289, 433, 461, 1176 |
| HpyCH4V | TGCA | 5 cut(s) | 160, 635, 665, 1211, 1432 |
| HpyF3I | CTNAG | 6 cut(s) | 321, 438, 540, 574, 624, 1059 |
| Hsp92I | GRCGYC | 2 cut(s) | 194, 1497 |
| Hsp92II | CATG | 2 cut(s) | 1196, 1522 |
| HspAI | GCGC | 1 cut(s) | 1497 |
| KasI | GGCGCC | 1 cut(s) | 1496 |
| KroI | GCCGGC | 1 cut(s) | 1073 |
| KroNI | GCCGGC | 1 cut(s) | 1075 |
| Ksp22I | TGATCA | 2 cut(s) | 1162, 1564 |
| Kzo9I | GATC | 6 cut(s) | 712, 1162, 1276, 1416, 1564, 1573 |
| LguI | GCTCTTC | 1 cut(s) | 831 |
| LmnI | GCTCC | 6 cut(s) | 49, 277, 575, 661, 1027, 1558 |
| Lsp1109I | GCAGC | 7 cut(s) | 37, 53, 403, 649, 696, 760, 868 |
| LweI | GCATC | 4 cut(s) | 403, 985, 1207, 1528 |
| MaeI | CTAG | 3 cut(s) | 588, 1788, 1793 |
| MaeIII | GTNAC | 4 cut(s) | 628, 719, 824, 1365 |
| MalI | GATC | 6 cut(s) | 714, 1164, 1278, 1418, 1566, 1575 |
| MboI | GATC | 6 cut(s) | 712, 1162, 1276, 1416, 1564, 1573 |
| MflI | RGATCY | 2 cut(s) | 712, 1416 |
| MhlI | GDGCHC | 2 cut(s) | 787, 1429 |
| MluCI | AATT | 5 cut(s) | 521, 1078, 1115, 1374, 1639 |
| Mly113I | GGCGCC | 1 cut(s) | 1497 |
| MlyI | GAGTC | 9 cut(s) | 245, 356, 368, 377, 458, 719, 821, 952, 968 |
| MmeI | TCCRAC | 1 cut(s) | 1627 |
| MroNI | GCCGGC | 1 cut(s) | 1073 |
| MspA1I | CMGCKG | 1 cut(s) | 1323 |
| MspI | CCGG | 3 cut(s) | 1074, 1607, 1802 |
| MspR9I | CCNGG | 1 cut(s) | 1803 |
| Mva1269I | GAATGC | 1 cut(s) | 766 |
| NaeI | GCCGGC | 1 cut(s) | 1075 |
| NarI | GGCGCC | 1 cut(s) | 1497 |
| NciI | CCSGG | 1 cut(s) | 1803 |
| NdeII | GATC | 6 cut(s) | 712, 1162, 1276, 1416, 1564, 1573 |
| NgoMIV | GCCGGC | 1 cut(s) | 1073 |
| NlaIII | CATG | 2 cut(s) | 1196, 1522 |
| NlaIV | GGNNCC | 4 cut(s) | 714, 870, 1426, 1498 |
| NmeAIII | GCCGAG | 2 cut(s) | 472, 889 |
| NmuCI | GTSAC | 3 cut(s) | 719, 824, 1365 |
| NspI | RCATGY | 1 cut(s) | 1196 |
| PciI | ACATGT | 1 cut(s) | 1192 |
| PciSI | GCTCTTC | 1 cut(s) | 831 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 1678, 1690 |
| PctI | GAATGC | 1 cut(s) | 766 |
| PdiI | GCCGGC | 1 cut(s) | 1075 |
| PflFI | GACNNNGTC | 1 cut(s) | 1359 |
| PfoI | TCCNGGA | 1 cut(s) | 1801 |
| PleI | GAGTC | 9 cut(s) | 244, 355, 368, 376, 457, 719, 821, 952, 968 |
| PluTI | GGCGCC | 1 cut(s) | 1500 |
| PpsI | GAGTC | 9 cut(s) | 244, 355, 368, 376, 457, 719, 821, 952, 968 |
| PpuMI | RGGWCCY | 2 cut(s) | 868, 1784 |
| PscI | ACATGT | 1 cut(s) | 1192 |
| Psp124BI | GAGCTC | 1 cut(s) | 787 |
| Psp5II | RGGWCCY | 2 cut(s) | 868, 1784 |
| PspN4I | GGNNCC | 4 cut(s) | 714, 870, 1426, 1498 |
| PspPI | GGNCC | 3 cut(s) | 868, 1147, 1784 |
| PspPPI | RGGWCCY | 2 cut(s) | 868, 1784 |
| PstNI | CAGNNNCTG | 2 cut(s) | 47, 371 |
| PsuI | RGATCY | 2 cut(s) | 712, 1416 |
| PsyI | GACNNNGTC | 1 cut(s) | 1359 |
| RsaI | GTAC | 2 cut(s) | 331, 1383 |
| RsaNI | GTAC | 2 cut(s) | 330, 1382 |
| SacI | GAGCTC | 1 cut(s) | 787 |
| SapI | GCTCTTC | 1 cut(s) | 831 |
| Sau3AI | GATC | 6 cut(s) | 712, 1162, 1276, 1416, 1564, 1573 |
| Sau96I | GGNCC | 3 cut(s) | 868, 1147, 1784 |
| SchI | GAGTC | 9 cut(s) | 245, 356, 368, 377, 458, 719, 821, 952, 968 |
| ScrFI | CCNGG | 1 cut(s) | 1803 |
| SduI | GDGCHC | 2 cut(s) | 787, 1429 |
| SfaNI | GCATC | 4 cut(s) | 403, 985, 1207, 1528 |
| SfcI | CTRYAG | 1 cut(s) | 54 |
| SfoI | GGCGCC | 1 cut(s) | 1498 |
| SinI | GGWCC | 3 cut(s) | 868, 1147, 1784 |
| SmlI | CTYRAG | 1 cut(s) | 528 |
| SmoI | CTYRAG | 1 cut(s) | 528 |
| Sse9I | AATT | 5 cut(s) | 521, 1078, 1115, 1374, 1639 |
| SsiI | CCGC | 6 cut(s) | 197, 1265, 1323, 1535, 1711, 1741 |
| SspDI | GGCGCC | 1 cut(s) | 1496 |
| SspMI | CTAG | 3 cut(s) | 588, 1788, 1793 |
| SstI | GAGCTC | 1 cut(s) | 787 |
| StyD4I | CCNGG | 1 cut(s) | 1801 |
| StyI | CCWWGG | 2 cut(s) | 1402, 1503 |
| TaaI | ACNGT | 4 cut(s) | 289, 433, 461, 1176 |
| TaqI | TCGA | 3 cut(s) | 111, 1672, 1684 |
| TasI | AATT | 5 cut(s) | 521, 1078, 1115, 1374, 1639 |
| TauI | GCSGC | 4 cut(s) | 199, 1326, 1713, 1743 |
| TscAI | CASTG | 3 cut(s) | 126, 724, 1213 |
| TseFI | GTSAC | 3 cut(s) | 719, 824, 1365 |
| TseI | GCWGC | 7 cut(s) | 41, 50, 416, 662, 684, 773, 881 |
| Tsp45I | GTSAC | 3 cut(s) | 719, 824, 1365 |
| TspDTI | ATGAA | 8 cut(s) | 120, 240, 402, 627, 656, 849, 948, 1503 |
| TspGWI | ACGGA | 1 cut(s) | 1139 |
| TspRI | CASTG | 3 cut(s) | 126, 724, 1213 |
| Tth111I | GACNNNGTC | 1 cut(s) | 1359 |
| VpaK11BI | GGWCC | 3 cut(s) | 868, 1147, 1784 |
| XapI | RAATTY | 2 cut(s) | 1115, 1639 |
| XceI | RCATGY | 1 cut(s) | 1196 |
| XspI | CTAG | 3 cut(s) | 588, 1788, 1793 |