Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0015208

Physical Location & Seq

Genomic Coordinates Forward (+)

23304145 .. 23305442

Gene Structure 1298 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g32300.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 780 bp

ATGGCTTTTGCAGCTGCTCCTCATGCCTCACACACTTTAAGCTTACTTGGTACCCCAAATTCAAGAAGAGCAACCACAACAACTAGAACCTCAAGCCGCCATGTGAACCACGTTGCAACTTTTCATGTGCATGCATCAACCTCATCATCCCAAGCTGAGGGTCCAAGCAAGCGAGGAAGACCCCCACCGGCTCCCGGAATCGATACCAGAATCCATTGGGAAAACGAAGATGAAGGCTGGATTGGAGGAACCAGCAGCAAGAAAACACAACAGCAAGTAGAGCAAGAGCAGCAGAAAGATGTCTGGGGAAATAAGTTTGCTGATTTGCTTGATGACTCAGCTGATTCTCACTACCAGTTTTTAGGAGTATCAGCAGAAGCTGATCTAGAAGAAATCAAAGCTGCTTATAGAAGACTATCCAAAGAGTACCATCCGGACACCACTTCTCTTCCACTAAAGACTGCGTCCGACAAGTTTGTGAGGCTAAGAGAAATTTATGATGTGTTGAGTAACGAAGAGAGCCGTCGATTTTACAACTGGACACTTGCTCAAGAGGCCGCAAGTCGCCAGGCTGAAATGATGAGAATGAGGTTGGAGGATCCTTTTGTGAAAGAAGTGGAGACGTATGAACCTATTCCGGATATGGTGGATCGTCTTGGTGGAAAGAACATGGCCCTTGGCGATCAAGCAGTGACAGCCCTTACCATTGATATTTTCATCATTATCTTTGCTATATGTTGCATTGTATATGTGCTTGTATTCAAGGAGCCATATTACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0010598 GO:0016020 GO:0031976 GO:0031984 GO:0032991 GO:0034357 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0055035 GO:0098796

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DnaJ

Protein Analysis

260

Amino Acids

29.22

Weight (kDa)

5.73

Isoelectric Point (pI)

44.26

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DnaJ	PF00226	117 - 179	5.1e-19	DnaJ domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015208)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G09350
fragaria_vesca	FvH4_5g32300
malus_domestica	MD15G1410800.v1.1
prunus_persica	Prupe.1G551900_v2.0.a1
pyrus_communis	pycom15g36560
rosa_chinensis	RchiOBHm_Chr7g0228561
rosa_laevigata	RLG00000001554
rosa_multiflora	Rmu_sc0006021.1_g000007 Rmu_sc0011334.1_g000002
rosa_roxburghii	Rroxscaffold_3G00231070
rosa_rugosa	Rorug07G0250500.1
rosa_samantha	Rh7AG402600 Rh7BG383500 Rh7CG422000 Rh7DG398400
rosa_wichuraiana	Rw7G033460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	50
AccB1I	GGYRCC	1 cut(s)	50
AccIII	TCCGGA	2 cut(s)	433, 637
AciI	CCGC	2 cut(s)	97, 558
AclWI	GGATC	3 cut(s)	593, 606, 657
AcsI	RAATTY	2 cut(s)	58, 492
AfaI	GTAC	2 cut(s)	52, 428
AfiI	CCNNNNNNNGG	2 cut(s)	157, 194
AgsI	TTSAA	2 cut(s)	63, 763
AjnI	CCWGG	1 cut(s)	567
AjuI	GAANNNNNNNTTGG	2 cut(s)	225, 257
AluBI	AGCT	6 cut(s)	14, 42, 155, 341, 380, 401
AluI	AGCT	6 cut(s)	14, 42, 155, 341, 380, 401
Alw26I	GTCTC	1 cut(s)	614
AlwI	GGATC	3 cut(s)	593, 606, 657
AlwNI	CAGNNNCTG	1 cut(s)	380
Aor13HI	TCCGGA	2 cut(s)	433, 637
AoxI	GGCC	2 cut(s)	555, 672
ApeKI	GCWGC	5 cut(s)	11, 14, 255, 289, 401
ApoI	RAATTY	2 cut(s)	58, 492
Asp700I	GAANNNNTTC	1 cut(s)	633
Asp718I	GGTACC	1 cut(s)	50
AspS9I	GGNCC	2 cut(s)	161, 673
AsuC2I	CCSGG	1 cut(s)	195
AvaII	GGWCC	1 cut(s)	161
BamHI	GGATCC	1 cut(s)	598
BanI	GGYRCC	1 cut(s)	50
BbsI	GAAGAC	2 cut(s)	184, 418
BbvCI	CCTCAGC	1 cut(s)	156
BbvI	GCAGC	4 cut(s)	23, 267, 301, 388
BccI	CCATC	1 cut(s)	438
BceAI	ACGGC	1 cut(s)	507
BciT130I	CCWGG	1 cut(s)	569
BcnI	CCSGG	1 cut(s)	195
BcoDI	GTCTC	1 cut(s)	614
BfaI	CTAG	3 cut(s)	84, 386, 778
BisI	GCNGC	7 cut(s)	12, 15, 97, 256, 290, 402, 558
BlsI	GCNGC	7 cut(s)	13, 16, 98, 257, 291, 403, 559
Bme1390I	CCNGG	2 cut(s)	195, 569
Bme18I	GGWCC	1 cut(s)	161
BmgT120I	GGNCC	2 cut(s)	161, 673
BmiI	GGNNCC	6 cut(s)	52, 162, 192, 250, 600, 768
BmrFI	CCNGG	2 cut(s)	195, 569
BmsI	GCATC	1 cut(s)	143
BpiI	GAAGAC	2 cut(s)	184, 418
Bpu10I	CCTNAGC	1 cut(s)	156
BpuEI	CTTGAG	2 cut(s)	76, 534
BpuMI	CCSGG	1 cut(s)	195
Bsa29I	ATCGAT	1 cut(s)	201
BsaJI	CCNNGG	1 cut(s)	676
BsaWI	WCCGGW	2 cut(s)	433, 637
Bsc4I	CCNNNNNNNGG	2 cut(s)	157, 194
Bse118I	RCCGGY	1 cut(s)	187
Bse1I	ACTGG	2 cut(s)	355, 542
BseAI	TCCGGA	2 cut(s)	433, 637
BseBI	CCWGG	1 cut(s)	569
BseCI	ATCGAT	1 cut(s)	201
BseDI	CCNNGG	1 cut(s)	676
BseGI	GGATG	2 cut(s)	146, 430
BseLI	CCNNNNNNNGG	2 cut(s)	157, 194
BseMII	CTCAG	2 cut(s)	147, 351
BseNI	ACTGG	2 cut(s)	355, 542
BseRI	GAGGAG	1 cut(s)	9
BseXI	GCAGC	4 cut(s)	23, 267, 301, 388
BshFI	GGCC	2 cut(s)	557, 674
BshNI	GGYRCC	1 cut(s)	50
BshVI	ATCGAT	1 cut(s)	201
BsiSI	CCGG	4 cut(s)	188, 195, 434, 638
BslI	CCNNNNNNNGG	2 cut(s)	157, 194
BsmAI	GTCTC	1 cut(s)	614
BsmBI	CGTCTC	1 cut(s)	614
BsnI	GGCC	2 cut(s)	557, 674
Bsp13I	TCCGGA	2 cut(s)	433, 637
Bsp143I	GATC	4 cut(s)	382, 598, 649, 682
BspACI	CCGC	2 cut(s)	97, 558
BspANI	GGCC	2 cut(s)	557, 674
BspCNI	CTCAG	2 cut(s)	148, 350
BspDI	ATCGAT	1 cut(s)	201
BspEI	TCCGGA	2 cut(s)	433, 637
BspLI	GGNNCC	6 cut(s)	52, 162, 192, 250, 600, 768
BspPI	GGATC	3 cut(s)	593, 606, 657
BspQI	GCTCTTC	1 cut(s)	61
BspT107I	GGYRCC	1 cut(s)	50
BsrFI	RCCGGY	1 cut(s)	187
BsrI	ACTGG	2 cut(s)	355, 542
BssAI	RCCGGY	1 cut(s)	187
BssECI	CCNNGG	1 cut(s)	676
BssMI	GATC	4 cut(s)	382, 598, 649, 682
BssT1I	CCWWGG	1 cut(s)	676
Bst2UI	CCWGG	1 cut(s)	569
Bst6I	CTCTTC	3 cut(s)	61, 453, 510
BstC8I	GCNNGC	2 cut(s)	132, 170
BstDEI	CTNAG	3 cut(s)	156, 337, 485
BstF5I	GGATG	2 cut(s)	146, 430
BstKTI	GATC	4 cut(s)	385, 601, 652, 685
BstMAI	GTCTC	1 cut(s)	614
BstMBI	GATC	4 cut(s)	382, 598, 649, 682
BstMWI	GCNNNNNNNGC	6 cut(s)	11, 23, 280, 289, 554, 695
BstNI	CCWGG	1 cut(s)	569
BstNSI	RCATGY	1 cut(s)	134
BstSCI	CCNGG	2 cut(s)	193, 567
BstV1I	GCAGC	4 cut(s)	23, 267, 301, 388
BstV2I	GAAGAC	2 cut(s)	184, 418
BstX2I	RGATCY	1 cut(s)	598
BstYI	RGATCY	1 cut(s)	598
Bsu15I	ATCGAT	1 cut(s)	201
BsuRI	GGCC	2 cut(s)	557, 674
BsuTUI	ATCGAT	1 cut(s)	201
BtsCI	GGATG	2 cut(s)	146, 430
BtsI	GCAGTG	1 cut(s)	696
BtsIMutI	CAGTG	1 cut(s)	696
Cac8I	GCNNGC	2 cut(s)	132, 170
CaiI	CAGNNNCTG	1 cut(s)	380
Cfr10I	RCCGGY	1 cut(s)	187
Cfr13I	GGNCC	2 cut(s)	161, 673
ClaI	ATCGAT	1 cut(s)	201
CseI	GACGC	1 cut(s)	453
Csp6I	GTAC	2 cut(s)	51, 427
CviAII	CATG	5 cut(s)	23, 101, 125, 131, 670
CviQI	GTAC	2 cut(s)	51, 427
DdeI	CTNAG	3 cut(s)	156, 337, 485
DpnI	GATC	4 cut(s)	384, 600, 651, 684
DpnII	GATC	4 cut(s)	382, 598, 649, 682
Eam1104I	CTCTTC	3 cut(s)	61, 453, 510
EarI	CTCTTC	3 cut(s)	61, 453, 510
Eco130I	CCWWGG	1 cut(s)	676
Eco47I	GGWCC	1 cut(s)	161
EcoRII	CCWGG	1 cut(s)	567
EcoT14I	CCWWGG	1 cut(s)	676
EcoT22I	ATGCAT	1 cut(s)	136
ErhI	CCWWGG	1 cut(s)	676
Esp3I	CGTCTC	1 cut(s)	614
FaeI	CATG	5 cut(s)	26, 104, 128, 134, 673
FatI	CATG	5 cut(s)	22, 100, 124, 130, 669
Fnu4HI	GCNGC	7 cut(s)	12, 15, 97, 256, 290, 402, 558
FokI	GGATG	2 cut(s)	133, 417
Fsp4HI	GCNGC	7 cut(s)	12, 15, 97, 256, 290, 402, 558
FspBI	CTAG	3 cut(s)	84, 386, 778
GluI	GCNGC	7 cut(s)	12, 15, 97, 256, 290, 402, 558
HaeIII	GGCC	2 cut(s)	557, 674
HapII	CCGG	4 cut(s)	188, 195, 434, 638
HgaI	GACGC	1 cut(s)	453
Hin1II	CATG	5 cut(s)	26, 104, 128, 134, 673
HindIII	AAGCTT	1 cut(s)	40
HinfI	GANTC	4 cut(s)	198, 210, 335, 344
HpaII	CCGG	4 cut(s)	188, 195, 434, 638
Hpy166II	GTNNAC	1 cut(s)	106
Hpy188I	TCNGA	1 cut(s)	469
Hpy188III	TCNNGA	5 cut(s)	63, 386, 434, 551, 638
Hpy8I	GTNNAC	1 cut(s)	106
Hpy99I	CGWCG	1 cut(s)	528
HpyAV	CCTTC	1 cut(s)	227
HpyCH4IV	ACGT	2 cut(s)	111, 623
HpyCH4V	TGCA	5 cut(s)	11, 116, 130, 134, 741
HpyF10VI	GCNNNNNNNGC	6 cut(s)	11, 23, 280, 289, 554, 695
HpyF3I	CTNAG	3 cut(s)	156, 337, 485
HpySE526I	ACGT	2 cut(s)	111, 623
Hsp92II	CATG	5 cut(s)	26, 104, 128, 134, 673
Kpn2I	TCCGGA	2 cut(s)	433, 637
KpnI	GGTACC	1 cut(s)	54
Kzo9I	GATC	4 cut(s)	382, 598, 649, 682
LguI	GCTCTTC	1 cut(s)	61
LmnI	GCTCC	3 cut(s)	22, 196, 766
Lsp1109I	GCAGC	4 cut(s)	23, 267, 301, 388
LweI	GCATC	1 cut(s)	143
MaeI	CTAG	3 cut(s)	84, 386, 778
MaeII	ACGT	2 cut(s)	111, 623
MaeIII	GTNAC	2 cut(s)	509, 691
MalI	GATC	4 cut(s)	384, 600, 651, 684
MboI	GATC	4 cut(s)	382, 598, 649, 682
MboII	GAAGA	7 cut(s)	78, 189, 239, 401, 423, 440, 527
MflI	RGATCY	1 cut(s)	598
MluCI	AATT	2 cut(s)	58, 492
MlyI	GAGTC	1 cut(s)	329
MmeI	TCCRAC	2 cut(s)	492, 573
Mph1103I	ATGCAT	1 cut(s)	136
MroI	TCCGGA	2 cut(s)	433, 637
MroXI	GAANNNNTTC	1 cut(s)	633
MseI	TTAA	1 cut(s)	38
MslI	CAYNNNNRTG	1 cut(s)	129
MspA1I	CMGCKG	2 cut(s)	14, 341
MspI	CCGG	4 cut(s)	188, 195, 434, 638
MspR9I	CCNGG	2 cut(s)	195, 569
MvaI	CCWGG	1 cut(s)	569
MwoI	GCNNNNNNNGC	6 cut(s)	11, 23, 280, 289, 554, 695
NciI	CCSGG	1 cut(s)	195
NdeII	GATC	4 cut(s)	382, 598, 649, 682
NlaIII	CATG	5 cut(s)	26, 104, 128, 134, 673
NlaIV	GGNNCC	6 cut(s)	52, 162, 192, 250, 600, 768
NmuCI	GTSAC	1 cut(s)	691
NsiI	ATGCAT	1 cut(s)	136
NspI	RCATGY	1 cut(s)	134
PaeI	GCATGC	1 cut(s)	134
PciSI	GCTCTTC	1 cut(s)	61
PdmI	GAANNNNTTC	1 cut(s)	633
PfeI	GAWTC	3 cut(s)	198, 210, 344
PflFI	GACNNNGTC	1 cut(s)	463
PfoI	TCCNGGA	1 cut(s)	193
PkrI	GCNGC	7 cut(s)	13, 16, 98, 257, 291, 403, 559
PleI	GAGTC	1 cut(s)	329
PpsI	GAGTC	1 cut(s)	329
Psp6I	CCWGG	1 cut(s)	567
PspGI	CCWGG	1 cut(s)	567
PspN4I	GGNNCC	6 cut(s)	52, 162, 192, 250, 600, 768
PspPI	GGNCC	2 cut(s)	161, 673
PstNI	CAGNNNCTG	1 cut(s)	380
PsuI	RGATCY	1 cut(s)	598
PsyI	GACNNNGTC	1 cut(s)	463
PvuII	CAGCTG	2 cut(s)	14, 341
RsaI	GTAC	2 cut(s)	52, 428
RsaNI	GTAC	2 cut(s)	51, 427
RseI	CAYNNNNRTG	1 cut(s)	129
SapI	GCTCTTC	1 cut(s)	61
SaqAI	TTAA	1 cut(s)	38
SatI	GCNGC	7 cut(s)	12, 15, 97, 256, 290, 402, 558
Sau3AI	GATC	4 cut(s)	382, 598, 649, 682
Sau96I	GGNCC	2 cut(s)	161, 673
SchI	GAGTC	1 cut(s)	329
ScrFI	CCNGG	2 cut(s)	195, 569
SfaNI	GCATC	1 cut(s)	143
SinI	GGWCC	1 cut(s)	161
SmiMI	CAYNNNNRTG	1 cut(s)	129
SmlI	CTYRAG	2 cut(s)	91, 549
SmoI	CTYRAG	2 cut(s)	91, 549
SphI	GCATGC	1 cut(s)	134
Sse9I	AATT	2 cut(s)	58, 492
SsiI	CCGC	2 cut(s)	97, 558
SspMI	CTAG	3 cut(s)	84, 386, 778
StyD4I	CCNGG	2 cut(s)	193, 567
StyI	CCWWGG	1 cut(s)	676
TaiI	ACGT	2 cut(s)	114, 626
TaqI	TCGA	2 cut(s)	201, 526
TasI	AATT	2 cut(s)	58, 492
TauI	GCSGC	2 cut(s)	99, 560
TfiI	GAWTC	3 cut(s)	198, 210, 344
Tru1I	TTAA	1 cut(s)	38
Tru9I	TTAA	1 cut(s)	38
TscAI	CASTG	1 cut(s)	696
TseFI	GTSAC	1 cut(s)	691
TseI	GCWGC	5 cut(s)	11, 14, 255, 289, 401
Tsp45I	GTSAC	1 cut(s)	691
TspDTI	ATGAA	4 cut(s)	113, 246, 642, 706
TspRI	CASTG	1 cut(s)	696
Tth111I	GACNNNGTC	1 cut(s)	463
VpaK11BI	GGWCC	1 cut(s)	161
XapI	RAATTY	2 cut(s)	58, 492
XbaI	TCTAGA	1 cut(s)	385
XceI	RCATGY	1 cut(s)	134
XmnI	GAANNNNTTC	1 cut(s)	633
XspI	CTAG	3 cut(s)	84, 386, 778
Zsp2I	ATGCAT	1 cut(s)	136

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.