AT4G09350

DnaJ molecular chaperone homology domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0015208
Physical Location & Seq
Reverse (-)
5931110 .. 5932475
1366 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G09350.1

Sequence Viewer

Length: 750 bp
ATGGCTTATGCAACTTCTACCTATGCACGAACCTCATGCATTATCCTACCCAAAATCCAAAACGGCGCGCATTTCACGGATGACACGAAAGCATTTAGAAGGATAACAGCAAGAAGAGTGACGCGTATATACGCGTCACAAGGCCCGACTAAACCGTCAAAACCATCTCCAGGAGTAGACACAAGAATCCACTGGGAAAGCCCGGACGAAGGCTGGATCGGAGGAAGATCCGACCCGGCCAAATCGGTTGATGAGGACAAAACCAATCTCCTTAGTGACGAAAAATTTGCAGAACTAATCAAAGACTCTTTTGATTCTCATTACCAATTCTTAGGTGTTTCAACGGATGCTGATCTAGAAGAGATAAAATCTGCGTACCGGAGATTATCTAAAGAGTATCATCCAGATACAACTTCACTACCACTTAAAACAGCTTCAGAAAAGTTCATGAAATTAAGAGAAGTGTACAATGTTTTGAGCGATGAAGAGACTCGGAGGTTTTATGACTGGACACTGGCTCAAGAAGTTGCGAGTCGTCAAGCTGAGAAAATGAGAATGAAGCTAGAGGATCCGAAAGAGCAAGATTTTAGGGGCTATGAATCAATACCTGATATGGTTGACCGGTTAGGTGGAAGAAACATGGAGCTTAGTGATCAAGCAATGACTGCTCTCACGTTCGATATTTTGATCGTATTATTCGCTGTTTGTTGTATAGCTTTTGTGATTGTTTTCAAAGATCCTTCTTACTAG

Protein Analysis

249

Amino Acids

28.5

Weight (kDa)

5.53

Isoelectric Point (pI)

43.28

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DnaJ PF00226 107 - 169 1.5e-21 DnaJ domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0015208)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G09350
fragaria_vesca FvH4_5g32300
malus_domestica MD15G1410800.v1.1
prunus_persica Prupe.1G551900_v2.0.a1
pyrus_communis pycom15g36560
rosa_chinensis RchiOBHm_Chr7g0228561
rosa_laevigata RLG00000001554
rosa_multiflora Rmu_sc0006021.1_g000007 Rmu_sc0011334.1_g000002
rosa_roxburghii Rroxscaffold_3G00231070
rosa_rugosa Rorug07G0250500.1
rosa_samantha Rh7AG402600 Rh7BG383500 Rh7CG422000 Rh7DG398400
rosa_wichuraiana Rw7G033460

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 154
AccI GTMKAC 1 cut(s) 177
AccII CGCG 3 cut(s) 68, 124, 134
AclWI GGATC 5 cut(s) 222, 224, 563, 576, 731
AcoI YGGCCR 1 cut(s) 237
AcsI RAATTY 1 cut(s) 284
AcuI CTGAAG 1 cut(s) 420
AfaI GTAC 2 cut(s) 377, 467
AfiI CCNNNNNNNGG 2 cut(s) 170, 209
AflIII ACRYGT 2 cut(s) 122, 132
AgeI ACCGGT 1 cut(s) 621
AgsI TTSAA 2 cut(s) 342, 733
AjnI CCWGG 1 cut(s) 169
AluBI AGCT 5 cut(s) 434, 542, 562, 646, 716
AluI AGCT 5 cut(s) 434, 542, 562, 646, 716
Alw26I GTCTC 1 cut(s) 482
AlwI GGATC 5 cut(s) 222, 224, 563, 576, 731
AoxI GGCC 2 cut(s) 142, 237
ApoI RAATTY 1 cut(s) 284
ArsI GACNNNNNNTTYG 2 cut(s) 269, 301
AsiGI ACCGGT 1 cut(s) 621
AspLEI GCGC 2 cut(s) 68, 70
AspS9I GGNCC 1 cut(s) 143
AsuC2I CCSGG 2 cut(s) 203, 236
BamHI GGATCC 1 cut(s) 568
BccI CCATC 1 cut(s) 172
BceAI ACGGC 1 cut(s) 79
BcgI CGANNNNNNTGC 4 cut(s) 18, 52, 269, 303
BciT130I CCWGG 1 cut(s) 171
BclI TGATCA 1 cut(s) 652
BcnI CCSGG 2 cut(s) 203, 236
BcoDI GTCTC 1 cut(s) 482
BfaI CTAG 3 cut(s) 356, 563, 748
Bme1390I CCNGG 3 cut(s) 171, 203, 236
BmgT120I GGNCC 1 cut(s) 143
BmiI GGNNCC 1 cut(s) 570
BmrFI CCNGG 3 cut(s) 171, 203, 236
BmrI ACTGGG 1 cut(s) 202
BmsI GCATC 1 cut(s) 337
BmuI ACTGGG 1 cut(s) 202
BpmI CTGGAG 1 cut(s) 153
BpuEI CTTGAG 1 cut(s) 504
BpuMI CCSGG 2 cut(s) 203, 236
BsaBI GATNNNNATC 1 cut(s) 351
BsaWI WCCGGW 2 cut(s) 378, 621
Bsc4I CCNNNNNNNGG 2 cut(s) 170, 209
Bse118I RCCGGY 1 cut(s) 621
Bse1I ACTGG 3 cut(s) 197, 512, 519
Bse3DI GCAATG 1 cut(s) 666
Bse8I GATNNNNATC 1 cut(s) 351
BseBI CCWGG 1 cut(s) 171
BseGI GGATG 3 cut(s) 85, 352, 400
BseJI GATNNNNATC 1 cut(s) 351
BseLI CCNNNNNNNGG 2 cut(s) 170, 209
BseMI GCAATG 1 cut(s) 666
BseMII CTCAG 1 cut(s) 534
BseNI ACTGG 3 cut(s) 197, 512, 519
BsePI GCGCGC 1 cut(s) 66
Bsh1236I CGCG 3 cut(s) 68, 124, 134
BshFI GGCC 2 cut(s) 144, 239
BshTI ACCGGT 1 cut(s) 621
BsiSI CCGG 4 cut(s) 203, 236, 379, 622
BslI CCNNNNNNNGG 2 cut(s) 170, 209
BsmAI GTCTC 1 cut(s) 482
BsnI GGCC 2 cut(s) 144, 239
Bsp1407I TGTACA 1 cut(s) 465
Bsp143I GATC 7 cut(s) 216, 227, 352, 568, 652, 687, 736
BspANI GGCC 2 cut(s) 144, 239
BspCNI CTCAG 1 cut(s) 535
BspFNI CGCG 3 cut(s) 68, 124, 134
BspHI TCATGA 1 cut(s) 447
BspLI GGNNCC 1 cut(s) 570
BspPI GGATC 5 cut(s) 222, 224, 563, 576, 731
BsrDI GCAATG 1 cut(s) 666
BsrFI RCCGGY 1 cut(s) 621
BsrGI TGTACA 1 cut(s) 465
BsrI ACTGG 3 cut(s) 197, 512, 519
BssAI RCCGGY 1 cut(s) 621
BssHII GCGCGC 1 cut(s) 66
BssMI GATC 7 cut(s) 216, 227, 352, 568, 652, 687, 736
Bst2UI CCWGG 1 cut(s) 171
Bst4CI ACNGT 1 cut(s) 156
Bst6I CTCTTC 3 cut(s) 109, 354, 480
BstAPI GCANNNNNTGC 1 cut(s) 665
BstAUI TGTACA 1 cut(s) 465
BstC8I GCNNGC 1 cut(s) 68
BstDEI CTNAG 4 cut(s) 272, 331, 543, 647
BstF5I GGATG 3 cut(s) 85, 352, 400
BstFNI CGCG 3 cut(s) 68, 124, 134
BstHHI GCGC 2 cut(s) 68, 70
BstKTI GATC 7 cut(s) 219, 230, 355, 571, 655, 690, 739
BstMAI GTCTC 1 cut(s) 482
BstMBI GATC 7 cut(s) 216, 227, 352, 568, 652, 687, 736
BstMWI GCNNNNNNNGC 1 cut(s) 665
BstNI CCWGG 1 cut(s) 171
BstSCI CCNGG 3 cut(s) 169, 201, 234
BstUI CGCG 3 cut(s) 68, 124, 134
BstX2I RGATCY 3 cut(s) 227, 568, 736
BstYI RGATCY 3 cut(s) 227, 568, 736
BsuRI GGCC 2 cut(s) 144, 239
BtgZI GCGATG 1 cut(s) 495
BtsCI GGATG 3 cut(s) 85, 352, 400
BtsIMutI CAGTG 2 cut(s) 190, 512
Cac8I GCNNGC 1 cut(s) 68
CciI TCATGA 1 cut(s) 447
CfoI GCGC 2 cut(s) 68, 70
Cfr10I RCCGGY 1 cut(s) 621
Cfr13I GGNCC 1 cut(s) 143
CseI GACGC 2 cut(s) 123, 130
Csp6I GTAC 2 cut(s) 376, 466
CspAI ACCGGT 1 cut(s) 621
CviAII CATG 3 cut(s) 36, 448, 640
CviQI GTAC 2 cut(s) 376, 466
DdeI CTNAG 4 cut(s) 272, 331, 543, 647
DpnI GATC 7 cut(s) 218, 229, 354, 570, 654, 689, 738
DpnII GATC 7 cut(s) 216, 227, 352, 568, 652, 687, 736
DrdI GACNNNNNNGTC 1 cut(s) 154
DseDI GACNNNNNNGTC 1 cut(s) 154
EaeI YGGCCR 1 cut(s) 237
Eam1104I CTCTTC 3 cut(s) 109, 354, 480
EarI CTCTTC 3 cut(s) 109, 354, 480
Eco57I CTGAAG 1 cut(s) 420
EcoRII CCWGG 1 cut(s) 169
EcoT22I ATGCAT 1 cut(s) 41
FaeI CATG 3 cut(s) 39, 451, 643
FatI CATG 3 cut(s) 35, 447, 639
FbaI TGATCA 1 cut(s) 652
FblI GTMKAC 1 cut(s) 177
FokI GGATG 3 cut(s) 92, 359, 387
FspBI CTAG 3 cut(s) 356, 563, 748
GlaI GCGC 2 cut(s) 67, 69
GsuI CTGGAG 1 cut(s) 153
HaeIII GGCC 2 cut(s) 144, 239
HapII CCGG 4 cut(s) 203, 236, 379, 622
HgaI GACGC 2 cut(s) 123, 130
HhaI GCGC 2 cut(s) 68, 70
Hin1II CATG 3 cut(s) 39, 451, 643
Hin6I GCGC 2 cut(s) 66, 68
HinP1I GCGC 2 cut(s) 66, 68
HincII GTYRAC 1 cut(s) 619
HindII GTYRAC 1 cut(s) 619
HinfI GANTC 6 cut(s) 186, 305, 314, 490, 532, 599
HpaII CCGG 4 cut(s) 203, 236, 379, 622
Hpy166II GTNNAC 3 cut(s) 178, 466, 619
Hpy188I TCNGA 5 cut(s) 221, 232, 439, 495, 573
Hpy188III TCNNGA 4 cut(s) 356, 404, 448, 521
Hpy8I GTNNAC 3 cut(s) 178, 466, 619
HpyAV CCTTC 3 cut(s) 93, 203, 750
HpyCH4III ACNGT 1 cut(s) 156
HpyCH4IV ACGT 1 cut(s) 674
HpyCH4V TGCA 4 cut(s) 11, 26, 39, 290
HpyF10VI GCNNNNNNNGC 1 cut(s) 665
HpyF3I CTNAG 4 cut(s) 272, 331, 543, 647
HpySE526I ACGT 1 cut(s) 674
Hsp92II CATG 3 cut(s) 39, 451, 643
HspAI GCGC 2 cut(s) 66, 68
Ksp22I TGATCA 1 cut(s) 652
Kzo9I GATC 7 cut(s) 216, 227, 352, 568, 652, 687, 736
LmnI GCTCC 1 cut(s) 643
LweI GCATC 1 cut(s) 337
MaeI CTAG 3 cut(s) 356, 563, 748
MaeII ACGT 1 cut(s) 674
MaeIII GTNAC 3 cut(s) 118, 135, 275
MalI GATC 7 cut(s) 218, 229, 354, 570, 654, 689, 738
MboI GATC 7 cut(s) 216, 227, 352, 568, 652, 687, 736
MboII GAAGA 5 cut(s) 126, 237, 371, 497, 645
MflI RGATCY 3 cut(s) 227, 568, 736
MluCI AATT 3 cut(s) 284, 326, 452
MluI ACGCGT 2 cut(s) 122, 132
MlyI GAGTC 3 cut(s) 299, 484, 541
MmeI TCCRAC 1 cut(s) 255
MnlI CCTC 5 cut(s) 43, 215, 247, 489, 559
Mph1103I ATGCAT 1 cut(s) 41
MseI TTAA 2 cut(s) 426, 455
MspI CCGG 4 cut(s) 203, 236, 379, 622
MspR9I CCNGG 3 cut(s) 171, 203, 236
MvaI CCWGG 1 cut(s) 171
MvnI CGCG 3 cut(s) 68, 124, 134
MwoI GCNNNNNNNGC 1 cut(s) 665
NciI CCSGG 2 cut(s) 203, 236
NdeII GATC 7 cut(s) 216, 227, 352, 568, 652, 687, 736
NlaIII CATG 3 cut(s) 39, 451, 643
NlaIV GGNNCC 1 cut(s) 570
NmuCI GTSAC 3 cut(s) 118, 135, 275
NsiI ATGCAT 1 cut(s) 41
PagI TCATGA 1 cut(s) 447
PauI GCGCGC 1 cut(s) 66
PcsI WCGNNNNNNNCGW 1 cut(s) 83
PfeI GAWTC 3 cut(s) 186, 314, 599
PfoI TCCNGGA 1 cut(s) 169
PinAI ACCGGT 1 cut(s) 621
PleI GAGTC 3 cut(s) 299, 484, 540
PpsI GAGTC 3 cut(s) 299, 484, 540
Psp6I CCWGG 1 cut(s) 169
PspGI CCWGG 1 cut(s) 169
PspN4I GGNNCC 1 cut(s) 570
PspPI GGNCC 1 cut(s) 143
PsuI RGATCY 3 cut(s) 227, 568, 736
PteI GCGCGC 1 cut(s) 66
RsaI GTAC 2 cut(s) 377, 467
RsaNI GTAC 2 cut(s) 376, 466
SaqAI TTAA 2 cut(s) 426, 455
Sau3AI GATC 7 cut(s) 216, 227, 352, 568, 652, 687, 736
Sau96I GGNCC 1 cut(s) 143
SchI GAGTC 3 cut(s) 299, 484, 541
ScrFI CCNGG 3 cut(s) 171, 203, 236
SfaNI GCATC 1 cut(s) 337
SmlI CTYRAG 1 cut(s) 519
SmoI CTYRAG 1 cut(s) 519
Sse9I AATT 3 cut(s) 284, 326, 452
SspMI CTAG 3 cut(s) 356, 563, 748
StyD4I CCNGG 3 cut(s) 169, 201, 234
TaaI ACNGT 1 cut(s) 156
TaiI ACGT 1 cut(s) 677
TaqI TCGA 1 cut(s) 678
TasI AATT 3 cut(s) 284, 326, 452
TatI WGTACW 1 cut(s) 465
TfiI GAWTC 3 cut(s) 186, 314, 599
Tru1I TTAA 2 cut(s) 426, 455
Tru9I TTAA 2 cut(s) 426, 455
TscAI CASTG 2 cut(s) 197, 519
TseFI GTSAC 3 cut(s) 118, 135, 275
Tsp45I GTSAC 3 cut(s) 118, 135, 275
TspDTI ATGAA 5 cut(s) 436, 464, 498, 572, 612
TspGWI ACGGA 2 cut(s) 92, 359
TspRI CASTG 2 cut(s) 197, 519
XapI RAATTY 1 cut(s) 284
XbaI TCTAGA 1 cut(s) 355
XmiI GTMKAC 1 cut(s) 177
XspI CTAG 3 cut(s) 356, 563, 748
Zsp2I ATGCAT 1 cut(s) 41
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.