Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0015208

Physical Location & Seq

Genomic Coordinates Forward (+)

51036701 .. 51039094

Gene Structure 2394 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1410800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 750 bp

ATGGGTAGGGAAAGGATAAGCCCACCAGCAACAACAACTACAAGAGCAAGAACATCAACCACAACAAGAAGAACAAGAAGCCATGTGAGTGTACACGTGCACGCATCTCAGGGGCCGAGCAACCGCGAGAGGGCCCCGCCAGGAGTTGATACAAGAATCCATTGGGAAAATGACGATGAAGGTTGGATTGGAGGAAGCAGCAGCAGGAAAGAGCAGGCGGAGCAAGAGCCGGAGTCGGAGCAGCAGAAGAGTCAGAGGCAGAGCAATCTCTTGGGAGACAAGTTTGCTGACTTGCTCAATGACTCCATTTCTGATTCCCATTACCAGTTCTTAGGGGTATCTGCAGAAGCTGATTTAGAAGAAATCAAAGCCGCATATCGAAGACTATCCAAAGAGTACCATCCGGACACCACTTCTCTTCCCCTCAAGACTGCGTCCGACAAGTTTGTGAGGCTACGAGAAATTTATGATGTGTTGAGCAACGAAGAGAGCCGTAAGTTTTACAACTGGACCCTCGCTCAAGAGGCTGCAAGCCGCCAAGCGGAAATAATGCGAATGAAGTTGGAGGATCCTTACGTGAAAGCAGTAGAGACGTATAAACCTGTCCCGGACATGGTTGATCGTCTTGGTGGAAAGAACATGGCGCTGGGCGATCAAGCGATGACGGCCCTCACCATCGATGTTTTGATCATCGTTTTTGCTATTTGTTGTATCACATATGTCATCTTCTTCAAAGAGCCATACTACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0010598 GO:0016020 GO:0031976 GO:0031984 GO:0032991 GO:0034357 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0055035 GO:0098796

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DnaJ

Protein Analysis

250

Amino Acids

28.34

Weight (kDa)

5.93

Isoelectric Point (pI)

47.67

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DnaJ	PF00226	107 - 169	5.2e-19	DnaJ domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015208)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G09350
fragaria_vesca	FvH4_5g32300
malus_domestica	MD15G1410800.v1.1
prunus_persica	Prupe.1G551900_v2.0.a1
pyrus_communis	pycom15g36560
rosa_chinensis	RchiOBHm_Chr7g0228561
rosa_laevigata	RLG00000001554
rosa_multiflora	Rmu_sc0006021.1_g000007 Rmu_sc0011334.1_g000002
rosa_roxburghii	Rroxscaffold_3G00231070
rosa_rugosa	Rorug07G0250500.1
rosa_samantha	Rh7AG402600 Rh7BG383500 Rh7CG422000 Rh7DG398400
rosa_wichuraiana	Rw7G033460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	126
AccIII	TCCGGA	1 cut(s)	403
AciI	CCGC	6 cut(s)	124, 137, 218, 372, 535, 542
AclWI	GGATC	2 cut(s)	563, 576
AcsI	RAATTY	1 cut(s)	462
AcvI	CACGTG	1 cut(s)	97
AfaI	GTAC	2 cut(s)	93, 398
AfiI	CCNNNNNNNGG	3 cut(s)	130, 541, 613
AflIII	ACRYGT	1 cut(s)	94
AgsI	TTSAA	1 cut(s)	733
AjnI	CCWGG	1 cut(s)	139
AjuI	GAANNNNNNNTTGG	2 cut(s)	171, 203
AluBI	AGCT	1 cut(s)	350
AluI	AGCT	1 cut(s)	350
Alw21I	GWGCWC	1 cut(s)	102
Alw26I	GTCTC	2 cut(s)	270, 584
Alw44I	GTGCAC	1 cut(s)	98
AlwI	GGATC	2 cut(s)	563, 576
AlwNI	CAGNNNCTG	1 cut(s)	350
Aor13HI	TCCGGA	1 cut(s)	403
AoxI	GGCC	3 cut(s)	113, 132, 666
ApaI	GGGCCC	1 cut(s)	136
ApaLI	GTGCAC	1 cut(s)	98
ApeKI	GCWGC	4 cut(s)	198, 201, 241, 527
ApoI	RAATTY	1 cut(s)	462
AspLEI	GCGC	1 cut(s)	646
AspS9I	GGNCC	5 cut(s)	113, 132, 133, 510, 667
AsuC2I	CCSGG	1 cut(s)	608
AsuHPI	GGTGA	1 cut(s)	664
AvaII	GGWCC	1 cut(s)	510
BaeGI	GKGCMC	2 cut(s)	102, 136
BamHI	GGATCC	1 cut(s)	568
BanII	GRGCYC	1 cut(s)	136
BbrPI	CACGTG	1 cut(s)	97
BbsI	GAAGAC	1 cut(s)	388
Bbv12I	GWGCWC	1 cut(s)	102
BbvI	GCAGC	4 cut(s)	210, 213, 253, 514
BccI	CCATC	2 cut(s)	408, 683
BceAI	ACGGC	2 cut(s)	477, 681
BciT130I	CCWGG	1 cut(s)	141
BclI	TGATCA	1 cut(s)	687
BcnI	CCSGG	1 cut(s)	608
BcoDI	GTCTC	2 cut(s)	270, 584
BfaI	CTAG	1 cut(s)	748
BfmI	CTRYAG	1 cut(s)	342
BfoI	RGCGCY	1 cut(s)	647
BisI	GCNGC	6 cut(s)	199, 202, 242, 372, 528, 535
BlsI	GCNGC	6 cut(s)	200, 203, 243, 373, 529, 536
Bme1390I	CCNGG	2 cut(s)	141, 608
Bme18I	GGWCC	1 cut(s)	510
BmgT120I	GGNCC	5 cut(s)	113, 132, 133, 510, 667
BmiI	GGNNCC	5 cut(s)	114, 134, 135, 512, 570
BmrFI	CCNGG	2 cut(s)	141, 608
BmsI	GCATC	1 cut(s)	113
BpiI	GAAGAC	1 cut(s)	388
BpuEI	CTTGAG	2 cut(s)	410, 504
BpuMI	CCSGG	1 cut(s)	608
Bsa29I	ATCGAT	1 cut(s)	678
BsaAI	YACGTR	2 cut(s)	97, 577
BsaWI	WCCGGW	1 cut(s)	403
Bsc4I	CCNNNNNNNGG	3 cut(s)	130, 541, 613
Bse1I	ACTGG	2 cut(s)	325, 512
BseAI	TCCGGA	1 cut(s)	403
BseBI	CCWGG	1 cut(s)	141
BseCI	ATCGAT	1 cut(s)	678
BseGI	GGATG	1 cut(s)	400
BseLI	CCNNNNNNNGG	3 cut(s)	130, 541, 613
BseMII	CTCAG	1 cut(s)	122
BseNI	ACTGG	2 cut(s)	325, 512
BseSI	GKGCMC	2 cut(s)	102, 136
BseXI	GCAGC	4 cut(s)	210, 213, 253, 514
BseYI	CCCAGC	1 cut(s)	646
Bsh1236I	CGCG	1 cut(s)	126
BshFI	GGCC	3 cut(s)	115, 134, 668
BshVI	ATCGAT	1 cut(s)	678
BsiHKAI	GWGCWC	1 cut(s)	102
BsiSI	CCGG	3 cut(s)	230, 404, 608
BslFI	GGGAC	1 cut(s)	590
BslI	CCNNNNNNNGG	3 cut(s)	130, 541, 613
BsmAI	GTCTC	2 cut(s)	270, 584
BsmBI	CGTCTC	1 cut(s)	584
BsmFI	GGGAC	1 cut(s)	590
BsnI	GGCC	3 cut(s)	115, 134, 668
Bsp120I	GGGCCC	1 cut(s)	132
Bsp1286I	GDGCHC	2 cut(s)	102, 136
Bsp13I	TCCGGA	1 cut(s)	403
Bsp1407I	TGTACA	1 cut(s)	91
Bsp143I	GATC	4 cut(s)	568, 619, 652, 687
BspACI	CCGC	6 cut(s)	124, 137, 218, 372, 535, 542
BspANI	GGCC	3 cut(s)	115, 134, 668
BspCNI	CTCAG	1 cut(s)	121
BspDI	ATCGAT	1 cut(s)	678
BspEI	TCCGGA	1 cut(s)	403
BspFNI	CGCG	1 cut(s)	126
BspLI	GGNNCC	5 cut(s)	114, 134, 135, 512, 570
BspMAI	CTGCAG	1 cut(s)	346
BspPI	GGATC	2 cut(s)	563, 576
BsrGI	TGTACA	1 cut(s)	91
BsrI	ACTGG	2 cut(s)	325, 512
BssMI	GATC	4 cut(s)	568, 619, 652, 687
Bst2UI	CCWGG	1 cut(s)	141
Bst6I	CTCTTC	3 cut(s)	242, 423, 480
BstAUI	TGTACA	1 cut(s)	91
BstBAI	YACGTR	2 cut(s)	97, 577
BstC8I	GCNNGC	3 cut(s)	102, 216, 532
BstDEI	CTNAG	2 cut(s)	108, 331
BstF5I	GGATG	1 cut(s)	400
BstFNI	CGCG	1 cut(s)	126
BstH2I	RGCGCY	1 cut(s)	647
BstHHI	GCGC	1 cut(s)	646
BstKTI	GATC	4 cut(s)	571, 622, 655, 690
BstMAI	GTCTC	2 cut(s)	270, 584
BstMBI	GATC	4 cut(s)	568, 619, 652, 687
BstMWI	GCNNNNNNNGC	3 cut(s)	220, 524, 665
BstNI	CCWGG	1 cut(s)	141
BstSCI	CCNGG	2 cut(s)	139, 606
BstSFI	CTRYAG	1 cut(s)	342
BstSLI	GKGCMC	2 cut(s)	102, 136
BstUI	CGCG	1 cut(s)	126
BstV1I	GCAGC	4 cut(s)	210, 213, 253, 514
BstV2I	GAAGAC	1 cut(s)	388
BstX2I	RGATCY	1 cut(s)	568
BstYI	RGATCY	1 cut(s)	568
Bsu15I	ATCGAT	1 cut(s)	678
BsuRI	GGCC	3 cut(s)	115, 134, 668
BsuTUI	ATCGAT	1 cut(s)	678
BtgZI	GCGATG	1 cut(s)	674
BtsCI	GGATG	1 cut(s)	400
Cac8I	GCNNGC	3 cut(s)	102, 216, 532
CaiI	CAGNNNCTG	1 cut(s)	350
CfoI	GCGC	1 cut(s)	646
Cfr13I	GGNCC	5 cut(s)	113, 132, 133, 510, 667
ClaI	ATCGAT	1 cut(s)	678
CseI	GACGC	1 cut(s)	423
Csp6I	GTAC	2 cut(s)	92, 397
CviAII	CATG	3 cut(s)	83, 613, 640
CviQI	GTAC	2 cut(s)	92, 397
DdeI	CTNAG	2 cut(s)	108, 331
DpnI	GATC	4 cut(s)	570, 621, 654, 689
DpnII	GATC	4 cut(s)	568, 619, 652, 687
Eam1104I	CTCTTC	3 cut(s)	242, 423, 480
EarI	CTCTTC	3 cut(s)	242, 423, 480
EciI	GGCGGA	1 cut(s)	233
Eco24I	GRGCYC	1 cut(s)	136
Eco47I	GGWCC	1 cut(s)	510
Eco72I	CACGTG	1 cut(s)	97
EcoO109I	RGGNCCY	2 cut(s)	132, 133
EcoRII	CCWGG	1 cut(s)	139
EcoT38I	GRGCYC	1 cut(s)	136
Esp3I	CGTCTC	1 cut(s)	584
FaeI	CATG	3 cut(s)	86, 616, 643
FaiI	YATR	9 cut(s)	84, 376, 468, 597, 614, 641, 718, 720, 742
FaqI	GGGAC	1 cut(s)	590
FatI	CATG	3 cut(s)	82, 612, 639
FauI	CCCGC	1 cut(s)	144
FauNDI	CATATG	1 cut(s)	718
FbaI	TGATCA	1 cut(s)	687
Fnu4HI	GCNGC	6 cut(s)	199, 202, 242, 372, 528, 535
FokI	GGATG	1 cut(s)	387
FriOI	GRGCYC	1 cut(s)	136
Fsp4HI	GCNGC	6 cut(s)	199, 202, 242, 372, 528, 535
FspBI	CTAG	1 cut(s)	748
GlaI	GCGC	1 cut(s)	645
GluI	GCNGC	6 cut(s)	199, 202, 242, 372, 528, 535
GsaI	CCCAGC	1 cut(s)	650
HaeII	RGCGCY	1 cut(s)	647
HaeIII	GGCC	3 cut(s)	115, 134, 668
HapII	CCGG	3 cut(s)	230, 404, 608
HgaI	GACGC	1 cut(s)	423
HhaI	GCGC	1 cut(s)	646
Hin1II	CATG	3 cut(s)	86, 616, 643
Hin6I	GCGC	1 cut(s)	644
HinP1I	GCGC	1 cut(s)	644
HinfI	GANTC	5 cut(s)	156, 233, 250, 302, 314
HpaII	CCGG	3 cut(s)	230, 404, 608
HphI	GGTGA	1 cut(s)	664
Hpy166II	GTNNAC	3 cut(s)	92, 94, 100
Hpy188I	TCNGA	4 cut(s)	238, 255, 313, 439
Hpy188III	TCNNGA	3 cut(s)	404, 427, 521
Hpy8I	GTNNAC	3 cut(s)	92, 94, 100
HpyAV	CCTTC	1 cut(s)	173
HpyCH4IV	ACGT	3 cut(s)	96, 576, 593
HpyCH4V	TGCA	3 cut(s)	100, 344, 530
HpyF10VI	GCNNNNNNNGC	3 cut(s)	220, 524, 665
HpyF3I	CTNAG	2 cut(s)	108, 331
HpySE526I	ACGT	3 cut(s)	96, 576, 593
Hsp92II	CATG	3 cut(s)	86, 616, 643
HspAI	GCGC	1 cut(s)	644
Kpn2I	TCCGGA	1 cut(s)	403
Ksp22I	TGATCA	1 cut(s)	687
Kzo9I	GATC	4 cut(s)	568, 619, 652, 687
LmnI	GCTCC	2 cut(s)	220, 238
Lsp1109I	GCAGC	4 cut(s)	210, 213, 253, 514
LweI	GCATC	1 cut(s)	113
MaeI	CTAG	1 cut(s)	748
MaeII	ACGT	3 cut(s)	96, 576, 593
MalI	GATC	4 cut(s)	570, 621, 654, 689
MboI	GATC	4 cut(s)	568, 619, 652, 687
MboII	GAAGA	8 cut(s)	81, 259, 371, 393, 410, 497, 718, 721
MflI	RGATCY	1 cut(s)	568
MhlI	GDGCHC	2 cut(s)	102, 136
MluCI	AATT	1 cut(s)	462
MlyI	GAGTC	3 cut(s)	242, 259, 296
MmeI	TCCRAC	4 cut(s)	164, 216, 462, 543
MnlI	CCTC	9 cut(s)	123, 185, 249, 434, 444, 517, 524, 559, 680
MroI	TCCGGA	1 cut(s)	403
MslI	CAYNNNNRTG	1 cut(s)	87
MspI	CCGG	3 cut(s)	230, 404, 608
MspR9I	CCNGG	2 cut(s)	141, 608
MvaI	CCWGG	1 cut(s)	141
MvnI	CGCG	1 cut(s)	126
MwoI	GCNNNNNNNGC	3 cut(s)	220, 524, 665
NciI	CCSGG	1 cut(s)	608
NdeI	CATATG	1 cut(s)	718
NdeII	GATC	4 cut(s)	568, 619, 652, 687
NlaIII	CATG	3 cut(s)	86, 616, 643
NlaIV	GGNNCC	5 cut(s)	114, 134, 135, 512, 570
NmeAIII	GCCGAG	1 cut(s)	141
PfeI	GAWTC	2 cut(s)	156, 314
PflFI	GACNNNGTC	1 cut(s)	433
PfoI	TCCNGGA	1 cut(s)	606
PkrI	GCNGC	6 cut(s)	200, 203, 243, 373, 529, 536
PleI	GAGTC	3 cut(s)	241, 258, 296
PmaCI	CACGTG	1 cut(s)	97
PmlI	CACGTG	1 cut(s)	97
PpsI	GAGTC	3 cut(s)	241, 258, 296
Ppu21I	YACGTR	2 cut(s)	97, 577
Psp6I	CCWGG	1 cut(s)	139
PspCI	CACGTG	1 cut(s)	97
PspFI	CCCAGC	1 cut(s)	646
PspGI	CCWGG	1 cut(s)	139
PspN4I	GGNNCC	5 cut(s)	114, 134, 135, 512, 570
PspOMI	GGGCCC	1 cut(s)	132
PspPI	GGNCC	5 cut(s)	113, 132, 133, 510, 667
PstI	CTGCAG	1 cut(s)	346
PstNI	CAGNNNCTG	1 cut(s)	350
PsuI	RGATCY	1 cut(s)	568
PsyI	GACNNNGTC	1 cut(s)	433
RsaI	GTAC	2 cut(s)	93, 398
RsaNI	GTAC	2 cut(s)	92, 397
RseI	CAYNNNNRTG	1 cut(s)	87
SatI	GCNGC	6 cut(s)	199, 202, 242, 372, 528, 535
Sau3AI	GATC	4 cut(s)	568, 619, 652, 687
Sau96I	GGNCC	5 cut(s)	113, 132, 133, 510, 667
SchI	GAGTC	3 cut(s)	242, 259, 296
ScrFI	CCNGG	2 cut(s)	141, 608
SduI	GDGCHC	2 cut(s)	102, 136
SetI	ASST	6 cut(s)	99, 184, 352, 579, 596, 604
SfaNI	GCATC	1 cut(s)	113
SfcI	CTRYAG	1 cut(s)	342
SinI	GGWCC	1 cut(s)	510
SmiMI	CAYNNNNRTG	1 cut(s)	87
SmlI	CTYRAG	2 cut(s)	425, 519
SmoI	CTYRAG	2 cut(s)	425, 519
Sse9I	AATT	1 cut(s)	462
SsiI	CCGC	6 cut(s)	124, 137, 218, 372, 535, 542
SspMI	CTAG	1 cut(s)	748
StyD4I	CCNGG	2 cut(s)	139, 606
TaiI	ACGT	3 cut(s)	99, 579, 596
TaqI	TCGA	2 cut(s)	379, 678
TasI	AATT	1 cut(s)	462
TatI	WGTACW	1 cut(s)	91
TauI	GCSGC	2 cut(s)	374, 537
TfiI	GAWTC	2 cut(s)	156, 314
TseI	GCWGC	4 cut(s)	198, 201, 241, 527
TspDTI	ATGAA	2 cut(s)	192, 572
Tth111I	GACNNNGTC	1 cut(s)	433
VneI	GTGCAC	1 cut(s)	98
VpaK11BI	GGWCC	1 cut(s)	510
XapI	RAATTY	1 cut(s)	462
XspI	CTAG	1 cut(s)	748

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.