Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0015208

Physical Location & Seq

Genomic Coordinates Reverse (-)

15990689 .. 15991877

Gene Structure 1189 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00231070.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 786 bp

ATGGCTTTCCCAGCTGCTCCTCAGGCCTCACACACTTTGAGCTTACTTGGTAGCCCAAAATCAAGAAGGGCAACAACAACAACCAGAAACTCAAGCCGCCATGTGAATTATATTGGTATTTTTCGTGTGCATGCATCAACCTCATCATCACAAGCTAAGGGTCCAAGCAAGCGAGAGAGACCCCCACCGGCGCCGGGTATCGATACAAGAATCCACTGGGACAACGAAGATGAAGGCTGGATTGGAGGAAGCAGCAGCAAGACGAATGGCAAAACACAACAAGTGGAGCAAGAGCAGCACAAGGATGTCTGGGGGAACAAGTTTGCTGATTTGCTCGATGACTCGGCTGATTCGCACTACCAGTTTTTAGGAGTATCAGCAGAAGCTGATATAGAAGAAATCAAAGCTGCTTATAGAAGACTGTCTAAAGAGTACCATCCAGACACCACTTCTCTTCCGCTAAAGACTGCGTCCGACAAGTTTGTTAGGCTAAGAGAAATTTATGATGTGTTGAGTAACGAAGAGAGCCGCAGATTTTACAATTGGACACTTGCTCAAGAGGCTGCAAGCCGCCAGGCTGAAATGATGAGAATGAGGTTGGAGGATCCTTATGTGAAAGAAGTGGAGACGTATGAACCTATCCCGGACATGGTGGATCGTCTTGGTGGAAGGAACATGGCCCTTGGCGATCAAGCAGTGACGGCCCTTACCATTGATGTTTTCATCATCTTCTTTGCTATTTGTTGTATTGTATATGTGATCGTATTCAAGGAGCCATATTACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0010598 GO:0016020 GO:0031976 GO:0031984 GO:0032991 GO:0034357 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0055035 GO:0098796

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DnaJ

Protein Analysis

261

Amino Acids

29.57

Weight (kDa)

6.01

Isoelectric Point (pI)

48.33

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DnaJ	PF00226	119 - 181	7.2e-19	DnaJ domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015208)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G09350
fragaria_vesca	FvH4_5g32300
malus_domestica	MD15G1410800.v1.1
prunus_persica	Prupe.1G551900_v2.0.a1
pyrus_communis	pycom15g36560
rosa_chinensis	RchiOBHm_Chr7g0228561
rosa_laevigata	RLG00000001554
rosa_multiflora	Rmu_sc0006021.1_g000007 Rmu_sc0011334.1_g000002
rosa_roxburghii	Rroxscaffold_3G00231070
rosa_rugosa	Rorug07G0250500.1
rosa_samantha	Rh7AG402600 Rh7BG383500 Rh7CG422000 Rh7DG398400
rosa_wichuraiana	Rw7G033460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	190
AciI	CCGC	4 cut(s)	97, 458, 529, 571
AclWI	GGATC	3 cut(s)	599, 612, 663
AcsI	RAATTY	1 cut(s)	498
AcyI	GRCGYC	1 cut(s)	191
AfaI	GTAC	1 cut(s)	434
AfiI	CCNNNNNNNGG	2 cut(s)	194, 649
AgsI	TTSAA	1 cut(s)	769
AjnI	CCWGG	1 cut(s)	573
AjuI	GAANNNNNNNTTGG	2 cut(s)	225, 257
AluBI	AGCT	5 cut(s)	14, 42, 155, 386, 407
AluI	AGCT	5 cut(s)	14, 42, 155, 386, 407
Alw26I	GTCTC	2 cut(s)	172, 620
AlwI	GGATC	3 cut(s)	599, 612, 663
AlwNI	CAGNNNCTG	1 cut(s)	386
AoxI	GGCC	3 cut(s)	24, 678, 702
ApeKI	GCWGC	6 cut(s)	14, 252, 255, 295, 407, 563
ApoI	RAATTY	1 cut(s)	498
AspLEI	GCGC	1 cut(s)	193
AspS9I	GGNCC	3 cut(s)	161, 679, 703
AsuC2I	CCSGG	2 cut(s)	195, 644
AvaII	GGWCC	1 cut(s)	161
AxyI	CCTNAGG	1 cut(s)	21
BamHI	GGATCC	1 cut(s)	604
BanI	GGYRCC	1 cut(s)	190
BbsI	GAAGAC	1 cut(s)	424
BbvI	GCAGC	5 cut(s)	264, 267, 307, 394, 550
BccI	CCATC	1 cut(s)	444
BceAI	ACGGC	1 cut(s)	717
BciT130I	CCWGG	1 cut(s)	575
BcnI	CCSGG	2 cut(s)	195, 644
BcoDI	GTCTC	2 cut(s)	172, 620
BfaI	CTAG	1 cut(s)	784
BfoI	RGCGCY	1 cut(s)	194
BisI	GCNGC	9 cut(s)	15, 97, 253, 256, 296, 408, 529, 564, 571
BlsI	GCNGC	9 cut(s)	16, 98, 254, 257, 297, 409, 530, 565, 572
Bme1390I	CCNGG	3 cut(s)	195, 575, 644
Bme18I	GGWCC	1 cut(s)	161
BmgT120I	GGNCC	3 cut(s)	161, 679, 703
BmiI	GGNNCC	4 cut(s)	162, 192, 606, 774
BmrFI	CCNGG	3 cut(s)	195, 575, 644
BmrI	ACTGGG	1 cut(s)	226
BmsI	GCATC	1 cut(s)	143
BmuI	ACTGGG	1 cut(s)	226
BpiI	GAAGAC	1 cut(s)	424
Bpu10I	CCTNAGC	1 cut(s)	156
BpuEI	CTTGAG	2 cut(s)	76, 540
BpuMI	CCSGG	2 cut(s)	195, 644
Bsa29I	ATCGAT	1 cut(s)	201
BsaHI	GRCGYC	1 cut(s)	191
BsaI	GGTCTC	1 cut(s)	172
BsaJI	CCNNGG	1 cut(s)	682
Bsc4I	CCNNNNNNNGG	2 cut(s)	194, 649
Bse118I	RCCGGY	1 cut(s)	187
Bse1I	ACTGG	2 cut(s)	221, 361
Bse21I	CCTNAGG	1 cut(s)	21
BseBI	CCWGG	1 cut(s)	575
BseCI	ATCGAT	1 cut(s)	201
BseDI	CCNNGG	1 cut(s)	682
BseGI	GGATG	2 cut(s)	310, 436
BseLI	CCNNNNNNNGG	2 cut(s)	194, 649
BseMII	CTCAG	1 cut(s)	35
BseNI	ACTGG	2 cut(s)	221, 361
BseRI	GAGGAG	1 cut(s)	9
BseXI	GCAGC	5 cut(s)	264, 267, 307, 394, 550
BseYI	CCCAGC	1 cut(s)	10
BshFI	GGCC	3 cut(s)	26, 680, 704
BshNI	GGYRCC	1 cut(s)	190
BshVI	ATCGAT	1 cut(s)	201
BsiSI	CCGG	3 cut(s)	188, 194, 644
BslFI	GGGAC	1 cut(s)	233
BslI	CCNNNNNNNGG	2 cut(s)	194, 649
BsmAI	GTCTC	2 cut(s)	172, 620
BsmBI	CGTCTC	1 cut(s)	620
BsmFI	GGGAC	1 cut(s)	233
BsnI	GGCC	3 cut(s)	26, 680, 704
Bso31I	GGTCTC	1 cut(s)	172
Bsp143I	GATC	4 cut(s)	604, 655, 688, 759
BspACI	CCGC	4 cut(s)	97, 458, 529, 571
BspANI	GGCC	3 cut(s)	26, 680, 704
BspCNI	CTCAG	1 cut(s)	34
BspDI	ATCGAT	1 cut(s)	201
BspLI	GGNNCC	4 cut(s)	162, 192, 606, 774
BspPI	GGATC	3 cut(s)	599, 612, 663
BspT107I	GGYRCC	1 cut(s)	190
BspTNI	GGTCTC	1 cut(s)	172
BsrFI	RCCGGY	1 cut(s)	187
BsrI	ACTGG	2 cut(s)	221, 361
BssAI	RCCGGY	1 cut(s)	187
BssECI	CCNNGG	1 cut(s)	682
BssMI	GATC	4 cut(s)	604, 655, 688, 759
BssNI	GRCGYC	1 cut(s)	191
BssT1I	CCWWGG	1 cut(s)	682
Bst2UI	CCWGG	1 cut(s)	575
Bst4CI	ACNGT	1 cut(s)	423
Bst6I	CTCTTC	2 cut(s)	459, 516
BstACI	GRCGYC	1 cut(s)	191
BstC8I	GCNNGC	3 cut(s)	132, 170, 568
BstDEI	CTNAG	3 cut(s)	21, 156, 491
BstF5I	GGATG	2 cut(s)	310, 436
BstH2I	RGCGCY	1 cut(s)	194
BstHHI	GCGC	1 cut(s)	193
BstKTI	GATC	4 cut(s)	607, 658, 691, 762
BstMAI	GTCTC	2 cut(s)	172, 620
BstMBI	GATC	4 cut(s)	604, 655, 688, 759
BstMWI	GCNNNNNNNGC	5 cut(s)	11, 23, 295, 560, 701
BstNI	CCWGG	1 cut(s)	575
BstNSI	RCATGY	1 cut(s)	134
BstSCI	CCNGG	3 cut(s)	193, 573, 642
BstV1I	GCAGC	5 cut(s)	264, 267, 307, 394, 550
BstV2I	GAAGAC	1 cut(s)	424
BstX2I	RGATCY	1 cut(s)	604
BstYI	RGATCY	1 cut(s)	604
Bsu15I	ATCGAT	1 cut(s)	201
Bsu36I	CCTNAGG	1 cut(s)	21
BsuRI	GGCC	3 cut(s)	26, 680, 704
BsuTUI	ATCGAT	1 cut(s)	201
BtsCI	GGATG	2 cut(s)	310, 436
BtsI	GCAGTG	1 cut(s)	702
BtsIMutI	CAGTG	2 cut(s)	214, 702
Cac8I	GCNNGC	3 cut(s)	132, 170, 568
CaiI	CAGNNNCTG	1 cut(s)	386
CfoI	GCGC	1 cut(s)	193
Cfr10I	RCCGGY	1 cut(s)	187
Cfr13I	GGNCC	3 cut(s)	161, 679, 703
ClaI	ATCGAT	1 cut(s)	201
CseI	GACGC	1 cut(s)	459
Csp6I	GTAC	1 cut(s)	433
CviAII	CATG	4 cut(s)	101, 131, 649, 676
CviQI	GTAC	1 cut(s)	433
DdeI	CTNAG	3 cut(s)	21, 156, 491
DinI	GGCGCC	1 cut(s)	192
DpnI	GATC	4 cut(s)	606, 657, 690, 761
DpnII	GATC	4 cut(s)	604, 655, 688, 759
Eam1104I	CTCTTC	2 cut(s)	459, 516
EarI	CTCTTC	2 cut(s)	459, 516
Eco130I	CCWWGG	1 cut(s)	682
Eco147I	AGGCCT	1 cut(s)	26
Eco31I	GGTCTC	1 cut(s)	172
Eco47I	GGWCC	1 cut(s)	161
Eco81I	CCTNAGG	1 cut(s)	21
EcoRII	CCWGG	1 cut(s)	573
EcoT14I	CCWWGG	1 cut(s)	682
EcoT22I	ATGCAT	1 cut(s)	136
EgeI	GGCGCC	1 cut(s)	192
EheI	GGCGCC	1 cut(s)	192
ErhI	CCWWGG	1 cut(s)	682
Esp3I	CGTCTC	1 cut(s)	620
FaeI	CATG	4 cut(s)	104, 134, 652, 679
FaqI	GGGAC	1 cut(s)	233
FatI	CATG	4 cut(s)	100, 130, 648, 675
Fnu4HI	GCNGC	9 cut(s)	15, 97, 253, 256, 296, 408, 529, 564, 571
FokI	GGATG	2 cut(s)	317, 423
Fsp4HI	GCNGC	9 cut(s)	15, 97, 253, 256, 296, 408, 529, 564, 571
FspBI	CTAG	1 cut(s)	784
GlaI	GCGC	1 cut(s)	192
GluI	GCNGC	9 cut(s)	15, 97, 253, 256, 296, 408, 529, 564, 571
GsaI	CCCAGC	1 cut(s)	14
HaeII	RGCGCY	1 cut(s)	194
HaeIII	GGCC	3 cut(s)	26, 680, 704
HapII	CCGG	3 cut(s)	188, 194, 644
HgaI	GACGC	1 cut(s)	459
HhaI	GCGC	1 cut(s)	193
Hin1I	GRCGYC	1 cut(s)	191
Hin1II	CATG	4 cut(s)	104, 134, 652, 679
Hin6I	GCGC	1 cut(s)	191
HinP1I	GCGC	1 cut(s)	191
HinfI	GANTC	3 cut(s)	210, 341, 350
HpaII	CCGG	3 cut(s)	188, 194, 644
Hpy188I	TCNGA	1 cut(s)	475
Hpy188III	TCNNGA	3 cut(s)	63, 440, 557
HpyAV	CCTTC	3 cut(s)	60, 227, 663
HpyCH4III	ACNGT	1 cut(s)	423
HpyCH4IV	ACGT	1 cut(s)	629
HpyCH4V	TGCA	3 cut(s)	130, 134, 566
HpyF10VI	GCNNNNNNNGC	5 cut(s)	11, 23, 295, 560, 701
HpyF3I	CTNAG	3 cut(s)	21, 156, 491
HpySE526I	ACGT	1 cut(s)	629
Hsp92I	GRCGYC	1 cut(s)	191
Hsp92II	CATG	4 cut(s)	104, 134, 652, 679
HspAI	GCGC	1 cut(s)	191
KasI	GGCGCC	1 cut(s)	190
Kzo9I	GATC	4 cut(s)	604, 655, 688, 759
LmnI	GCTCC	3 cut(s)	22, 286, 772
Lsp1109I	GCAGC	5 cut(s)	264, 267, 307, 394, 550
LweI	GCATC	1 cut(s)	143
MaeI	CTAG	1 cut(s)	784
MaeII	ACGT	1 cut(s)	629
MaeIII	GTNAC	2 cut(s)	515, 697
MalI	GATC	4 cut(s)	606, 657, 690, 761
MboI	GATC	4 cut(s)	604, 655, 688, 759
MboII	GAAGA	6 cut(s)	239, 407, 429, 446, 533, 721
MfeI	CAATTG	1 cut(s)	541
MflI	RGATCY	1 cut(s)	604
MluCI	AATT	3 cut(s)	106, 498, 541
Mly113I	GGCGCC	1 cut(s)	191
MlyI	GAGTC	1 cut(s)	335
MmeI	TCCRAC	2 cut(s)	498, 579
MnlI	CCTC	7 cut(s)	30, 37, 151, 239, 553, 588, 595
Mph1103I	ATGCAT	1 cut(s)	136
MslI	CAYNNNNRTG	1 cut(s)	303
MspA1I	CMGCKG	1 cut(s)	14
MspI	CCGG	3 cut(s)	188, 194, 644
MspR9I	CCNGG	3 cut(s)	195, 575, 644
MunI	CAATTG	1 cut(s)	541
MvaI	CCWGG	1 cut(s)	575
MwoI	GCNNNNNNNGC	5 cut(s)	11, 23, 295, 560, 701
NarI	GGCGCC	1 cut(s)	191
NciI	CCSGG	2 cut(s)	195, 644
NdeII	GATC	4 cut(s)	604, 655, 688, 759
NlaIII	CATG	4 cut(s)	104, 134, 652, 679
NlaIV	GGNNCC	4 cut(s)	162, 192, 606, 774
NmeAIII	GCCGAG	1 cut(s)	323
NmuCI	GTSAC	1 cut(s)	697
NsiI	ATGCAT	1 cut(s)	136
NspI	RCATGY	1 cut(s)	134
PaeI	GCATGC	1 cut(s)	134
PceI	AGGCCT	1 cut(s)	26
PfeI	GAWTC	2 cut(s)	210, 350
PflFI	GACNNNGTC	1 cut(s)	469
PfoI	TCCNGGA	1 cut(s)	642
PkrI	GCNGC	9 cut(s)	16, 98, 254, 257, 297, 409, 530, 565, 572
PleI	GAGTC	1 cut(s)	335
PluTI	GGCGCC	1 cut(s)	194
PpsI	GAGTC	1 cut(s)	335
Psp6I	CCWGG	1 cut(s)	573
PspFI	CCCAGC	1 cut(s)	10
PspGI	CCWGG	1 cut(s)	573
PspN4I	GGNNCC	4 cut(s)	162, 192, 606, 774
PspPI	GGNCC	3 cut(s)	161, 679, 703
PstNI	CAGNNNCTG	1 cut(s)	386
PsuI	RGATCY	1 cut(s)	604
PsyI	GACNNNGTC	1 cut(s)	469
PvuII	CAGCTG	1 cut(s)	14
RsaI	GTAC	1 cut(s)	434
RsaNI	GTAC	1 cut(s)	433
RseI	CAYNNNNRTG	1 cut(s)	303
SatI	GCNGC	9 cut(s)	15, 97, 253, 256, 296, 408, 529, 564, 571
Sau3AI	GATC	4 cut(s)	604, 655, 688, 759
Sau96I	GGNCC	3 cut(s)	161, 679, 703
SchI	GAGTC	1 cut(s)	335
ScrFI	CCNGG	3 cut(s)	195, 575, 644
SetI	ASST	9 cut(s)	16, 44, 143, 157, 388, 409, 599, 632, 640
SfaNI	GCATC	1 cut(s)	143
SfoI	GGCGCC	1 cut(s)	192
SgrAI	CRCCGGYG	1 cut(s)	187
SinI	GGWCC	1 cut(s)	161
SmiMI	CAYNNNNRTG	1 cut(s)	303
SmlI	CTYRAG	2 cut(s)	91, 555
SmoI	CTYRAG	2 cut(s)	91, 555
SphI	GCATGC	1 cut(s)	134
Sse9I	AATT	3 cut(s)	106, 498, 541
SseBI	AGGCCT	1 cut(s)	26
SsiI	CCGC	4 cut(s)	97, 458, 529, 571
SspDI	GGCGCC	1 cut(s)	190
SspMI	CTAG	1 cut(s)	784
StuI	AGGCCT	1 cut(s)	26
StyD4I	CCNGG	3 cut(s)	193, 573, 642
StyI	CCWWGG	1 cut(s)	682
TaaI	ACNGT	1 cut(s)	423
TaiI	ACGT	1 cut(s)	632
TaqI	TCGA	2 cut(s)	201, 336
TasI	AATT	3 cut(s)	106, 498, 541
TauI	GCSGC	3 cut(s)	99, 531, 573
TfiI	GAWTC	2 cut(s)	210, 350
TscAI	CASTG	2 cut(s)	221, 702
TseFI	GTSAC	1 cut(s)	697
TseI	GCWGC	6 cut(s)	14, 252, 255, 295, 407, 563
Tsp45I	GTSAC	1 cut(s)	697
TspDTI	ATGAA	3 cut(s)	246, 648, 712
TspRI	CASTG	2 cut(s)	221, 702
Tth111I	GACNNNGTC	1 cut(s)	469
VpaK11BI	GGWCC	1 cut(s)	161
XapI	RAATTY	1 cut(s)	498
XceI	RCATGY	1 cut(s)	134
XspI	CTAG	1 cut(s)	784
Zsp2I	ATGCAT	1 cut(s)	136

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.